; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0012302 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012302
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr1:39765110..39766728
RNA-Seq ExpressionLag0012302
SyntenyLag0012302
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034095.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.6e-3857.79Show/hide
Query:  KYNPLFE------PDSDVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNHNKGKSIVQDDHPQCSASVASLS
        +YN L E      P  ++++VM+T+  T E+RMAE+++ +N LMKA+EE+D +I  LK+ IE++  AESS T  +KN NKGK+I+Q+  PQ S S+ASLS
Subjt:  KYNPLFE------PDSDVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNHNKGKSIVQDDHPQCSASVASLS

Query:  IQQLQDMITNCIRAQYGGPTQDSLLYSKPYTKRIDNLRTPVGYQPSKFQQFDGK
        +QQLQ+MI N I+ QYGGP Q   LYSKPYTKRIDNLR P GYQP KFQQFDGK
Subjt:  IQQLQDMITNCIRAQYGGPTQDSLLYSKPYTKRIDNLRTPVGYQPSKFQQFDGK

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]3.5e-3859.57Show/hide
Query:  PDSDVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNHNKGKSIVQDDHPQCSASVASLSIQQLQDMITNCIR
        P  ++++VM+T+  T E+RMAE+++ +N LMKA+EE+D +I  LK+ IE++  AESS T  +KN NKGK+I+Q+  PQ S S+ASLS+QQLQ+MI N I+
Subjt:  PDSDVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNHNKGKSIVQDDHPQCSASVASLSIQQLQDMITNCIR

Query:  AQYGGPTQDSLLYSKPYTKRIDNLRTPVGYQPSKFQQFDGK
         QYGGP Q   LYSKPYTKRIDN+R P GYQP KFQQFDGK
Subjt:  AQYGGPTQDSLLYSKPYTKRIDNLRTPVGYQPSKFQQFDGK

KAA0050518.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.6e-3860.28Show/hide
Query:  PDSDVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNHNKGKSIVQDDHPQCSASVASLSIQQLQDMITNCIR
        P  ++++VM+T+  T E+RMAE+++ +N LMKA+EEKD +I  LK+ IE++  AESS T  +KN NKGK+I+Q+  PQ S S+ASLS+QQLQ+MI N I+
Subjt:  PDSDVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNHNKGKSIVQDDHPQCSASVASLSIQQLQDMITNCIR

Query:  AQYGGPTQDSLLYSKPYTKRIDNLRTPVGYQPSKFQQFDGK
         QYGGP Q   LYSKPYTKRIDN+R P GYQP KFQQFDGK
Subjt:  AQYGGPTQDSLLYSKPYTKRIDNLRTPVGYQPSKFQQFDGK

KAA0051994.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.0e-3758.87Show/hide
Query:  PDSDVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNHNKGKSIVQDDHPQCSASVASLSIQQLQDMITNCIR
        P  ++++VM+T+  T E+RMAE+++ +N LMKA+EE+D +I  LK+ IE++   ESS T ++KN NKGK+I+Q+  PQ S S+ASLS+QQL +MI N I+
Subjt:  PDSDVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNHNKGKSIVQDDHPQCSASVASLSIQQLQDMITNCIR

Query:  AQYGGPTQDSLLYSKPYTKRIDNLRTPVGYQPSKFQQFDGK
         QYGGP Q   LYSKPYTKRIDNLR P GYQP KFQQFDGK
Subjt:  AQYGGPTQDSLLYSKPYTKRIDNLRTPVGYQPSKFQQFDGK

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]1.8e-3760Show/hide
Query:  NDKFFVKYNPLFEPDSDVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNHNKGKSIVQDDHP-QCSASVASL
        ND        L E   DV++VMM +   +E  MAEM+  IN LMK ++E+D +I  LK Q++ +  AESSQT VVK  +KGK++VQ++ P Q S SVASL
Subjt:  NDKFFVKYNPLFEPDSDVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNHNKGKSIVQDDHP-QCSASVASL

Query:  SIQQLQDMITNCIRAQYGGPTQDSLLYSKPYTKRIDNLRTPVGYQPSKFQQFDGK
        S+QQLQDMITN IRAQYGGP+Q S +YSKPYTKRIDNLR P+GYQP KFQQFDGK
Subjt:  SIQQLQDMITNCIRAQYGGPTQDSLLYSKPYTKRIDNLRTPVGYQPSKFQQFDGK

TrEMBL top hitse value%identityAlignment
A0A5A7SY17 Ty3-gypsy retrotransposon protein7.7e-3957.79Show/hide
Query:  KYNPLFE------PDSDVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNHNKGKSIVQDDHPQCSASVASLS
        +YN L E      P  ++++VM+T+  T E+RMAE+++ +N LMKA+EE+D +I  LK+ IE++  AESS T  +KN NKGK+I+Q+  PQ S S+ASLS
Subjt:  KYNPLFE------PDSDVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNHNKGKSIVQDDHPQCSASVASLS

Query:  IQQLQDMITNCIRAQYGGPTQDSLLYSKPYTKRIDNLRTPVGYQPSKFQQFDGK
        +QQLQ+MI N I+ QYGGP Q   LYSKPYTKRIDNLR P GYQP KFQQFDGK
Subjt:  IQQLQDMITNCIRAQYGGPTQDSLLYSKPYTKRIDNLRTPVGYQPSKFQQFDGK

A0A5A7TZU9 Ribonuclease H1.7e-3859.57Show/hide
Query:  PDSDVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNHNKGKSIVQDDHPQCSASVASLSIQQLQDMITNCIR
        P  ++++VM+T+  T E+RMAE+++ +N LMKA+EE+D +I  LK+ IE++  AESS T  +KN NKGK+I+Q+  PQ S S+ASLS+QQLQ+MI N I+
Subjt:  PDSDVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNHNKGKSIVQDDHPQCSASVASLSIQQLQDMITNCIR

Query:  AQYGGPTQDSLLYSKPYTKRIDNLRTPVGYQPSKFQQFDGK
         QYGGP Q   LYSKPYTKRIDN+R P GYQP KFQQFDGK
Subjt:  AQYGGPTQDSLLYSKPYTKRIDNLRTPVGYQPSKFQQFDGK

A0A5A7U5H1 Ty3-gypsy retrotransposon protein7.7e-3960.28Show/hide
Query:  PDSDVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNHNKGKSIVQDDHPQCSASVASLSIQQLQDMITNCIR
        P  ++++VM+T+  T E+RMAE+++ +N LMKA+EEKD +I  LK+ IE++  AESS T  +KN NKGK+I+Q+  PQ S S+ASLS+QQLQ+MI N I+
Subjt:  PDSDVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNHNKGKSIVQDDHPQCSASVASLSIQQLQDMITNCIR

Query:  AQYGGPTQDSLLYSKPYTKRIDNLRTPVGYQPSKFQQFDGK
         QYGGP Q   LYSKPYTKRIDN+R P GYQP KFQQFDGK
Subjt:  AQYGGPTQDSLLYSKPYTKRIDNLRTPVGYQPSKFQQFDGK

A0A5A7U7I7 Ty3-gypsy retrotransposon protein3.2e-3755.19Show/hide
Query:  KYNPLFE------PDSDVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNHNKGKSIVQDDHPQCSASVASLS
        +YN L E      P  ++++VM+T+  T E+RMAE+++++N LMKA++E+D +I  LK+ IE++  AESS    +KN NKGK+I+Q+  PQ S S+ASLS
Subjt:  KYNPLFE------PDSDVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNHNKGKSIVQDDHPQCSASVASLS

Query:  IQQLQDMITNCIRAQYGGPTQDSLLYSKPYTKRIDNLRTPVGYQPSKFQQFDGK
        +QQLQ++I N I+ QYGGP Q   LYSKPYTKRIDN+R P GYQP KFQQFDGK
Subjt:  IQQLQDMITNCIRAQYGGPTQDSLLYSKPYTKRIDNLRTPVGYQPSKFQQFDGK

A0A5A7U9H0 Ty3-gypsy retrotransposon protein5.0e-3858.87Show/hide
Query:  PDSDVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNHNKGKSIVQDDHPQCSASVASLSIQQLQDMITNCIR
        P  ++++VM+T+  T E+RMAE+++ +N LMKA+EE+D +I  LK+ IE++   ESS T ++KN NKGK+I+Q+  PQ S S+ASLS+QQL +MI N I+
Subjt:  PDSDVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNHNKGKSIVQDDHPQCSASVASLSIQQLQDMITNCIR

Query:  AQYGGPTQDSLLYSKPYTKRIDNLRTPVGYQPSKFQQFDGK
         QYGGP Q   LYSKPYTKRIDNLR P GYQP KFQQFDGK
Subjt:  AQYGGPTQDSLLYSKPYTKRIDNLRTPVGYQPSKFQQFDGK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCACGTGGCAATTGGACCCAAGCCCAAGCCCATATGAGATTGAAGACTCAAGCTCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGG
CCGATCATCCAAGAGATCAACAAGCCAACCGATCACAGATCACAAGCTAACGACCGATCAAGAAGATCAACAAGTCAGCAGGCTGATCATCCAAGAGGATCAACAAGCTA
ACAAGCCGATCCAACAATCATCAAGCCGACAGGCGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAA
CAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGACCGAT
CAAGAAGATCAACAAGTCAACAGGCCGATCATCCAAGAGATCAACAAGCCAACAGGCCGATCCAAGAGATCATCAACCTAGCAATAAATATGTCATTCAAGACTTCTTCA
ATGGTCGCTGTCATGAACAAGTCTTACATGGGTTCTACTGCCCATCGTTGCTTCAACGGACTGACGTTGCAAAAGATAAAGCTTCTGTCGTTGCAGGCCAAGAAACAACC
TTGCAGGGGGCATATACTAATGACAAGTTTTTTGTCAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTTATGATGACTGAGACAAGAACTATGGAAGA
AAGAATGGCTGAGATGCAAGAACACATCAACAACTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCG
AATCAAGTCAAACCCAAGTCGTAAAAAATCACAACAAAGGAAAGTCTATAGTGCAAGATGATCATCCACAATGTTCTGCTTCGGTCGCTTCACTATCCATCCAACAGCTC
CAAGATATGATCACAAACTGTATCAGAGCTCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTACTCCAAACCTTATACTAAGAGGATTGATAATTTGAGAACGCCAGT
CGGGTATCAGCCATCGAAATTTCAACAATTTGATGGAAAGGCAATCCTAAACAACATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGGTACTCGAGGGGACCTGCT
AG
mRNA sequenceShow/hide mRNA sequence
ATGCCACGTGGCAATTGGACCCAAGCCCAAGCCCATATGAGATTGAAGACTCAAGCTCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGG
CCGATCATCCAAGAGATCAACAAGCCAACCGATCACAGATCACAAGCTAACGACCGATCAAGAAGATCAACAAGTCAGCAGGCTGATCATCCAAGAGGATCAACAAGCTA
ACAAGCCGATCCAACAATCATCAAGCCGACAGGCGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAA
CAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGACCGAT
CAAGAAGATCAACAAGTCAACAGGCCGATCATCCAAGAGATCAACAAGCCAACAGGCCGATCCAAGAGATCATCAACCTAGCAATAAATATGTCATTCAAGACTTCTTCA
ATGGTCGCTGTCATGAACAAGTCTTACATGGGTTCTACTGCCCATCGTTGCTTCAACGGACTGACGTTGCAAAAGATAAAGCTTCTGTCGTTGCAGGCCAAGAAACAACC
TTGCAGGGGGCATATACTAATGACAAGTTTTTTGTCAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTTATGATGACTGAGACAAGAACTATGGAAGA
AAGAATGGCTGAGATGCAAGAACACATCAACAACTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCG
AATCAAGTCAAACCCAAGTCGTAAAAAATCACAACAAAGGAAAGTCTATAGTGCAAGATGATCATCCACAATGTTCTGCTTCGGTCGCTTCACTATCCATCCAACAGCTC
CAAGATATGATCACAAACTGTATCAGAGCTCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTACTCCAAACCTTATACTAAGAGGATTGATAATTTGAGAACGCCAGT
CGGGTATCAGCCATCGAAATTTCAACAATTTGATGGAAAGGCAATCCTAAACAACATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGGTACTCGAGGGGACCTGCT
AG
Protein sequenceShow/hide protein sequence
MPRGNWTQAQAHMRLKTQAPRDQQANRPIKKINKSAGRSSKRSTSQPITDHKLTTDQEDQQVSRLIIQEDQQANKPIQQSSSRQAIQEINKPTDRSRRSTSQQADHPRDQ
QANRPIKKINKSAGRSSRRSTSQQADHPRDQQANRPIKKINKSTGRSSKRSTSQQADPRDHQPSNKYVIQDFFNGRCHEQVLHGFYCPSLLQRTDVAKDKASVVAGQETT
LQGAYTNDKFFVKYNPLFEPDSDVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNHNKGKSIVQDDHPQCSASVASLSIQQL
QDMITNCIRAQYGGPTQDSLLYSKPYTKRIDNLRTPVGYQPSKFQQFDGKAILNNILPTSLRHARTLVLEGTC