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Lag0012437 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012437
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr1:41052125..41054683
RNA-Seq ExpressionLag0012437
SyntenyLag0012437
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7113203.1 hypothetical protein RHSIM_RhsimUnG0150200 [Rhododendron simsii]2.2e-2352.14Show/hide
Query:  WILDSAASVHIASDRNLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECRDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGSRQCKLTFGSQVVA
        W++DS AS H+ S RN F S+T G  G VRMGN   SK   +GDV L+T    KL+L+DVR VP+I++NLIS GKL D+GY+ +FG  + KL+ GS VVA
Subjt:  WILDSAASVHIASDRNLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECRDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGSRQCKLTFGSQVVA

Query:  VGHRKSTLYRCQLDVAK
         G + STLY  Q  ++K
Subjt:  VGHRKSTLYRCQLDVAK

KAF7121453.1 hypothetical protein RHSIM_Rhsim13G0116100 [Rhododendron simsii]2.2e-2352.14Show/hide
Query:  WILDSAASVHIASDRNLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECRDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGSRQCKLTFGSQVVA
        W++DS AS H+ S R+ F S+T G  G VRMGN   SK  G+GDV L+T    KL+L+DVR VP+I++NLIS GKL D+GY+ +FG  + KL+ GS VVA
Subjt:  WILDSAASVHIASDRNLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECRDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGSRQCKLTFGSQVVA

Query:  VGHRKSTLYRCQLDVAK
         G + STLY  Q  ++K
Subjt:  VGHRKSTLYRCQLDVAK

KAF7129225.1 hypothetical protein RHSIM_Rhsim10G0050800 [Rhododendron simsii]5.7e-2452.99Show/hide
Query:  WILDSAASVHIASDRNLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECRDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGSRQCKLTFGSQVVA
        W++DS AS H+ S R+ F S+T G  G VRMGN   SK  G+GDV L+T    KL+L+DVR VPNI++NLIS GKL D+GY+ +FG  + KL+ GS VVA
Subjt:  WILDSAASVHIASDRNLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECRDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGSRQCKLTFGSQVVA

Query:  VGHRKSTLYRCQLDVAK
         G + STLY  Q  ++K
Subjt:  VGHRKSTLYRCQLDVAK

KAF7129546.1 hypothetical protein RHSIM_Rhsim10G0154200 [Rhododendron simsii]1.7e-2351.28Show/hide
Query:  WILDSAASVHIASDRNLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECRDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGSRQCKLTFGSQVVA
        W++DS AS H+ S R+ F S+T G  G VRMGN   SK  G+GDV L+T    KL+L+DVR VP+I++NLIS GKL D+GY+ +FG  + KL+ GS +VA
Subjt:  WILDSAASVHIASDRNLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECRDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGSRQCKLTFGSQVVA

Query:  VGHRKSTLYRCQLDVAK
         G + STLY  Q+ ++K
Subjt:  VGHRKSTLYRCQLDVAK

KAG8364690.1 hypothetical protein BUALT_Bualt18G0024700 [Buddleja alternifolia]3.7e-2347.11Show/hide
Query:  LTNSNHSSDWILDSAASVHIASDRNLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECRDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGSRQCK
        +++S   +DWI+DS AS HI   R++FTS+T G+ G VRM N   ++  G+G+++L+T+   +L+LRDVR +PNI++N+IS GKL DDGY   FG  + K
Subjt:  LTNSNHSSDWILDSAASVHIASDRNLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECRDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGSRQCK

Query:  LTFGSQVVAVGHRKSTLYRCQ
        LT GS + A G +K++LY  Q
Subjt:  LTFGSQVVAVGHRKSTLYRCQ

TrEMBL top hitse value%identityAlignment
A0A438BTH6 Retrovirus-related Pol polyprotein from transposon TNT 1-947.5e-2248.74Show/hide
Query:  SDWILDSAASVHIASDRNLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECRDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGSRQCKLTFGSQV
        +DW++DS AS H+ S  + FTS++ G  G VRMGN   SK  G+GD+ L+T    KL+LRDVR VP+I++NLIS GKL D+GY   F   + KL+ GS V
Subjt:  SDWILDSAASVHIASDRNLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECRDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGSRQCKLTFGSQV

Query:  VAVGHRKSTLYRCQLDVAK
        VA G +  +LY  Q  + K
Subjt:  VAVGHRKSTLYRCQLDVAK

A0A438E432 Retrovirus-related Pol polyprotein from transposon TNT 1-947.5e-2248.74Show/hide
Query:  SDWILDSAASVHIASDRNLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECRDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGSRQCKLTFGSQV
        +DW++DS AS H+ S  + FTS++ G  G VRMGN   SK  G+GD+ L+T    KL+LRDVR VP+I++NLIS GKL D+GY   F   + KL+ GS V
Subjt:  SDWILDSAASVHIASDRNLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECRDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGSRQCKLTFGSQV

Query:  VAVGHRKSTLYRCQLDVAK
        VA G +  +LY  Q  + K
Subjt:  VAVGHRKSTLYRCQLDVAK

A0A438HI91 Retrovirus-related Pol polyprotein from transposon TNT 1-947.5e-2248.74Show/hide
Query:  SDWILDSAASVHIASDRNLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECRDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGSRQCKLTFGSQV
        +DW++DS AS H+ S  + FTS++ G  G VRMGN   SK  G+GD+ L+T    KL+LRDVR VP+I++NLIS GKL D+GY   F   + KL+ GS V
Subjt:  SDWILDSAASVHIASDRNLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECRDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGSRQCKLTFGSQV

Query:  VAVGHRKSTLYRCQLDVAK
        VA G +  +LY  Q  + K
Subjt:  VAVGHRKSTLYRCQLDVAK

A0A438IBT7 Retrovirus-related Pol polyprotein from transposon TNT 1-947.5e-2248.74Show/hide
Query:  SDWILDSAASVHIASDRNLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECRDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGSRQCKLTFGSQV
        +DW++DS AS H+ S  + FTS++ G  G VRMGN   SK  G+GD+ L+T    KL+LRDVR VP+I++NLIS GKL D+GY   F   + KL+ GS V
Subjt:  SDWILDSAASVHIASDRNLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECRDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGSRQCKLTFGSQV

Query:  VAVGHRKSTLYRCQLDVAK
        VA G +  +LY  Q  + K
Subjt:  VAVGHRKSTLYRCQLDVAK

A0A4D8YHC2 CCHC-type domain-containing protein3.4e-2249.15Show/hide
Query:  LTNSNHSSDWILDSAASVHIASDRNLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECRDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGSRQCK
        +++S   +DWI+DS AS HI   R++F S+TGG  G VRM N   ++ +GIGD+ L T+   KLVLRDVR VP+I++N+IS GKL DDGY   FG  + K
Subjt:  LTNSNHSSDWILDSAASVHIASDRNLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECRDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGSRQCK

Query:  LTFGSQVVAVGHRKSTLY
        L  GS + A G ++++LY
Subjt:  LTFGSQVVAVGHRKSTLY

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-942.1e-2142.97Show/hide
Query:  EALTNSNHSSDWILDSAASVHIASDRNLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECRDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGSRQ
        E +  S   S+W++D+AAS H    R+LF  +  G  G V+MGN   SK +GIGD+ +KT     LVL+DVR VP+++MNLIS   L  DGY   F +++
Subjt:  EALTNSNHSSDWILDSAASVHIASDRNLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECRDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGSRQ

Query:  CKLTFGSQVVAVGHRKSTLYRCQLDVAK
         +LT GS V+A G  + TLYR   ++ +
Subjt:  CKLTFGSQVVAVGHRKSTLYRCQLDVAK

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.5e-0640.4Show/hide
Query:  ALTNSNHSSDWILDSAASVHIASDRN---LFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECRDKLVLRDVRFVPNIKMNLISIGKLAD-DGYRCEF
        AL +   S++W+LDS A+ HI SD N   L   +TGG    V + +G T   S  G  SL T+ R  L L ++ +VPNI  NLIS+ +L + +G   EF
Subjt:  ALTNSNHSSDWILDSAASVHIASDRN---LFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECRDKLVLRDVRFVPNIKMNLISIGKLAD-DGYRCEF

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.1e-0437.36Show/hide
Query:  ALTNSNHSSDWILDSAASVHIASDRN---LFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECRDKLVLRDVRFVPNIKMNLISIGKLAD
        A+ +  ++++W+LDS A+ HI SD N       +TGG    V + +G T   +  G  SL T  R  L L  V +VPNI  NLIS+ +L +
Subjt:  ALTNSNHSSDWILDSAASVHIASDRN---LFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECRDKLVLRDVRFVPNIKMNLISIGKLAD

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCTCCTCCTTTTCCAATAAAGGACCCACAGGCCATTCCCATGGAAACATACTCTCACCATGTTAAGGTGTGGAGCCCAAAACAAACAAGGTCCATCAAATCATT
GTTGCATGCGGCAAGATCATGTGGCGAGAATGCATGCGGCGAGAAATGCATGCGGCGAGAATGCATGCGGCGAGAAAGTCATGCGACGAGAAATGCATGCGACGAGAAAG
TCATGCGGAAATTGCATAAGGCACTGAAGGAGAAACCGAAAGAGATGACGGACGACGATTGGGAAGCTCTGGATGAAGAGGCAGTTGCAAGCATAATGATGTGCTTATCA
ATGGATGTGGCAAGTCTAGTGGCCCACGAGACAACTGCGGTTAAATTGATGGAAGCACTTACAAACAGTAACCATTCATCAGATTGGATATTAGACAGTGCAGCGTCTGT
ACACATAGCTTCAGATAGGAATTTGTTCACATCATTCACAGGAGGACATCATGGTCTAGTGAGGATGGGGAATGGTAGAACCTCCAAAACCAGTGGGATTGGAGATGTTA
GTCTGAAGACAGAGTGTAGAGATAAATTAGTACTGCGAGATGTCAGGTTTGTGCCTAATATCAAGATGAATCTTATTTCTATTGGTAAATTGGCAGATGATGGTTACAGG
TGTGAGTTTGGTAGTCGCCAGTGTAAACTCACGTTCGGATCCCAGGTAGTGGCAGTTGGTCACAGGAAATCTACACTGTACAGATGTCAGTTGGATGTTGCCAAAAGATC
AAGGAGACAGTGGATGCCGGTTAAAGCTGCAGATGGTTGTTGTAGAGGTACAGTTGAGCCAGCAGCAAAGATAGCCAATTTCGATCAGTCCGATCACGATCCTTCAATTC
AGAAACAATTGGGAAGTCCAGGAGATGACTATCGTGAATCCCCAGTTGTCAGACGCACGAATGAATTGAAGAAGTCGCTTAGGCGAGTTGAGGCATCAAAGTGGAAGGCC
AAAGCAGTTGGTCAGTCGTTCAAGTTGGAAGAAGATAACAGGAGTCACCACTTAGCTGAAGTGGGAGTACGTGTCTGTCTTTTTCGTCTGGGAGACAGGTATTTTGAGCC
TTGGAGTTTTACCAAGAAGATCAGAAATAATAGTTGTAGTGGGAGTAGATCCTTGGAGTTTGCCAAGATGATTAAGGCCCATCAAATCATTGTTGCATGCGGCAAGAAAT
TCATGTGGCGAGAATGCATGCGGCGAGAATGCATGCGGCGAGAAAGTCATGCGACGAGAAATGCATGCGACGAGAGTCATGCGGTGAGAAATGCATGCGACGAGAAAAGT
CACTGCAGCAGTGTGAACACAAGAAGAAAATTGCGGCTGTCTTACTTAATTAAGAAGGAAGGAAATTGCGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTCTCCTCCTTTTCCAATAAAGGACCCACAGGCCATTCCCATGGAAACATACTCTCACCATGTTAAGGTGTGGAGCCCAAAACAAACAAGGTCCATCAAATCATT
GTTGCATGCGGCAAGATCATGTGGCGAGAATGCATGCGGCGAGAAATGCATGCGGCGAGAATGCATGCGGCGAGAAAGTCATGCGACGAGAAATGCATGCGACGAGAAAG
TCATGCGGAAATTGCATAAGGCACTGAAGGAGAAACCGAAAGAGATGACGGACGACGATTGGGAAGCTCTGGATGAAGAGGCAGTTGCAAGCATAATGATGTGCTTATCA
ATGGATGTGGCAAGTCTAGTGGCCCACGAGACAACTGCGGTTAAATTGATGGAAGCACTTACAAACAGTAACCATTCATCAGATTGGATATTAGACAGTGCAGCGTCTGT
ACACATAGCTTCAGATAGGAATTTGTTCACATCATTCACAGGAGGACATCATGGTCTAGTGAGGATGGGGAATGGTAGAACCTCCAAAACCAGTGGGATTGGAGATGTTA
GTCTGAAGACAGAGTGTAGAGATAAATTAGTACTGCGAGATGTCAGGTTTGTGCCTAATATCAAGATGAATCTTATTTCTATTGGTAAATTGGCAGATGATGGTTACAGG
TGTGAGTTTGGTAGTCGCCAGTGTAAACTCACGTTCGGATCCCAGGTAGTGGCAGTTGGTCACAGGAAATCTACACTGTACAGATGTCAGTTGGATGTTGCCAAAAGATC
AAGGAGACAGTGGATGCCGGTTAAAGCTGCAGATGGTTGTTGTAGAGGTACAGTTGAGCCAGCAGCAAAGATAGCCAATTTCGATCAGTCCGATCACGATCCTTCAATTC
AGAAACAATTGGGAAGTCCAGGAGATGACTATCGTGAATCCCCAGTTGTCAGACGCACGAATGAATTGAAGAAGTCGCTTAGGCGAGTTGAGGCATCAAAGTGGAAGGCC
AAAGCAGTTGGTCAGTCGTTCAAGTTGGAAGAAGATAACAGGAGTCACCACTTAGCTGAAGTGGGAGTACGTGTCTGTCTTTTTCGTCTGGGAGACAGGTATTTTGAGCC
TTGGAGTTTTACCAAGAAGATCAGAAATAATAGTTGTAGTGGGAGTAGATCCTTGGAGTTTGCCAAGATGATTAAGGCCCATCAAATCATTGTTGCATGCGGCAAGAAAT
TCATGTGGCGAGAATGCATGCGGCGAGAATGCATGCGGCGAGAAAGTCATGCGACGAGAAATGCATGCGACGAGAGTCATGCGGTGAGAAATGCATGCGACGAGAAAAGT
CACTGCAGCAGTGTGAACACAAGAAGAAAATTGCGGCTGTCTTACTTAATTAAGAAGGAAGGAAATTGCGGCTGA
Protein sequenceShow/hide protein sequence
MVSPPFPIKDPQAIPMETYSHHVKVWSPKQTRSIKSLLHAARSCGENACGEKCMRRECMRRESHATRNACDEKVMRKLHKALKEKPKEMTDDDWEALDEEAVASIMMCLS
MDVASLVAHETTAVKLMEALTNSNHSSDWILDSAASVHIASDRNLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECRDKLVLRDVRFVPNIKMNLISIGKLADDGYR
CEFGSRQCKLTFGSQVVAVGHRKSTLYRCQLDVAKRSRRQWMPVKAADGCCRGTVEPAAKIANFDQSDHDPSIQKQLGSPGDDYRESPVVRRTNELKKSLRRVEASKWKA
KAVGQSFKLEEDNRSHHLAEVGVRVCLFRLGDRYFEPWSFTKKIRNNSCSGSRSLEFAKMIKAHQIIVACGKKFMWRECMRRECMRRESHATRNACDESHAVRNACDEKS
HCSSVNTRRKLRLSYLIKKEGNCG