; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0012332 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012332
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr1:40057962..40060032
RNA-Seq ExpressionLag0012332
SyntenyLag0012332
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065966.1 hypothetical protein E6C27_scaffold62G00430 [Cucumis melo var. makuwa]1.5e-0542.86Show/hide
Query:  MNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKDLIKTMTKIRAFKCKSSLSQEPKLHDAPSPHELKSL---KFGVSLT---LSSCIPSP
        + +L+ KLF E N D K+HS +PSRMKRK SV INTE                        +PKLH APSP ELKS     F +SL+   L SC   P
Subjt:  MNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKDLIKTMTKIRAFKCKSSLSQEPKLHDAPSPHELKSL---KFGVSLT---LSSCIPSP
TrEMBL top hitse value%identityAlignment
A0A5A7UM99 Ty3-gypsy retrotransposon protein8.6e-0444.74Show/hide
Query:  MNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKDLIKTMTKIRAFKCKSSLSQEPKLHDAPSPHELKS
        M  L+ K F E N D K+H+ +PSRMKRK SV IN E                        EPKLH APSP ELKS
Subjt:  MNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKDLIKTMTKIRAFKCKSSLSQEPKLHDAPSPHELKS
A0A5A7VHY3 Uncharacterized protein7.1e-0642.86Show/hide
Query:  MNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKDLIKTMTKIRAFKCKSSLSQEPKLHDAPSPHELKSL---KFGVSLT---LSSCIPSP
        + +L+ KLF E N D K+HS +PSRMKRK SV INTE                        +PKLH APSP ELKS     F +SL+   L SC   P
Subjt:  MNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKDLIKTMTKIRAFKCKSSLSQEPKLHDAPSPHELKSL---KFGVSLT---LSSCIPSP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTCCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACAGA
AGGTTCCTTGAAGGATCTGATCAAGACCATGACAAAGATAAGAGCTTTTAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGC
TTAAAAGCCTCAAGTTCGGTGTTTCACTCACTCTAAGTTCGTGCATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGG
TTCTCACGCGCTTCGGTGAAGTTCCTTTCTCCAAGTCTGAAGGTTCTCACGTGCTTCGGTGAAGTTCCTTCCTCCCAAGTTCGAAGGTTCTTACGCGCTTTGCTGCAGTT
CCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGGTCCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCT
CACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGGTGAAGTTCCTTCCTCCCAAGTTCAAAGGTTCTTATGCGCTTCGGTGAAGTTCCTT
CCTCCCAAGTTCGAAGGTTCTTACGCGCTTCGCTACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCAC
GCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTTGCTGCAGTTCCTTCCT
CCAAGTTTGAAGGTTCTCACATCGCTTCGCTTTGCGCTGCGCTTCATTGCAGTTCCTTCCTCCCTAAGTTCGAAGGTTCTCACTCTTTTCACTGCAGTTCCTTCCTCCAA
ATTCGGAGGTTCTCACTCGTTTCACTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGTTGTGATTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCG
CTTCGCTGCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTACCTTCCTCCAAGCTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAA
GTTCGAAGGTTCCCTCACGCGCTTCGCTTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGCTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTTCATTGCTACCTTC
CTCCAAGTTCGAAGGTTCTCTCACGCACTGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTC
CGTTGCTACTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCA
CCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGAAGGTTGACGTCCTCGTTCCACTCCAT
CTTCAAATGTTGGCAGTTGACGGCGTCCGCTTCGCTTCATCTTCAAAAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTCCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACAGA
AGGTTCCTTGAAGGATCTGATCAAGACCATGACAAAGATAAGAGCTTTTAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGC
TTAAAAGCCTCAAGTTCGGTGTTTCACTCACTCTAAGTTCGTGCATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGG
TTCTCACGCGCTTCGGTGAAGTTCCTTTCTCCAAGTCTGAAGGTTCTCACGTGCTTCGGTGAAGTTCCTTCCTCCCAAGTTCGAAGGTTCTTACGCGCTTTGCTGCAGTT
CCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGGTCCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCT
CACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGGTGAAGTTCCTTCCTCCCAAGTTCAAAGGTTCTTATGCGCTTCGGTGAAGTTCCTT
CCTCCCAAGTTCGAAGGTTCTTACGCGCTTCGCTACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCAC
GCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTTGCTGCAGTTCCTTCCT
CCAAGTTTGAAGGTTCTCACATCGCTTCGCTTTGCGCTGCGCTTCATTGCAGTTCCTTCCTCCCTAAGTTCGAAGGTTCTCACTCTTTTCACTGCAGTTCCTTCCTCCAA
ATTCGGAGGTTCTCACTCGTTTCACTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGTTGTGATTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCG
CTTCGCTGCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTACCTTCCTCCAAGCTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAA
GTTCGAAGGTTCCCTCACGCGCTTCGCTTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGCTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTTCATTGCTACCTTC
CTCCAAGTTCGAAGGTTCTCTCACGCACTGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTC
CGTTGCTACTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCA
CCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGAAGGTTGACGTCCTCGTTCCACTCCAT
CTTCAAATGTTGGCAGTTGACGGCGTCCGCTTCGCTTCATCTTCAAAAAATTGA
Protein sequenceShow/hide protein sequence
MNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKDLIKTMTKIRAFKCKSSLSQEPKLHDAPSPHELKSLKFGVSLTLSSCIPSPKFEGSHALRCSSFPQVRR
FSRASVKFLSPSLKVLTCFGEVPSSQVRRFLRALLQFLPPSSKVLTRFGEVPSSKSEGPHALRCSSFPQVRRFSRASLQFLPHSSKVLTRFGEVPSSQVQRFLCASVKFL
PPKFEGSYALRYSSFLQVRRFSRASLQFLPPSSKVLTRFAAVPSSQFEGSHALRCSSFPQVRRFSRRFAAVPSSKFEGSHIASLCAALHCSSFLPKFEGSHSFHCSSFLQ
IRRFSLVSLQFLPPNSKVLTRCDSLQFLPPSSKVLMRFAAQFLPPSSKVLMRFVATFLQARRFSHALLQLLPPSSKVPSRASLAPSPSSKALLSAAPSPSSKALLFIATF
LQVRRFSHALLQFLPPSLKVPSRASLAPSPSSKALLSVATSPSSKALLSTAPSPSSKALLSTAPSPSSKVLLSTPLFEGSPLRFSFSKFEGSPLLLFKCLAKVDVLVPLH
LQMLAVDGVRFASSSKN