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Lag0012451 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012451
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr1:41183483..41185829
RNA-Seq ExpressionLag0012451
SyntenyLag0012451
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG72479.1 hypothetical protein EZV62_001058 [Acer yangbiense]1.2e-0829.77Show/hide
Query:  RNDLVHNKSIPPPTLHSNWIKKYLSDYPQVNGPSSDNSIVPNNGRAHPVQWSPPPIDFWKVSVDAAWKDGDPCTGLGLVCRNHNGDLMGALSILSELSFP
        RN  +H+K + P +   +W   ++ D+   N   +   +V     + P +WSPP +  +K++ DAA +D D  +G+G V R+ +G +  +L    ++ +P
Subjt:  RNDLVHNKSIPPPTLHSNWIKKYLSDYPQVNGPSSDNSIVPNNGRAHPVQWSPPPIDFWKVSVDAAWKDGDPCTGLGLVCRNHNGDLMGALSILSELSFP

Query:  PPMDELVAILEGLKLAELLGHNQIIVESNCI
        P + E +AIL G +LA  LG    ++ES+ +
Subjt:  PPMDELVAILEGLKLAELLGHNQIIVESNCI

XP_010667704.1 PREDICTED: uncharacterized protein LOC104884717 [Beta vulgaris subsp. vulgaris]2.4e-0941.18Show/hide
Query:  HPVQWSPPPIDFWKVSVDAAWKDGDPCTGLGLVCRNHNGDLMGALSILSELSFPPPMDELVAILEGLKLAELLGHNQIIVESNCI
        H V W+ P  D+ K++VDA  + G+ C+GLG VCR+  G ++G LS+ S +++   + E  A LEG+K+A   G++Q+I+ES+C+
Subjt:  HPVQWSPPPIDFWKVSVDAAWKDGDPCTGLGLVCRNHNGDLMGALSILSELSFPPPMDELVAILEGLKLAELLGHNQIIVESNCI

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]6.8e-1236.09Show/hide
Query:  DRNDLVHNKSIPPPTLHSNWIKKYLSDYPQVNGPSSDNSIVPNNGRAHP--VQWSPPPIDFWKVSVDAAWKDGDPCTGLGLVCRNHNGDLMGALSILSEL
        DRN   H  S+  P L  NWI  Y  +Y Q      +  I P      P   +W PP     KV+ DAA +     TGLGL+ R+H G L+ A S+   +
Subjt:  DRNDLVHNKSIPPPTLHSNWIKKYLSDYPQVNGPSSDNSIVPNNGRAHP--VQWSPPPIDFWKVSVDAAWKDGDPCTGLGLVCRNHNGDLMGALSILSEL

Query:  SFPPPMDELVAILEGLKLAELLGHNQIIVESNC
           P   E+  ILE LKLA    + +++VES+C
Subjt:  SFPPPMDELVAILEGLKLAELLGHNQIIVESNC

XP_022145060.1 uncharacterized protein LOC111014578 [Momordica charantia]7.8e-0835.04Show/hide
Query:  DRNDLVHNKSIPPPTLHSNWIKKYLSDYPQVNGPSSDNSIV----PNNGRAHPVQWSPPPIDFWKVSVDAAWKDGDPCTGLGLVCRNHNGDLMGALSILS
        DRN +   + IP   + S+WI  Y+ D+   + PS  +  +     +N R     WSPPP  + K++VDAA K     TG+G+VCRN  G       IL+
Subjt:  DRNDLVHNKSIPPPTLHSNWIKKYLSDYPQVNGPSSDNSIV----PNNGRAHPVQWSPPPIDFWKVSVDAAWKDGDPCTGLGLVCRNHNGDLMGALSILS

Query:  ELSFPPPMDELVAILEG
          S  P M E +A+ +G
Subjt:  ELSFPPPMDELVAILEG

XP_030924777.1 uncharacterized protein LOC115951770 [Quercus lobata]2.7e-0832.06Show/hide
Query:  DRNDLVHNKSIPPPTLHSNWIKKYLSDYPQVNGPSSDNSIVPNNGRAHPVQWSPPPIDFWKVSVDAAWK-DGDPCTGLGLVCRNHNGDLMGALSILSELS
        +RN ++HN+S  PP L  ++ K  + ++ +    +S     P     H   W+ PP+ F KV+VD A   DG   +G+G++ R+ +G ++ ALS      
Subjt:  DRNDLVHNKSIPPPTLHSNWIKKYLSDYPQVNGPSSDNSIVPNNGRAHPVQWSPPPIDFWKVSVDAAWK-DGDPCTGLGLVCRNHNGDLMGALSILSELS

Query:  FPPPMDELVAILEGLKLAELLGHNQIIVESN
        FP    E +A+ +G+ LA+ L    +I ESN
Subjt:  FPPPMDELVAILEGLKLAELLGHNQIIVESN

TrEMBL top hitse value%identityAlignment
A0A5C7GUI2 RNase H domain-containing protein8.5e-0832.06Show/hide
Query:  RNDLVHNKSIPPPTLHSNWIKKYLSDYPQVNGPSSDNSIVPNNGRAHPVQWSPPPIDFWKVSVDAAWKDGDPCTGLGLVCRNHNGDLMGALSILSELSFP
        RN  VH+  IP       W   YL DY      + DN  +       P +W PP    +K++ DAA  + D   G+ +V RN+ G +M +L  + + S+ 
Subjt:  RNDLVHNKSIPPPTLHSNWIKKYLSDYPQVNGPSSDNSIVPNNGRAHPVQWSPPPIDFWKVSVDAAWKDGDPCTGLGLVCRNHNGDLMGALSILSELSFP

Query:  PPMDELVAILEGLKLAELLGHNQIIVESNCI
        P + E +AIL+G+ LA  LG     +E N +
Subjt:  PPMDELVAILEGLKLAELLGHNQIIVESNCI

A0A5C7ITL2 RNase H domain-containing protein5.9e-0929.77Show/hide
Query:  RNDLVHNKSIPPPTLHSNWIKKYLSDYPQVNGPSSDNSIVPNNGRAHPVQWSPPPIDFWKVSVDAAWKDGDPCTGLGLVCRNHNGDLMGALSILSELSFP
        RN  +H+K + P +   +W   ++ D+   N   +   +V     + P +WSPP +  +K++ DAA +D D  +G+G V R+ +G +  +L    ++ +P
Subjt:  RNDLVHNKSIPPPTLHSNWIKKYLSDYPQVNGPSSDNSIVPNNGRAHPVQWSPPPIDFWKVSVDAAWKDGDPCTGLGLVCRNHNGDLMGALSILSELSFP

Query:  PPMDELVAILEGLKLAELLGHNQIIVESNCI
        P + E +AIL G +LA  LG    ++ES+ +
Subjt:  PPMDELVAILEGLKLAELLGHNQIIVESNCI

A0A6J1BQ49 uncharacterized protein LOC1110047863.3e-1236.09Show/hide
Query:  DRNDLVHNKSIPPPTLHSNWIKKYLSDYPQVNGPSSDNSIVPNNGRAHP--VQWSPPPIDFWKVSVDAAWKDGDPCTGLGLVCRNHNGDLMGALSILSEL
        DRN   H  S+  P L  NWI  Y  +Y Q      +  I P      P   +W PP     KV+ DAA +     TGLGL+ R+H G L+ A S+   +
Subjt:  DRNDLVHNKSIPPPTLHSNWIKKYLSDYPQVNGPSSDNSIVPNNGRAHP--VQWSPPPIDFWKVSVDAAWKDGDPCTGLGLVCRNHNGDLMGALSILSEL

Query:  SFPPPMDELVAILEGLKLAELLGHNQIIVESNC
           P   E+  ILE LKLA    + +++VES+C
Subjt:  SFPPPMDELVAILEGLKLAELLGHNQIIVESNC

A0A6J1CTE3 uncharacterized protein LOC1110145783.8e-0835.04Show/hide
Query:  DRNDLVHNKSIPPPTLHSNWIKKYLSDYPQVNGPSSDNSIV----PNNGRAHPVQWSPPPIDFWKVSVDAAWKDGDPCTGLGLVCRNHNGDLMGALSILS
        DRN +   + IP   + S+WI  Y+ D+   + PS  +  +     +N R     WSPPP  + K++VDAA K     TG+G+VCRN  G       IL+
Subjt:  DRNDLVHNKSIPPPTLHSNWIKKYLSDYPQVNGPSSDNSIV----PNNGRAHPVQWSPPPIDFWKVSVDAAWKDGDPCTGLGLVCRNHNGDLMGALSILS

Query:  ELSFPPPMDELVAILEG
          S  P M E +A+ +G
Subjt:  ELSFPPPMDELVAILEG

A0A6P9EAW2 uncharacterized protein LOC1183445714.2e-0728.24Show/hide
Query:  RNDLVHNKSIPPPTLHSNWIKKYLSDYPQVNGPSSDNSIVPNNGRAHPVQWSPPPIDFWKVSVDAAWKDGDPCTGLGLVCRNHNGDLMGALSILSELSFP
        RN+ V  +    P   ++  K  +SD   +      NS          V WSPPP+  WK++ DAA        G+G++ RNH G ++    +   L   
Subjt:  RNDLVHNKSIPPPTLHSNWIKKYLSDYPQVNGPSSDNSIVPNNGRAHPVQWSPPPIDFWKVSVDAAWKDGDPCTGLGLVCRNHNGDLMGALSILSELSFP

Query:  PPMDELVAILEGLKLAELLGHNQIIVESNCI
        P + E +  LE  +L   LG   II+E + +
Subjt:  PPMDELVAILEGLKLAELLGHNQIIVESNCI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.6e-0533.68Show/hide
Query:  PNNGRAHPVQWSPPPIDFWKVSVDAAWKDGDPCTGLGLVCRNHNGDL--MGALSILSELSFPPPMDELVAILEGLKLAEL----LGHNQIIVESN
        P   R   VQW  PP  + K + DA W+  +P  G+G + RN +G +  MGA ++      P   + L A LE L+ A L      + +II ES+
Subjt:  PNNGRAHPVQWSPPPIDFWKVSVDAAWKDGDPCTGLGLVCRNHNGDL--MGALSILSELSFPPPMDELVAILEGLKLAEL----LGHNQIIVESN

AT4G29090.1 Ribonuclease H-like superfamily protein4.3e-0431.58Show/hide
Query:  PNNGRAHPVQWSPPPIDFWKVSVDAAWKDGDPCTGLGLVCRNHNGDL--MGALSILSELSFPPPMDELVAILEGLKLAEL----LGHNQIIVESN
        P   R+   +W PPP  + K + DA W   +   G+G V RN  G++  MGA ++      P     L A LE ++ A L      +N +I ES+
Subjt:  PNNGRAHPVQWSPPPIDFWKVSVDAAWKDGDPCTGLGLVCRNHNGDL--MGALSILSELSFPPPMDELVAILEGLKLAEL----LGHNQIIVESN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCCCAGTTTCACCTGGTTCAGCCCGAAACGCCTCTGAATGCCTTAAAACTCTAGATCAAGAGAACAAGTATTTAAACCATCCTTCATCACTGAAGAAGGGATC
CCAAACTCTATTCTCTACTCTTCCCTCTTGCTCTCTTGCTCTCCTATTTCTGCTTTATGACTTAAGCATCGGACGCGGTGTGCAGGTTTTCTGTCTTGCAAGCCACGTCT
TCCCCTCACCAACAAATTTACCGCTAGTGGCACGTGAAGATAGAAATGATCTTGTGCATAATAAGTCGATTCCTCCTCCAACGCTCCATAGCAATTGGATTAAAAAATAC
TTATCTGATTATCCCCAAGTGAATGGTCCTTCGTCTGATAATTCGATAGTTCCAAACAATGGCAGAGCTCATCCTGTTCAGTGGTCTCCCCCTCCGATTGATTTTTGGAA
GGTCAGTGTGGATGCTGCTTGGAAAGATGGCGATCCTTGCACTGGATTGGGTCTAGTCTGTAGGAATCATAATGGAGATCTCATGGGAGCTTTATCTATTCTTTCTGAGT
TATCCTTCCCTCCTCCTATGGACGAATTAGTGGCCATTTTGGAGGGTTTAAAGCTTGCTGAACTTCTAGGGCATAATCAGATAATTGTGGAATCAAATTGTATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCGCCCCAGTTTCACCTGGTTCAGCCCGAAACGCCTCTGAATGCCTTAAAACTCTAGATCAAGAGAACAAGTATTTAAACCATCCTTCATCACTGAAGAAGGGATC
CCAAACTCTATTCTCTACTCTTCCCTCTTGCTCTCTTGCTCTCCTATTTCTGCTTTATGACTTAAGCATCGGACGCGGTGTGCAGGTTTTCTGTCTTGCAAGCCACGTCT
TCCCCTCACCAACAAATTTACCGCTAGTGGCACGTGAAGATAGAAATGATCTTGTGCATAATAAGTCGATTCCTCCTCCAACGCTCCATAGCAATTGGATTAAAAAATAC
TTATCTGATTATCCCCAAGTGAATGGTCCTTCGTCTGATAATTCGATAGTTCCAAACAATGGCAGAGCTCATCCTGTTCAGTGGTCTCCCCCTCCGATTGATTTTTGGAA
GGTCAGTGTGGATGCTGCTTGGAAAGATGGCGATCCTTGCACTGGATTGGGTCTAGTCTGTAGGAATCATAATGGAGATCTCATGGGAGCTTTATCTATTCTTTCTGAGT
TATCCTTCCCTCCTCCTATGGACGAATTAGTGGCCATTTTGGAGGGTTTAAAGCTTGCTGAACTTCTAGGGCATAATCAGATAATTGTGGAATCAAATTGTATCTAG
Protein sequenceShow/hide protein sequence
MAAPVSPGSARNASECLKTLDQENKYLNHPSSLKKGSQTLFSTLPSCSLALLFLLYDLSIGRGVQVFCLASHVFPSPTNLPLVAREDRNDLVHNKSIPPPTLHSNWIKKY
LSDYPQVNGPSSDNSIVPNNGRAHPVQWSPPPIDFWKVSVDAAWKDGDPCTGLGLVCRNHNGDLMGALSILSELSFPPPMDELVAILEGLKLAELLGHNQIIVESNCI