; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0012209 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012209
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionB3 domain-containing protein
Genome locationchr1:38654078..38655100
RNA-Seq ExpressionLag0012209
SyntenyLag0012209
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR005508 - B3 domain-containing protein At2g31720-like
IPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AET00512.1 B3 domain plant protein [Medicago truncatula]2.1e-0733.33Show/hide
Query:  PNFPTRFTTLIEDPESIRPRILIEKRLRQANVDLTRDRLSISAKKMKETFLVPDEETML------KSGNV----MEVNVIEPEGRAVSSLTLRR-RRLWR
        P  P  F   IE  E    +++I+K L  ++VD  + RLSI   K++E FL P EE  L      K G      M V V++P       +  ++ + +  
Subjt:  PNFPTRFTTLIEDPESIRPRILIEKRLRQANVDLTRDRLSISAKKMKETFLVPDEETML------KSGNV----MEVNVIEPEGRAVSSLTLRR-RRLWR

Query:  KTYELIDGWNYVVARNINALKAGELVRVWYFRVKGELWFAL
        + Y + + WN +VA   N  KA + V++W FR +GEL+FAL
Subjt:  KTYELIDGWNYVVARNINALKAGELVRVWYFRVKGELWFAL

KAG4110545.1 hypothetical protein ERO13_D13G055275v2 [Gossypium hirsutum]2.1e-0735.07Show/hide
Query:  PPNFPTRFTTLIEDPESIRPRILIEKRLRQANVDLTRDRLSISAKKMKETFLVPDEETMLKSGNVMEVNVIEPEGRAVSSLTLRRRRLWRKTYELIDG-W
        P N P  F   I+D      +I+I+K L+  ++   ++RLSIS K++K TFL  DEE ML +   M V  +EP   +VS++ L +  +      +I+G +
Subjt:  PPNFPTRFTTLIEDPESIRPRILIEKRLRQANVDLTRDRLSISAKKMKETFLVPDEETMLKSGNVMEVNVIEPEGRAVSSLTLRRRRLWRKTYELIDG-W

Query:  NYVVARNINALKAGELVRVWYFRVKG--ELWFAL
        + V+  N ++LK   +V++W FRV+   +L FAL
Subjt:  NYVVARNINALKAGELVRVWYFRVKG--ELWFAL

MBA0631707.1 hypothetical protein [Gossypium davidsonii]1.2e-0733.33Show/hide
Query:  PPNFPTRFTTLIEDPESIRPRILIEKRLRQANVDLTRDRLSISAKKMKETFLVPDEETMLKSGNVMEVNVIEPEGRAVSSLTLRRRRLWRKTYELIDG-W
        PP+ P  F   I+D      +I+I+K L+  ++   ++RLSIS K+++ TFL  DEE +L +   M V  +EP   ++S++ L +  +      +I+G +
Subjt:  PPNFPTRFTTLIEDPESIRPRILIEKRLRQANVDLTRDRLSISAKKMKETFLVPDEETMLKSGNVMEVNVIEPEGRAVSSLTLRRRRLWRKTYELIDG-W

Query:  NYVVARNINALKAGELVRVWYFRVK--GELWFAL-EVLGEE
        + V+  N ++LK   +V++W FRV+   +L FAL +V+ EE
Subjt:  NYVVARNINALKAGELVRVWYFRVK--GELWFAL-EVLGEE

XP_022156187.1 VID27-like protein [Momordica charantia]6.6e-3839.55Show/hide
Query:  SESSFGDT--DEAGDDTNLSSHNDDSESSDVASEEVVDIVNVSDDGTTAEGGGGGSEKSVEMEEQE--------SRLTET--EIEEQKDVSMKESAKPES
        S S  G+T  DE+ DD   +    +S +  +  EE     +  DDG   E G G  +   E++E E          +T+   EIEE+KDVSM+E+ + ES
Subjt:  SESSFGDT--DEAGDDTNLSSHNDDSESSDVASEEVVDIVNVSDDGTTAEGGGGGSEKSVEMEEQE--------SRLTET--EIEEQKDVSMKESAKPES

Query:  SSAATATLENQESSESYGEEETEPRVLQNFPLKSMEIEERNLRKDVPMKESTKPESSSAAAAAEDQESSELDGDE-ETEPVVFRNLPPNFPTRFTTLIED
        S +A A                                                  S+AA AA DQ+SSE DG+E ETE  +  N PPNFP  FT  + D
Subjt:  SSAATATLENQESSESYGEEETEPRVLQNFPLKSMEIEERNLRKDVPMKESTKPESSSAAAAAEDQESSELDGDE-ETEPVVFRNLPPNFPTRFTTLIED

Query:  PESIRPRILIEKRLRQANVDLTRDRLSISAKKMKETFLVPDEETMLKSGNVMEVNVIEPEGRAVSSLTLRRRRLWRK---TYELIDGWNYVVARNINALK
        P SIRPRIL+EK+LR+++VD  R+RLSI AKK+KE FL+ DEE  + +G  MEV VIEP+   VS++TLRRRR+      +Y L   W+ VVARN +ALK
Subjt:  PESIRPRILIEKRLRQANVDLTRDRLSISAKKMKETFLVPDEETMLKSGNVMEVNVIEPEGRAVSSLTLRRRRLWRK---TYELIDGWNYVVARNINALK

Query:  AGELVRVWYFR-----VKGELWFALEVL-GEEQKDSEISKHLVDKWYGQKVFFP
         G  VRVWYF      V   L FA+EV    +  D E  K L  KW+GQ +F P
Subjt:  AGELVRVWYFR-----VKGELWFALEVL-GEEQKDSEISKHLVDKWYGQKVFFP

XP_028081945.1 B3 domain-containing protein At5g24050-like [Camellia sinensis]1.2e-0733.57Show/hide
Query:  LPPNFPTRFTTLIEDPESIRPRILIEKRLRQANVDLTRDRLSISAKKMKETFLVPDEETML--KSGN---VMEVNVIEPEGRAVSSLTLRRRRLWRK---
        +PP  P +F   IE         +IEK L + ++  T  RLS+   ++   FL  +E+ +L  ++GN    +E  +IEP G   S + L++  + +K   
Subjt:  LPPNFPTRFTTLIEDPESIRPRILIEKRLRQANVDLTRDRLSISAKKMKETFLVPDEETML--KSGN---VMEVNVIEPEGRAVSSLTLRRRRLWRK---

Query:  ---TYELIDGWNYVVARNINALKAGELVRVWYFRVKGELWFAL
           TY L   WN VV    N L+ G +V++W FRV  +LWFAL
Subjt:  ---TYELIDGWNYVVARNINALKAGELVRVWYFRVKGELWFAL

TrEMBL top hitse value%identityAlignment
A0A5B6X2U8 B3 domain-containing protein1.0e-0734.33Show/hide
Query:  PPNFPTRFTTLIEDPESIRPRILIEKRLRQANVDLTRDRLSISAKKMKETFLVPDEETMLKSGNVMEVNVIEPEGRAVSSLTLRRRRLWRKTYELIDG-W
        PP+ P  F   I+D      +++I+K L+  N+   ++RLS+S K+++ TFL  DEE ML +   M V  IEP   +VS++ L +  +      +I+G +
Subjt:  PPNFPTRFTTLIEDPESIRPRILIEKRLRQANVDLTRDRLSISAKKMKETFLVPDEETMLKSGNVMEVNVIEPEGRAVSSLTLRRRRLWRKTYELIDG-W

Query:  NYVVARNINALKAGELVRVWYFRVK--GELWFAL
        + V+  N ++LK   +V++W FRV+   +L FAL
Subjt:  NYVVARNINALKAGELVRVWYFRVK--GELWFAL

A0A5D2HTB8 Uncharacterized protein1.0e-0735.07Show/hide
Query:  PPNFPTRFTTLIEDPESIRPRILIEKRLRQANVDLTRDRLSISAKKMKETFLVPDEETMLKSGNVMEVNVIEPEGRAVSSLTLRRRRLWRKTYELIDG-W
        P N P  F   I+D      +I+I+K L+  ++   ++RLSIS K++K TFL  DEE ML +   M V  +EP   +VS++ L +  +      +I+G +
Subjt:  PPNFPTRFTTLIEDPESIRPRILIEKRLRQANVDLTRDRLSISAKKMKETFLVPDEETMLKSGNVMEVNVIEPEGRAVSSLTLRRRRLWRKTYELIDG-W

Query:  NYVVARNINALKAGELVRVWYFRVKG--ELWFAL
        + V+  N ++LK   +V++W FRV+   +L FAL
Subjt:  NYVVARNINALKAGELVRVWYFRVKG--ELWFAL

A0A5D2S2D8 Uncharacterized protein2.2e-0734.33Show/hide
Query:  PPNFPTRFTTLIEDPESIRPRILIEKRLRQANVDLTRDRLSISAKKMKETFLVPDEETMLKSGNVMEVNVIEPEGRAVSSLTLRRRRLWRKTYELIDG-W
        P N P  F   I+D      +I+I+K L+  ++   ++RLSIS K++K TFL  DEE ML +   M +  +EP   +VS++ L +  +      +I+G +
Subjt:  PPNFPTRFTTLIEDPESIRPRILIEKRLRQANVDLTRDRLSISAKKMKETFLVPDEETMLKSGNVMEVNVIEPEGRAVSSLTLRRRRLWRKTYELIDG-W

Query:  NYVVARNINALKAGELVRVWYFRVKG--ELWFAL
        + V+  N ++LK   +V++W FRV+   +L FAL
Subjt:  NYVVARNINALKAGELVRVWYFRVKG--ELWFAL

A0A6J1DRC9 VID27-like protein3.2e-3839.55Show/hide
Query:  SESSFGDT--DEAGDDTNLSSHNDDSESSDVASEEVVDIVNVSDDGTTAEGGGGGSEKSVEMEEQE--------SRLTET--EIEEQKDVSMKESAKPES
        S S  G+T  DE+ DD   +    +S +  +  EE     +  DDG   E G G  +   E++E E          +T+   EIEE+KDVSM+E+ + ES
Subjt:  SESSFGDT--DEAGDDTNLSSHNDDSESSDVASEEVVDIVNVSDDGTTAEGGGGGSEKSVEMEEQE--------SRLTET--EIEEQKDVSMKESAKPES

Query:  SSAATATLENQESSESYGEEETEPRVLQNFPLKSMEIEERNLRKDVPMKESTKPESSSAAAAAEDQESSELDGDE-ETEPVVFRNLPPNFPTRFTTLIED
        S +A A                                                  S+AA AA DQ+SSE DG+E ETE  +  N PPNFP  FT  + D
Subjt:  SSAATATLENQESSESYGEEETEPRVLQNFPLKSMEIEERNLRKDVPMKESTKPESSSAAAAAEDQESSELDGDE-ETEPVVFRNLPPNFPTRFTTLIED

Query:  PESIRPRILIEKRLRQANVDLTRDRLSISAKKMKETFLVPDEETMLKSGNVMEVNVIEPEGRAVSSLTLRRRRLWRK---TYELIDGWNYVVARNINALK
        P SIRPRIL+EK+LR+++VD  R+RLSI AKK+KE FL+ DEE  + +G  MEV VIEP+   VS++TLRRRR+      +Y L   W+ VVARN +ALK
Subjt:  PESIRPRILIEKRLRQANVDLTRDRLSISAKKMKETFLVPDEETMLKSGNVMEVNVIEPEGRAVSSLTLRRRRLWRK---TYELIDGWNYVVARNINALK

Query:  AGELVRVWYFR-----VKGELWFALEVL-GEEQKDSEISKHLVDKWYGQKVFFP
         G  VRVWYF      V   L FA+EV    +  D E  K L  KW+GQ +F P
Subjt:  AGELVRVWYFR-----VKGELWFALEVL-GEEQKDSEISKHLVDKWYGQKVFFP

A0A7J8SZZ3 Uncharacterized protein5.9e-0833.33Show/hide
Query:  PPNFPTRFTTLIEDPESIRPRILIEKRLRQANVDLTRDRLSISAKKMKETFLVPDEETMLKSGNVMEVNVIEPEGRAVSSLTLRRRRLWRKTYELIDG-W
        PP+ P  F   I+D      +I+I+K L+  ++   ++RLSIS K+++ TFL  DEE +L +   M V  +EP   ++S++ L +  +      +I+G +
Subjt:  PPNFPTRFTTLIEDPESIRPRILIEKRLRQANVDLTRDRLSISAKKMKETFLVPDEETMLKSGNVMEVNVIEPEGRAVSSLTLRRRRLWRKTYELIDG-W

Query:  NYVVARNINALKAGELVRVWYFRVK--GELWFAL-EVLGEE
        + V+  N ++LK   +V++W FRV+   +L FAL +V+ EE
Subjt:  NYVVARNINALKAGELVRVWYFRVK--GELWFAL-EVLGEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G05930.1 Domain of unknown function (DUF313)1.3e-0431.9Show/hide
Query:  ILIEKRLRQANV-DLTRDRLSISAKKM-KETFLVPDEETMLK----SGNVMEVNVIEPEGRAVSSLTLRRRRLWRKTYELIDGWNYVVARNINALKAGEL
        +++EK L   +V   T  R S+   ++    FL P+E ++L+    +   M V  I  + R+     + +R  W + Y L  GWN VV    N LKAG+ 
Subjt:  ILIEKRLRQANV-DLTRDRLSISAKKM-KETFLVPDEETMLK----SGNVMEVNVIEPEGRAVSSLTLRRRRLWRKTYELIDGWNYVVARNINALKAGEL

Query:  VRVWYFRVKGELWFAL
        + +W FR  G L FA+
Subjt:  VRVWYFRVKGELWFAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGACGATACCGATTCCGGCTCTGAATCTTCCTTCGGCGATACAGACGAAGCCGGCGACGACACCAACCTATCTTCGCACAATGATGACAGCGAAAGCTCCGATGT
TGCCAGTGAGGAGGTGGTGGACATCGTCAATGTAAGCGACGACGGAACGACGGCGGAAGGAGGAGGAGGAGGAAGCGAGAAATCGGTGGAGATGGAAGAACAAGAAAGCA
GACTTACCGAAACGGAGATCGAAGAACAAAAGGACGTTTCGATGAAAGAATCAGCAAAACCGGAATCCTCCTCGGCCGCCACCGCCACCTTAGAAAATCAAGAATCCTCC
GAATCGTATGGCGAGGAGGAAACAGAGCCTCGAGTCTTGCAAAACTTTCCGCTGAAATCGATGGAGATCGAAGAACGAAACTTACGAAAGGACGTTCCGATGAAAGAATC
GACAAAACCGGAGTCCTCCTCGGCCGCCGCCGCCGCAGAAGATCAAGAATCCTCCGAATTGGACGGCGACGAAGAAACAGAGCCTGTAGTCTTCCGAAACCTGCCGCCGA
ACTTCCCCACGCGATTCACGACACTGATCGAAGATCCGGAGTCGATTCGTCCTCGGATCTTGATCGAGAAGCGATTGCGGCAAGCGAACGTCGATTTGACTCGGGATCGA
TTGTCGATTTCGGCGAAGAAGATGAAGGAGACGTTCTTGGTGCCGGATGAAGAGACGATGTTGAAATCCGGCAACGTTATGGAGGTGAACGTGATCGAGCCGGAGGGTAG
AGCAGTGAGTTCGTTGACATTGCGACGGCGAAGGCTGTGGCGGAAGACGTACGAGCTCATCGACGGGTGGAATTATGTGGTGGCGCGTAACATTAACGCGCTGAAGGCGG
GAGAACTTGTTAGGGTTTGGTATTTTCGCGTCAAGGGCGAGCTCTGGTTTGCGCTTGAAGTTCTTGGAGAGGAGCAGAAAGATTCTGAAATTTCGAAGCATCTGGTTGAT
AAATGGTACGGACAGAAAGTATTTTTTCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACGACGATACCGATTCCGGCTCTGAATCTTCCTTCGGCGATACAGACGAAGCCGGCGACGACACCAACCTATCTTCGCACAATGATGACAGCGAAAGCTCCGATGT
TGCCAGTGAGGAGGTGGTGGACATCGTCAATGTAAGCGACGACGGAACGACGGCGGAAGGAGGAGGAGGAGGAAGCGAGAAATCGGTGGAGATGGAAGAACAAGAAAGCA
GACTTACCGAAACGGAGATCGAAGAACAAAAGGACGTTTCGATGAAAGAATCAGCAAAACCGGAATCCTCCTCGGCCGCCACCGCCACCTTAGAAAATCAAGAATCCTCC
GAATCGTATGGCGAGGAGGAAACAGAGCCTCGAGTCTTGCAAAACTTTCCGCTGAAATCGATGGAGATCGAAGAACGAAACTTACGAAAGGACGTTCCGATGAAAGAATC
GACAAAACCGGAGTCCTCCTCGGCCGCCGCCGCCGCAGAAGATCAAGAATCCTCCGAATTGGACGGCGACGAAGAAACAGAGCCTGTAGTCTTCCGAAACCTGCCGCCGA
ACTTCCCCACGCGATTCACGACACTGATCGAAGATCCGGAGTCGATTCGTCCTCGGATCTTGATCGAGAAGCGATTGCGGCAAGCGAACGTCGATTTGACTCGGGATCGA
TTGTCGATTTCGGCGAAGAAGATGAAGGAGACGTTCTTGGTGCCGGATGAAGAGACGATGTTGAAATCCGGCAACGTTATGGAGGTGAACGTGATCGAGCCGGAGGGTAG
AGCAGTGAGTTCGTTGACATTGCGACGGCGAAGGCTGTGGCGGAAGACGTACGAGCTCATCGACGGGTGGAATTATGTGGTGGCGCGTAACATTAACGCGCTGAAGGCGG
GAGAACTTGTTAGGGTTTGGTATTTTCGCGTCAAGGGCGAGCTCTGGTTTGCGCTTGAAGTTCTTGGAGAGGAGCAGAAAGATTCTGAAATTTCGAAGCATCTGGTTGAT
AAATGGTACGGACAGAAAGTATTTTTTCCTTAG
Protein sequenceShow/hide protein sequence
MDDDTDSGSESSFGDTDEAGDDTNLSSHNDDSESSDVASEEVVDIVNVSDDGTTAEGGGGGSEKSVEMEEQESRLTETEIEEQKDVSMKESAKPESSSAATATLENQESS
ESYGEEETEPRVLQNFPLKSMEIEERNLRKDVPMKESTKPESSSAAAAAEDQESSELDGDEETEPVVFRNLPPNFPTRFTTLIEDPESIRPRILIEKRLRQANVDLTRDR
LSISAKKMKETFLVPDEETMLKSGNVMEVNVIEPEGRAVSSLTLRRRRLWRKTYELIDGWNYVVARNINALKAGELVRVWYFRVKGELWFALEVLGEEQKDSEISKHLVD
KWYGQKVFFP