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Lag0012180 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012180
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr1:38330324..38331052
RNA-Seq ExpressionLag0012180
SyntenyLag0012180
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]9.9e-2037.8Show/hide
Query:  GTYTGNNARKKSEARAKSEADQRPRSHRAVQNQKARFDRYTPLTASFEQGLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIE
        G  T     +  +    S  ++R RS +  ++   +F++YTP T   EQ L  I+D  LLK PE++++   +R++ +YC+FH DHGHAT++C  L++E+E
Subjt:  GTYTGNNARKKSEARAKSEADQRPRSHRAVQNQKARFDRYTPLTASFEQGLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIE

Query:  ALIREGYPKGFVRNDRSSRPLPADQGKGDANPLFEIRTILGGPSEEGVG----AAHGEQKMSRE
         LIR GY K +V       P     G+ D +P  EIRTI+GGP E   G    A   E + SRE
Subjt:  ALIREGYPKGFVRNDRSSRPLPADQGKGDANPLFEIRTILGGPSEEGVG----AAHGEQKMSRE

XP_023876176.1 uncharacterized protein LOC111988620 [Quercus suber]1.8e-2138.82Show/hide
Query:  RKKSEARAKSEADQRP-----RSHRAVQNQKARFDRYTPLTASFEQGLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIEALI
        R++ E R + +  +RP     R+ R  +    RF  +TPLTA  +Q L  I+D   L  P KL+SDP +R+R+KYC FH DHGH T EC  L+ +IEALI
Subjt:  RKKSEARAKSEADQRP-----RSHRAVQNQKARFDRYTPLTASFEQGLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIEALI

Query:  REGYPKGFVRNDRSSRPLPADQGKGDAN----PLFEIRTILGGPSEEGVGAAHGEQKMSRECYFMALGNI
        R+G  + FVR +R  +P    Q + D      P+ +IR I+GG S        G  K +R+ Y   + N+
Subjt:  REGYPKGFVRNDRSSRPLPADQGKGDAN----PLFEIRTILGGPSEEGVGAAHGEQKMSRECYFMALGNI

XP_030950020.1 uncharacterized protein LOC115973918 [Quercus lobata]1.2e-2038.27Show/hide
Query:  KSEADQRPRSHRAVQNQKARFDRYTPLTASFEQGLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVRNDR
        K   D+R            R  +YTPL A  EQ L  I+D   LK PEKL+ DP++RNRNKYC FH DHGH T EC  L+ +IE LIR+G  +GF+  D+
Subjt:  KSEADQRPRSHRAVQNQKARFDRYTPLTASFEQGLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVRNDR

Query:  SSRPLPADQGKGDANPLFEIRTILGGPSEEGVGAAHGEQKMSRECYFMALGNIDRKAQATSA
                       PL EIR I+GG S        G    S++ Y   + N+    ++  A
Subjt:  SSRPLPADQGKGDANPLFEIRTILGGPSEEGVGAAHGEQKMSRECYFMALGNIDRKAQATSA

XP_030970463.1 uncharacterized protein LOC115990823 [Quercus lobata]3.8e-1934.85Show/hide
Query:  AEQKPNRKKARRSSPLKTASGTYTGNNARKKSEARAKSEADQRPRSHRAVQNQKARFDRYTPLTASFEQGLAAIQDTNLLKRPEKLRSDPDRRNRNKYCM
        AE     KK +RS  +      +     R K     K   D+R            R  +YTPL A  EQ L  I+D   LK PEKL+ DP++RNRNKYC 
Subjt:  AEQKPNRKKARRSSPLKTASGTYTGNNARKKSEARAKSEADQRPRSHRAVQNQKARFDRYTPLTASFEQGLAAIQDTNLLKRPEKLRSDPDRRNRNKYCM

Query:  FHGDHGHATRECIQLRDEIEALIREGYPKGFVRNDRSSRPLPADQGKGDANPLFEIRTILGGPSEEGVGAAHGEQKMSRECYFMALGNIDRKAQATSA
        FH DHGH T EC  L+ +IE LIR+G  +GF+  D+               PL EIR I+G       G+  G    S++ Y   + N+    ++  A
Subjt:  FHGDHGHATRECIQLRDEIEALIREGYPKGFVRNDRSSRPLPADQGKGDANPLFEIRTILGGPSEEGVGAAHGEQKMSRECYFMALGNIDRKAQATSA

XP_030970531.1 uncharacterized protein LOC115990904 [Quercus lobata]4.9e-1934.34Show/hide
Query:  AEQKPNRKKARRSSPLKTASGTYTGNNARKKSEARAKSEADQRPRSHRAVQNQKARFDRYTPLTASFEQGLAAIQDTNLLKRPEKLRSDPDRRNRNKYCM
        AE     KK +RS  + T    +     R K     K   ++R        +   R  +YTPL A  EQ L  I+D   LK P+K++ DP++RNRNKYC 
Subjt:  AEQKPNRKKARRSSPLKTASGTYTGNNARKKSEARAKSEADQRPRSHRAVQNQKARFDRYTPLTASFEQGLAAIQDTNLLKRPEKLRSDPDRRNRNKYCM

Query:  FHGDHGHATRECIQLRDEIEALIREGYPKGFVRNDRSSRPLPADQGKGDANPLFEIRTILGGPSEEGVGAAHGEQKMSRECYFMALGNIDRKAQATSA
        FH DHGH T EC  L+ +IE LIR+G  +GF+  D+          +    PL EIR I+GG S        G+   S++ Y   + +I    ++  A
Subjt:  FHGDHGHATRECIQLRDEIEALIREGYPKGFVRNDRSSRPLPADQGKGDANPLFEIRTILGGPSEEGVGAAHGEQKMSRECYFMALGNIDRKAQATSA

TrEMBL top hitse value%identityAlignment
A0A2N9F6A1 Ribonuclease H6.3e-2036.47Show/hide
Query:  RKKSEARAKSEADQRPRSHRAVQNQK------ARFDRYTPLTASFEQGLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIEAL
        RK++E R    A Q+         +K       +F  +TPL    ++ L  IQ+   L+ P K+RSDP+ R +N YC FH DHGH T +C+ L++++E L
Subjt:  RKKSEARAKSEADQRPRSHRAVQNQK------ARFDRYTPLTASFEQGLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIEAL

Query:  IREGYPKGFVRNDRSSRPLPADQGKGDAN---PLFEIRTILGGPSEEGVGAAHGEQKMSRECYFMALGNI
        IR+G  + +V+  R ++P PA +G+ + N   P+ EIRTI+GGP      A+ G  + SR+ Y   + NI
Subjt:  IREGYPKGFVRNDRSSRPLPADQGKGDAN---PLFEIRTILGGPSEEGVGAAHGEQKMSRECYFMALGNI

A0A2N9FPE3 Ribonuclease H2.4e-1937.21Show/hide
Query:  RKKSEARAKSEADQR-PRSHRAVQNQK-----ARFDRYTPLTASFEQGLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIEAL
        RK++E R    A Q+ P+     + ++      +F+ +TPL    ++ L  IQD   L+ P K+RSDP+ R +N YC FH DHGH T EC+ L++++E L
Subjt:  RKKSEARAKSEADQR-PRSHRAVQNQK-----ARFDRYTPLTASFEQGLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIEAL

Query:  IREGYPKGFVRNDRSSRPL--PADQGKGDAN---PLFEIRTILGGPSEEGVGAAHGEQKMSRECYFMALGNI
        IR+G  K +V    ++RP   PA + + + N   P+ EIRTI+GGP      A+ G  + SR+ Y   + NI
Subjt:  IREGYPKGFVRNDRSSRPL--PADQGKGDAN---PLFEIRTILGGPSEEGVGAAHGEQKMSRECYFMALGNI

A0A2N9G0G8 Retrotrans_gag domain-containing protein3.1e-1937.21Show/hide
Query:  RKKSEARAKSEADQRPRSHRAVQNQK------ARFDRYTPLTASFEQGLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIEAL
        RK++E R    A Q+         +K       +F  +TPL    ++ L  IQD   L+ P K+RSDP+ R +N YC FH DHGH T EC+ L+++IE L
Subjt:  RKKSEARAKSEADQRPRSHRAVQNQK------ARFDRYTPLTASFEQGLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIEAL

Query:  IREGYPKGFVRNDRSSRPL--PADQGKGDAN---PLFEIRTILGGPSEEGVGAAHGEQKMSRECYFMALGNI
        IR+G  + +V    ++RP   PA + + + N   P+ EIRTI+GGP      A+ G  + SR+ Y   + NI
Subjt:  IREGYPKGFVRNDRSSRPL--PADQGKGDAN---PLFEIRTILGGPSEEGVGAAHGEQKMSRECYFMALGNI

A0A2N9HH57 Ribonuclease H3.7e-2038.82Show/hide
Query:  RPRSHRAVQNQKARFDRYTPLTASFEQGLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVRNDRSSRPL-
        +PR+ +       +F  +TPL    ++ L  IQD   L+ P K+RSDP+ R +N YC FH DHGH T EC+ L+++IE LIR+G  + +V    ++RP  
Subjt:  RPRSHRAVQNQKARFDRYTPLTASFEQGLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVRNDRSSRPL-

Query:  -PADQGKGDAN---PLFEIRTILGGPSEEGVGAAHGEQKMSRECYFMALGNI
         PA + + + N   P+ EIRTI+GGP      A+ G  + SR+ Y   + NI
Subjt:  -PADQGKGDAN---PLFEIRTILGGPSEEGVGAAHGEQKMSRECYFMALGNI

A0A6J1DWY0 uncharacterized protein LOC1110252934.8e-2037.8Show/hide
Query:  GTYTGNNARKKSEARAKSEADQRPRSHRAVQNQKARFDRYTPLTASFEQGLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIE
        G  T     +  +    S  ++R RS +  ++   +F++YTP T   EQ L  I+D  LLK PE++++   +R++ +YC+FH DHGHAT++C  L++E+E
Subjt:  GTYTGNNARKKSEARAKSEADQRPRSHRAVQNQKARFDRYTPLTASFEQGLAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHGDHGHATRECIQLRDEIE

Query:  ALIREGYPKGFVRNDRSSRPLPADQGKGDANPLFEIRTILGGPSEEGVG----AAHGEQKMSRE
         LIR GY K +V       P     G+ D +P  EIRTI+GGP E   G    A   E + SRE
Subjt:  ALIREGYPKGFVRNDRSSRPLPADQGKGDANPLFEIRTILGGPSEEGVG----AAHGEQKMSRE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGCTCCTCGGCCAATGGCCGAGGCCGAGCAGAAGCCCAATCGCAAAAAGGCCCGCAGAAGTTCGCCGCTAAAGACAGCGTCGGGTACGTACACAGGGAAT
AATGCCAGGAAAAAGTCGGAGGCTCGGGCAAAGTCCGAGGCCGACCAGAGGCCAAGGAGCCACAGGGCTGTGCAGAACCAAAAGGCCAGATTCGACAGGTATACA
CCACTAACAGCTTCTTTTGAACAGGGTTTGGCCGCAATACAGGACACAAATCTGTTGAAACGCCCAGAAAAGTTGAGATCAGACCCTGACAGGAGGAACAGAAAC
AAGTACTGCATGTTCCACGGAGACCACGGTCACGCAACCCGGGAATGCATACAATTGAGGGACGAGATAGAAGCCCTAATCCGAGAAGGTTACCCCAAGGGGTTC
GTGAGGAATGACAGAAGCAGTAGGCCACTGCCGGCAGATCAAGGTAAGGGCGATGCCAACCCACTGTTCGAGATACGAACAATTTTAGGAGGACCATCCGAAGAA
GGTGTAGGAGCAGCGCATGGCGAGCAAAAAATGTCGAGGGAATGTTACTTTATGGCGCTCGGGAACATTGACAGGAAGGCTCAAGCAACGTCAGCCTCGGGAGAT
GGCCGAGGCCGAGCCTTTGAGGGGTCAAGCTATCCCTTCCAATGGAACATTGATTTCCTTTTCTTATGTCCTTTAGTTTCCAGTTTCTTGAAACCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCGCTCCTCGGCCAATGGCCGAGGCCGAGCAGAAGCCCAATCGCAAAAAGGCCCGCAGAAGTTCGCCGCTAAAGACAGCGTCGGGTACGTACACAGGGAAT
AATGCCAGGAAAAAGTCGGAGGCTCGGGCAAAGTCCGAGGCCGACCAGAGGCCAAGGAGCCACAGGGCTGTGCAGAACCAAAAGGCCAGATTCGACAGGTATACA
CCACTAACAGCTTCTTTTGAACAGGGTTTGGCCGCAATACAGGACACAAATCTGTTGAAACGCCCAGAAAAGTTGAGATCAGACCCTGACAGGAGGAACAGAAAC
AAGTACTGCATGTTCCACGGAGACCACGGTCACGCAACCCGGGAATGCATACAATTGAGGGACGAGATAGAAGCCCTAATCCGAGAAGGTTACCCCAAGGGGTTC
GTGAGGAATGACAGAAGCAGTAGGCCACTGCCGGCAGATCAAGGTAAGGGCGATGCCAACCCACTGTTCGAGATACGAACAATTTTAGGAGGACCATCCGAAGAA
GGTGTAGGAGCAGCGCATGGCGAGCAAAAAATGTCGAGGGAATGTTACTTTATGGCGCTCGGGAACATTGACAGGAAGGCTCAAGCAACGTCAGCCTCGGGAGAT
GGCCGAGGCCGAGCCTTTGAGGGGTCAAGCTATCCCTTCCAATGGAACATTGATTTCCTTTTCTTATGTCCTTTAGTTTCCAGTTTCTTGAAACCTTGA
Protein sequenceShow/hide protein sequence
MSAPRPMAEAEQKPNRKKARRSSPLKTASGTYTGNNARKKSEARAKSEADQRPRSHRAVQNQKARFDRYTPLTASFEQGLAAIQDTNLLKRPEKLRSDPDRRNRN
KYCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVRNDRSSRPLPADQGKGDANPLFEIRTILGGPSEEGVGAAHGEQKMSRECYFMALGNIDRKAQATSASGD
GRGRAFEGSSYPFQWNIDFLFLCPLVSSFLKP