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Lag0012283 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012283
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr1:39459257..39462175
RNA-Seq ExpressionLag0012283
SyntenyLag0012283
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]2.8e-1428.23Show/hide
Query:  EDLAKGAIIIWGVWNFRNKTQSSIKPPGIDRLRNSIDFSI--SEWKKSYLKSEDPNPS-----------------------RSQTNATWFEDRNRGGLGW
        E+  +  II W +W  RNK+      P    ++ +ID  I  S  + + LK +  N                         +  TNA W  D N GG+GW
Subjt:  EDLAKGAIIIWGVWNFRNKTQSSIKPPGIDRLRNSIDFSI--SEWKKSYLKSEDPNPS-----------------------RSQTNATWFEDRNRGGLGW

Query:  VVRDLNGSLINLDMKQINQRWEVKVLESKAILEGMKVIFNTCRENNIPFEIETDALSVVKSLRGESEDLSEMKPIIDEISSFASQLVRVTFLHCKREANS
        ++RD  G +I    + I     +  LE  AI EG++ I    +E+  P  +E+D+L  +  L  + +D +E+  +++EI      +  V+  H  REAN 
Subjt:  VVRDLNGSLINLDMKQINQRWEVKVLESKAILEGMKVIFNTCRENNIPFEIETDALSVVKSLRGESEDLSEMKPIIDEISSFASQLVRVTFLHCKREANS

Query:  IAHSVAREA
        +AH +AR A
Subjt:  IAHSVAREA

XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]1.3e-1127.1Show/hide
Query:  MDEESWMVSNLSSEDLAKGAIIIWGVWNFRNK-TQSSIKPPGIDRLRNSIDFSISEWKKSY---LKSEDPNPSRS-------------QTNATWFEDRNR
        MD   W+  +        G +++W +W +RN+   S+I+ P   ++R   +  I E+  +    L  ED N  R+               +ATW +  + 
Subjt:  MDEESWMVSNLSSEDLAKGAIIIWGVWNFRNK-TQSSIKPPGIDRLRNSIDFSISEWKKSY---LKSEDPNPSRS-------------QTNATWFEDRNR

Query:  GGLGWVVRDLNGSLINLDMKQINQRWEVKVLESKAILEGMKVIFNTCRENNIPFEIETDALSVVKSLRGESEDLSEMKPIIDEISSFASQLVRVTFLHCK
        GGLGW+VRD  G  I  +         +K L     LE             I  E+E+D L VV  +   S  L+E+  I+++I      L    F H  
Subjt:  GGLGWVVRDLNGSLINLDMKQINQRWEVKVLESKAILEGMKVIFNTCRENNIPFEIETDALSVVKSLRGESEDLSEMKPIIDEISSFASQLVRVTFLHCK

Query:  REANSIAHSVAREA
         +AN +AH +AR A
Subjt:  REANSIAHSVAREA

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]3.5e-1230.29Show/hide
Query:  MVSNLSSEDLAKGAIIIWGVWNFRN----KTQSSIKPPGIDRLRNSIDFSI--SEWKKSYLKSE-------DPNPSRSQT---NATWFEDRNRGGLGWVV
        M+   S EDL    I  W +WN RN    + + S     I +L   +  S   SE   S L          +P P    T   +A+W +  +RGG+GW++
Subjt:  MVSNLSSEDLAKGAIIIWGVWNFRN----KTQSSIKPPGIDRLRNSIDFSI--SEWKKSYLKSE-------DPNPSRSQT---NATWFEDRNRGGLGWVV

Query:  RDLNGSLINLDMKQINQRWEVKVLESKAILEGMKVIFNTCRENNIPFEIETDALSVVKSLRGESEDLSEMKPIIDEISSFASQLVRVTFLHCKREANSIA
        R  +G ++    + +     VK+LE+ AILEG++ + N       P  IETD+  V   L  + EDL++   +++EI +       + F    RE N  A
Subjt:  RDLNGSLINLDMKQINQRWEVKVLESKAILEGMKVIFNTCRENNIPFEIETDALSVVKSLRGESEDLSEMKPIIDEISSFASQLVRVTFLHCKREANSIA

Query:  HSVAREAS
        HS+A+ AS
Subjt:  HSVAREAS

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]3.2e-1326.94Show/hide
Query:  EDLAKGAIIIWGVWNFRNKT--------------------------QSSIKPPGIDR----LRNSIDFSISEWKKSYLKSEDPNPSRSQTNATWFEDRNR
        E+  +  II W +W  RNK+                           +++K    ++    +R   D + + W     K    N  +  T+A W  D N 
Subjt:  EDLAKGAIIIWGVWNFRNKT--------------------------QSSIKPPGIDR----LRNSIDFSISEWKKSYLKSEDPNPSRSQTNATWFEDRNR

Query:  GGLGWVVRDLNGSLINLDMKQINQRWEVKVLESKAILEGMKVIFNT-CR----ENNIPFEIETDALSVVKSLRGESEDLSEMKPIIDEISSFASQLVRVT
        GG+GW++RD  G +I  D + I     +  LE  AI EG++ I    CR    E+  P  +E+D+L  +  L  + +D +E+  +++EI      +  V+
Subjt:  GGLGWVVRDLNGSLINLDMKQINQRWEVKVLESKAILEGMKVIFNT-CR----ENNIPFEIETDALSVVKSLRGESEDLSEMKPIIDEISSFASQLVRVT

Query:  FLHCKREANSIAHSVAREA
          H  REAN +AH +AR A
Subjt:  FLHCKREANSIAHSVAREA

XP_030970599.1 uncharacterized protein LOC115990979 [Quercus lobata]2.9e-1122.45Show/hide
Query:  AIIIWGVWNFRNKTQSSIKPPGIDRLRNSIDFSISEWKKSYLKSEDPNPSRSQTNATW----------------FEDRNRGGLGWVVRDLNGSLINLDMK
        A + W +WN RNK   +++   + ++       +++++ +   +E    S       W                F + N  G+G V+R+ +G+++    +
Subjt:  AIIIWGVWNFRNKTQSSIKPPGIDRLRNSIDFSISEWKKSYLKSEDPNPSRSQTNATW----------------FEDRNRGGLGWVVRDLNGSLINLDMK

Query:  QINQRWEVKVLESKAILEGMKVIFNTCRENNIPFEIETDALSVVKSLRGESEDLSEMKPIIDEISSFASQLVRVTFLHCKREANSIAHSVAREASS
        ++N+ ++ + +E+ A L+ +++ F+   +N I   +E D+L ++K+L+ +  +LS +  +++++   AS  V +++ H KR  NS+AH++A+ A S
Subjt:  QINQRWEVKVLESKAILEGMKVIFNTCRENNIPFEIETDALSVVKSLRGESEDLSEMKPIIDEISSFASQLVRVTFLHCKREANSIAHSVAREASS

TrEMBL top hitse value%identityAlignment
A0A2N9EHR8 F-box domain-containing protein6.4e-1224.2Show/hide
Query:  LEWMDEESWMVSNLSSEDLAKGAIIIWGVWNFRNKTQSSIKPPGIDRLRNSIDFSISEWKKSYLKSEDPNPSRSQTNATW----------------FEDR
        L ++D   +M++N +S +    A++ W +W  RNK + S      DRL       ++E+  ++     P P R      W                F + 
Subjt:  LEWMDEESWMVSNLSSEDLAKGAIIIWGVWNFRNKTQSSIKPPGIDRLRNSIDFSISEWKKSYLKSEDPNPSRSQTNATW----------------FEDR

Query:  NRGGLGWVVRDLNGSLINLDMKQINQRWEVKVLESKAILEGMKVIFNTCRENNIPFEIETDALSVVKSLRGESEDLSEMKPIIDEISSFASQLVRVTFLH
           G+G ++R+ NG  +    ++I     V  +E+ A     ++  +      +  EIE D+  +V +L   +  L+    +I++    A  L  V+F H
Subjt:  NRGGLGWVVRDLNGSLINLDMKQINQRWEVKVLESKAILEGMKVIFNTCRENNIPFEIETDALSVVKSLRGESEDLSEMKPIIDEISSFASQLVRVTFLH

Query:  CKREANSIAHSVAREASSS
         KR+ NS+AH++A++A SS
Subjt:  CKREANSIAHSVAREASSS

A0A2N9F767 Uncharacterized protein3.4e-1325.11Show/hide
Query:  LEWMDEESWMVSNLSSEDLAKGAIIIWGVWNFRNKTQSSIKPPGIDRLRNSIDFSISEWKKSYLKSEDPNPSRSQTNATW----------------FEDR
        L ++D   +M++N +S +    A++ W +W  RNK + S      DRL       ++E+  ++     P PS + + A W                F +R
Subjt:  LEWMDEESWMVSNLSSEDLAKGAIIIWGVWNFRNKTQSSIKPPGIDRLRNSIDFSISEWKKSYLKSEDPNPSRSQTNATW----------------FEDR

Query:  NRGGLGWVVRDLNGSLINLDMKQINQRWEVKVLESKAILEGMKVIFNTCRENNIPFEIETDALSVVKSLRGESEDLSEMKPIIDEISSFASQLVRVTFLH
           G+G ++R+ NG  +    ++I     V  +E+ A     ++  +      +  EIE D+  +V +L   +  L+    +I++    A  L  V+F H
Subjt:  NRGGLGWVVRDLNGSLINLDMKQINQRWEVKVLESKAILEGMKVIFNTCRENNIPFEIETDALSVVKSLRGESEDLSEMKPIIDEISSFASQLVRVTFLH

Query:  CKREANSIAHSVAREASSS
         KR+ NS+AH++A++A SS
Subjt:  CKREANSIAHSVAREASSS

A0A6J1CP26 uncharacterized protein LOC1110134121.4e-1428.23Show/hide
Query:  EDLAKGAIIIWGVWNFRNKTQSSIKPPGIDRLRNSIDFSI--SEWKKSYLKSEDPNPS-----------------------RSQTNATWFEDRNRGGLGW
        E+  +  II W +W  RNK+      P    ++ +ID  I  S  + + LK +  N                         +  TNA W  D N GG+GW
Subjt:  EDLAKGAIIIWGVWNFRNKTQSSIKPPGIDRLRNSIDFSI--SEWKKSYLKSEDPNPS-----------------------RSQTNATWFEDRNRGGLGW

Query:  VVRDLNGSLINLDMKQINQRWEVKVLESKAILEGMKVIFNTCRENNIPFEIETDALSVVKSLRGESEDLSEMKPIIDEISSFASQLVRVTFLHCKREANS
        ++RD  G +I    + I     +  LE  AI EG++ I    +E+  P  +E+D+L  +  L  + +D +E+  +++EI      +  V+  H  REAN 
Subjt:  VVRDLNGSLINLDMKQINQRWEVKVLESKAILEGMKVIFNTCRENNIPFEIETDALSVVKSLRGESEDLSEMKPIIDEISSFASQLVRVTFLHCKREANS

Query:  IAHSVAREA
        +AH +AR A
Subjt:  IAHSVAREA

A0A6J1DNV9 uncharacterized protein LOC1110224031.7e-1230.29Show/hide
Query:  MVSNLSSEDLAKGAIIIWGVWNFRN----KTQSSIKPPGIDRLRNSIDFSI--SEWKKSYLKSE-------DPNPSRSQT---NATWFEDRNRGGLGWVV
        M+   S EDL    I  W +WN RN    + + S     I +L   +  S   SE   S L          +P P    T   +A+W +  +RGG+GW++
Subjt:  MVSNLSSEDLAKGAIIIWGVWNFRN----KTQSSIKPPGIDRLRNSIDFSI--SEWKKSYLKSE-------DPNPSRSQT---NATWFEDRNRGGLGWVV

Query:  RDLNGSLINLDMKQINQRWEVKVLESKAILEGMKVIFNTCRENNIPFEIETDALSVVKSLRGESEDLSEMKPIIDEISSFASQLVRVTFLHCKREANSIA
        R  +G ++    + +     VK+LE+ AILEG++ + N       P  IETD+  V   L  + EDL++   +++EI +       + F    RE N  A
Subjt:  RDLNGSLINLDMKQINQRWEVKVLESKAILEGMKVIFNTCRENNIPFEIETDALSVVKSLRGESEDLSEMKPIIDEISSFASQLVRVTFLHCKREANSIA

Query:  HSVAREAS
        HS+A+ AS
Subjt:  HSVAREAS

A0A6J1DSV1 uncharacterized protein LOC1110236081.5e-1326.94Show/hide
Query:  EDLAKGAIIIWGVWNFRNKT--------------------------QSSIKPPGIDR----LRNSIDFSISEWKKSYLKSEDPNPSRSQTNATWFEDRNR
        E+  +  II W +W  RNK+                           +++K    ++    +R   D + + W     K    N  +  T+A W  D N 
Subjt:  EDLAKGAIIIWGVWNFRNKT--------------------------QSSIKPPGIDR----LRNSIDFSISEWKKSYLKSEDPNPSRSQTNATWFEDRNR

Query:  GGLGWVVRDLNGSLINLDMKQINQRWEVKVLESKAILEGMKVIFNT-CR----ENNIPFEIETDALSVVKSLRGESEDLSEMKPIIDEISSFASQLVRVT
        GG+GW++RD  G +I  D + I     +  LE  AI EG++ I    CR    E+  P  +E+D+L  +  L  + +D +E+  +++EI      +  V+
Subjt:  GGLGWVVRDLNGSLINLDMKQINQRWEVKVLESKAILEGMKVIFNT-CR----ENNIPFEIETDALSVVKSLRGESEDLSEMKPIIDEISSFASQLVRVT

Query:  FLHCKREANSIAHSVAREA
          H  REAN +AH +AR A
Subjt:  FLHCKREANSIAHSVAREA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.0e-0622.17Show/hide
Query:  EWMDE---ESWMVSNLSSEDLAKGAI------IIWGVWNFRNKTQSSIKPPGIDRLRNSIDFSISEW---KKSYLKSEDPNPSRS---------------
        EW D      + V NL  E    G I      ++W +W  RN+     K      +         EW   ++   K+  P   R+               
Subjt:  EWMDE---ESWMVSNLSSEDLAKGAI------IIWGVWNFRNKTQSSIKPPGIDRLRNSIDFSISEW---KKSYLKSEDPNPSRS---------------

Query:  QTNATWFEDRNRGGLGWVVRDLNGSLINLDMKQINQRWEVKVLESKAILEGMKVIFNTCRENNIPFEIETDALSVVKSLRGESEDLSEMKPIIDEISSFA
         T+ATW  +  R G+GW++R+ +G ++ +  + + +   V   E +A+      +    R N      E+DA ++V  L  + +    ++P +++I    
Subjt:  QTNATWFEDRNRGGLGWVVRDLNGSLINLDMKQINQRWEVKVLESKAILEGMKVIFNTCRENNIPFEIETDALSVVKSLRGESEDLSEMKPIIDEISSFA

Query:  SQLVRVTFLHCKREANSIAHSVAREASSSS
             V F    R  N +A  +ARE+ S S
Subjt:  SQLVRVTFLHCKREANSIAHSVAREASSSS

AT4G29090.1 Ribonuclease H-like superfamily protein6.6e-0922.76Show/hide
Query:  PTGGQWR----------FRRGGGD-----SGKVLEWMDEESWMVSN--------LSSEDLAKGAIIIWGVWNFRNKTQSSIKPPGIDRLRNSIDFSISEW
        P GG+W           F  G G+     + +++ W+    W   N         +++++ + A      W  R + +S    P ++R       S   W
Subjt:  PTGGQWR----------FRRGGGD-----SGKVLEWMDEESWMVSN--------LSSEDLAKGAIIIWGVWNFRNKTQSSIKPPGIDRLRNSIDFSISEW

Query:  KKSYLKSEDPNPS---RSQTNATWFEDRNRGGLGWVVRDLNGSLINLDMKQINQRWEVKVLESKAILEGMKVIFNTCRENNIPFEIETDALSVVKSLRGE
        +        P P    +  T+ATW  D  R G+GWV+R+  G +  +  + + +   V   E +A +    +  +  + N + FE ++    V+  +   
Subjt:  KKSYLKSEDPNPS---RSQTNATWFEDRNRGGLGWVVRDLNGSLINLDMKQINQRWEVKVLESKAILEGMKVIFNTCRENNIPFEIETDALSVVKSLRGE

Query:  SEDLSEMKPIIDEISSFASQLVRVTFLHCKREANSIAHSVAREASS
         E    +KP I ++    SQ   V F+   RE N++A  VARE+ S
Subjt:  SEDLSEMKPIIDEISSFASQLVRVTFLHCKREANSIAHSVAREASS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGAACGGAGACGGAGAGATCTGCGATTGGACGTTGAACGAAGGAGGAAGAAGAATGAACCCCACTGGAGGGCAGTGGCGTTTCCGGCGAGGCGGGGGCGAC
TCCGGCAAAGTCTTGGAATGGATGGACGAAGAAAGCTGGATGGTCTCAAACCTATCATCGGAAGACCTAGCAAAAGGGGCAATAATCATATGGGGTGTGTGGAAT
TTCAGAAACAAAACTCAGTCGTCAATCAAGCCCCCAGGAATTGATCGTCTCAGGAACTCAATCGACTTCAGCATCTCAGAATGGAAGAAATCTTACCTTAAGAGT
GAAGACCCGAATCCCTCGAGGAGTCAAACGAACGCAACCTGGTTTGAAGATCGAAACAGAGGAGGCTTAGGTTGGGTGGTGCGTGACTTGAATGGGTCATTGATC
AACCTCGACATGAAACAAATCAATCAAAGATGGGAAGTCAAAGTCTTGGAATCGAAAGCAATTTTAGAAGGGATGAAAGTCATTTTCAATACCTGTCGTGAGAAC
AACATTCCCTTCGAAATCGAAACTGATGCCTTATCAGTTGTGAAATCTCTAAGAGGAGAATCGGAGGACTTATCGGAGATGAAACCGATCATTGACGAAATTTCC
TCCTTTGCCTCGCAGTTGGTCAGAGTGACGTTCCTTCATTGCAAGCGGGAAGCAAACTCCATTGCTCACAGTGTTGCAAGAGAGGCATCCTCTTCTTCCTTTTGT
TGCAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTGAACGGAGACGGAGAGATCTGCGATTGGACGTTGAACGAAGGAGGAAGAAGAATGAACCCCACTGGAGGGCAGTGGCGTTTCCGGCGAGGCGGGGGCGAC
TCCGGCAAAGTCTTGGAATGGATGGACGAAGAAAGCTGGATGGTCTCAAACCTATCATCGGAAGACCTAGCAAAAGGGGCAATAATCATATGGGGTGTGTGGAAT
TTCAGAAACAAAACTCAGTCGTCAATCAAGCCCCCAGGAATTGATCGTCTCAGGAACTCAATCGACTTCAGCATCTCAGAATGGAAGAAATCTTACCTTAAGAGT
GAAGACCCGAATCCCTCGAGGAGTCAAACGAACGCAACCTGGTTTGAAGATCGAAACAGAGGAGGCTTAGGTTGGGTGGTGCGTGACTTGAATGGGTCATTGATC
AACCTCGACATGAAACAAATCAATCAAAGATGGGAAGTCAAAGTCTTGGAATCGAAAGCAATTTTAGAAGGGATGAAAGTCATTTTCAATACCTGTCGTGAGAAC
AACATTCCCTTCGAAATCGAAACTGATGCCTTATCAGTTGTGAAATCTCTAAGAGGAGAATCGGAGGACTTATCGGAGATGAAACCGATCATTGACGAAATTTCC
TCCTTTGCCTCGCAGTTGGTCAGAGTGACGTTCCTTCATTGCAAGCGGGAAGCAAACTCCATTGCTCACAGTGTTGCAAGAGAGGCATCCTCTTCTTCCTTTTGT
TGCAATTAG
Protein sequenceShow/hide protein sequence
MLNGDGEICDWTLNEGGRRMNPTGGQWRFRRGGGDSGKVLEWMDEESWMVSNLSSEDLAKGAIIIWGVWNFRNKTQSSIKPPGIDRLRNSIDFSISEWKKSYLKS
EDPNPSRSQTNATWFEDRNRGGLGWVVRDLNGSLINLDMKQINQRWEVKVLESKAILEGMKVIFNTCRENNIPFEIETDALSVVKSLRGESEDLSEMKPIIDEIS
SFASQLVRVTFLHCKREANSIAHSVAREASSSSFCCN