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Lag0012361 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012361
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr1:40405204..40405911
RNA-Seq ExpressionLag0012361
SyntenyLag0012361
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_006471930.1 uncharacterized protein LOC102617744 [Citrus sinensis]4.8e-0834.53Show/hide
Query:  PPTNV-------STDSKIDQKRGVGWLVRDSSGSTICLGFKAIVGNWSVKMLEMRAILEGLRSLPTVRASSQKLDIPPMVVVSNATSVVNLLNKSDADLS
        PPTNV       +T+SK DQK G+G ++RDS+G  +  G K       V   E  AI  GL+      A+S       ++V ++   V  L+N +    S
Subjt:  PPTNV-------STDSKIDQKRGVGWLVRDSSGSTICLGFKAIVGNWSVKMLEMRAILEGLRSLPTVRASSQKLDIPPMVVVSNATSVVNLLNKSDADLS

Query:  EISFLVEEIERLAAEFEFISFAHIPRSQNVDAHNLARSA
        EI +++ EI+    EF+ I F  +PR  N  AH+LA+ A
Subjt:  EISFLVEEIERLAAEFEFISFAHIPRSQNVDAHNLARSA

XP_006491472.1 uncharacterized protein LOC102626455 [Citrus sinensis]5.7e-0931.65Show/hide
Query:  DQKRGVGWLVRDSSGSTICLGFKAIVGNWSVKMLEMRAILEGLRSLPTVRASSQKLDIPPMVVVSNATSVVNLLNKSDADLSEISFLVEEIERLAAEFEF
        DQK G+G +VRD+ G  + +G K       V + E  AI  GL+    + +SS       ++V S+   VV LLN +    +EI +++ ++ R + EF+ 
Subjt:  DQKRGVGWLVRDSSGSTICLGFKAIVGNWSVKMLEMRAILEGLRSLPTVRASSQKLDIPPMVVVSNATSVVNLLNKSDADLSEISFLVEEIERLAAEFEF

Query:  ISFAHIPRSQNVDAHNLARSASIGTFGCNIWVLDPSSEFFFMGQFGPNLSNLLSRVVN
        + F+ IPR+ N  AH LA+ A           L  SS   ++G F   + N+L+ VV+
Subjt:  ISFAHIPRSQNVDAHNLARSASIGTFGCNIWVLDPSSEFFFMGQFGPNLSNLLSRVVN

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.1e-0733.33Show/hide
Query:  GVGWLVRDSSGSTICLGFKAIVGNWSVKMLEMRAILEGLRSLPTVRASSQKLDIPPMVVVSNATSVVNLLNKSDADLSEISFLVEEIERLAAEFEFISFA
        G+GW++RD  G  I    + I    ++  LE+ AI EGLR++       ++    P+ + S++   ++LL++   D +EI +L+EEI ++  + E +S  
Subjt:  GVGWLVRDSSGSTICLGFKAIVGNWSVKMLEMRAILEGLRSLPTVRASSQKLDIPPMVVVSNATSVVNLLNKSDADLSEISFLVEEIERLAAEFEFISFA

Query:  HIPRSQNVDAHNLARSA
        HI R  N  AH LAR A
Subjt:  HIPRSQNVDAHNLARSA

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]5.7e-0934.45Show/hide
Query:  GVGWLVRDSSGSTICLGFKAIVGNWSVKMLEMRAILEGLRSLPTVRASSQKLDIPPMVVVSNATSVVNLLNKSDADLSEISFLVEEIERLAAEFEFISFA
        G+GW++R   G  +  G + +    +VK+LE  AILEGLR+L  +        + P+ + +++  V +LLN+   DL++  ++VEEI  L    E ++FA
Subjt:  GVGWLVRDSSGSTICLGFKAIVGNWSVKMLEMRAILEGLRSLPTVRASSQKLDIPPMVVVSNATSVVNLLNKSDADLSEISFLVEEIERLAAEFEFISFA

Query:  HIPRSQNVDAHNLARSASI
         + R  N  AH+LA+ AS+
Subjt:  HIPRSQNVDAHNLARSASI

XP_024190234.1 uncharacterized protein LOC112194221 [Rosa chinensis]1.3e-0834.81Show/hide
Query:  PPTNVSTDSKIDQKR---GVGWLVRDSSGSTICLGFKAIVGNWSVKMLEMRAILEGLRSLPTVRASSQKLDIPPMVVVSNATSVVNLLNKSDADLSEISF
        P   ++TD+ ID K+    +G +VRD  G   C G K + GN S+  +E  A+  GL  L    A  Q L     VV S++T V++ LNK++ DLS    
Subjt:  PPTNVSTDSKIDQKR---GVGWLVRDSSGSTICLGFKAIVGNWSVKMLEMRAILEGLRSLPTVRASSQKLDIPPMVVVSNATSVVNLLNKSDADLSEISF

Query:  LVEEIERLAAEFEFISFAHIPRSQNVDAHNLARSA
        ++++I+ LA+ FE + +  + R  N+ AH +A+ A
Subjt:  LVEEIERLAAEFEFISFAHIPRSQNVDAHNLARSA

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134125.2e-0833.33Show/hide
Query:  GVGWLVRDSSGSTICLGFKAIVGNWSVKMLEMRAILEGLRSLPTVRASSQKLDIPPMVVVSNATSVVNLLNKSDADLSEISFLVEEIERLAAEFEFISFA
        G+GW++RD  G  I    + I    ++  LE+ AI EGLR++       ++    P+ + S++   ++LL++   D +EI +L+EEI ++  + E +S  
Subjt:  GVGWLVRDSSGSTICLGFKAIVGNWSVKMLEMRAILEGLRSLPTVRASSQKLDIPPMVVVSNATSVVNLLNKSDADLSEISFLVEEIERLAAEFEFISFA

Query:  HIPRSQNVDAHNLARSA
        HI R  N  AH LAR A
Subjt:  HIPRSQNVDAHNLARSA

A0A6J1DNV9 uncharacterized protein LOC1110224032.8e-0934.45Show/hide
Query:  GVGWLVRDSSGSTICLGFKAIVGNWSVKMLEMRAILEGLRSLPTVRASSQKLDIPPMVVVSNATSVVNLLNKSDADLSEISFLVEEIERLAAEFEFISFA
        G+GW++R   G  +  G + +    +VK+LE  AILEGLR+L  +        + P+ + +++  V +LLN+   DL++  ++VEEI  L    E ++FA
Subjt:  GVGWLVRDSSGSTICLGFKAIVGNWSVKMLEMRAILEGLRSLPTVRASSQKLDIPPMVVVSNATSVVNLLNKSDADLSEISFLVEEIERLAAEFEFISFA

Query:  HIPRSQNVDAHNLARSASI
         + R  N  AH+LA+ AS+
Subjt:  HIPRSQNVDAHNLARSASI

A0A6J1DSV1 uncharacterized protein LOC1110236081.2e-0733.05Show/hide
Query:  GVGWLVRDSSGSTICLGFKAIVGNWSVKMLEMRAILEGLRSLPTVRASS-QKLDIPPMVVVSNATSVVNLLNKSDADLSEISFLVEEIERLAAEFEFISF
        G+GW++RD  G  I    + I    ++  LE+ AI EGLR++        Q+    P+ + S++   ++LL++   D +EI +L+EEI ++  + + +S 
Subjt:  GVGWLVRDSSGSTICLGFKAIVGNWSVKMLEMRAILEGLRSLPTVRASS-QKLDIPPMVVVSNATSVVNLLNKSDADLSEISFLVEEIERLAAEFEFISF

Query:  AHIPRSQNVDAHNLARSA
         HI R  N  AH+LAR A
Subjt:  AHIPRSQNVDAHNLARSA

A0A803PIB6 Uncharacterized protein4.4e-0728.93Show/hide
Query:  MPPT----NVSTDSKIDQKR---GVGWLVRDSSGSTICLGFKAIVGNWSVKMLEMRAILEGLRSLPTVRASSQKLDIPPMVVVSNATSVVNLLNKSDADL
        +PPT     ++ D+ +D  R   G+G ++RDS+G  I    K +VGN+  + +E +A+  GL+        +++L + P  V ++   +V+ L    + L
Subjt:  MPPT----NVSTDSKIDQKR---GVGWLVRDSSGSTICLGFKAIVGNWSVKMLEMRAILEGLRSLPTVRASSQKLDIPPMVVVSNATSVVNLLNKSDADL

Query:  SEISFLVEEIERLAAEFEFISFAHIPRSQNVDAHNLARSASIGTFGCNIWVLDPSSEFF
        S    LVE+I    + F     +H+ R  N  AH LA+ A      C IW+ +  S  F
Subjt:  SEISFLVEEIERLAAEFEFISFAHIPRSQNVDAHNLARSASIGTFGCNIWVLDPSSEFF

Q2R147 Protein kinase domain containing protein, expressed2.9e-0634.86Show/hide
Query:  KRGVGWLVRDSSGSTICLGFKAIVGNWSVKMLEMRAILEGLRSLPTVRASSQKLDIPPMVVVSNATSVVNLLNKSDADLSEISFLVEEIERLAAEFEFIS
        K G+G ++RD+SGST+    K++    +    E+RA +EGL         + +  + P+++ ++  S+VNLL + + DLSE++ LV+EI+RL +E   + 
Subjt:  KRGVGWLVRDSSGSTICLGFKAIVGNWSVKMLEMRAILEGLRSLPTVRASSQKLDIPPMVVVSNATSVVNLLNKSDADLSEISFLVEEIERLAAEFEFIS

Query:  FAHIPRSQN
           I RSQN
Subjt:  FAHIPRSQN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.7e-0627.35Show/hide
Query:  GVGWLVRDSSGSTICLGFKAIVGNWSVKMLEMRAILEGLRSLPTVRASSQKLDIPPMVVVSNATSVVNLLNKSDADLSEISFLVEEIERLAAEFEFISFA
        G+GW++R+ SG  + +G +A+    +V   E+ A+   + ++        + +   ++  S+A ++VNLLN SD     +   +E+I++L   FE + F 
Subjt:  GVGWLVRDSSGSTICLGFKAIVGNWSVKMLEMRAILEGLRSLPTVRASSQKLDIPPMVVVSNATSVVNLLNKSDADLSEISFLVEEIERLAAEFEFISFA

Query:  HIPRSQNVDAHNLARSA
          PR  N  A  +AR +
Subjt:  HIPRSQNVDAHNLARSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCCCACAAATGTTTCGACTGACTCTAAAATAGATCAAAAGAGGGGGGTCGGTTGGTTAGTGCGTGACTCCTCCGGTTCTACTATATGCTTAGGGTTCAAG
GCAATCGTAGGCAATTGGTCTGTTAAAATGTTGGAGATGAGGGCGATCCTCGAAGGTCTTAGAAGCTTACCTACTGTGAGAGCTTCGAGCCAAAAGTTGGATATT
CCGCCGATGGTTGTCGTCTCTAATGCTACCAGTGTTGTTAATCTGCTGAACAAATCTGATGCTGATTTATCGGAGATCTCGTTCTTAGTCGAGGAAATCGAACGT
CTGGCCGCTGAGTTTGAGTTCATCTCCTTTGCCCACATCCCTCGTTCTCAAAACGTCGACGCCCACAATTTGGCACGCTCTGCTTCTATCGGGACTTTTGGGTGT
AACATATGGGTTTTGGATCCTTCTTCCGAATTTTTTTTTATGGGCCAGTTTGGGCCCAATCTGTCAAACCTCCTCTCTAGGGTGGTAAATGTTCCGTTCTCTTTG
CATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTCCCACAAATGTTTCGACTGACTCTAAAATAGATCAAAAGAGGGGGGTCGGTTGGTTAGTGCGTGACTCCTCCGGTTCTACTATATGCTTAGGGTTCAAG
GCAATCGTAGGCAATTGGTCTGTTAAAATGTTGGAGATGAGGGCGATCCTCGAAGGTCTTAGAAGCTTACCTACTGTGAGAGCTTCGAGCCAAAAGTTGGATATT
CCGCCGATGGTTGTCGTCTCTAATGCTACCAGTGTTGTTAATCTGCTGAACAAATCTGATGCTGATTTATCGGAGATCTCGTTCTTAGTCGAGGAAATCGAACGT
CTGGCCGCTGAGTTTGAGTTCATCTCCTTTGCCCACATCCCTCGTTCTCAAAACGTCGACGCCCACAATTTGGCACGCTCTGCTTCTATCGGGACTTTTGGGTGT
AACATATGGGTTTTGGATCCTTCTTCCGAATTTTTTTTTATGGGCCAGTTTGGGCCCAATCTGTCAAACCTCCTCTCTAGGGTGGTAAATGTTCCGTTCTCTTTG
CATTAA
Protein sequenceShow/hide protein sequence
MPPTNVSTDSKIDQKRGVGWLVRDSSGSTICLGFKAIVGNWSVKMLEMRAILEGLRSLPTVRASSQKLDIPPMVVVSNATSVVNLLNKSDADLSEISFLVEEIER
LAAEFEFISFAHIPRSQNVDAHNLARSASIGTFGCNIWVLDPSSEFFFMGQFGPNLSNLLSRVVNVPFSLH