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Lag0012538 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012538
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr1:42002242..42002990
RNA-Seq ExpressionLag0012538
SyntenyLag0012538
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0755499.1 hypothetical protein [Gossypium gossypioides]1.1e-1039.18Show/hide
Query:  PRSVVKWLPPEEGWYKVNVDAAYCGDLSRTGAEIVVRDEVGRVMLPAAVRHDHVGNSDLAEGLAVVDGMRLVVEMGLASVVLETDSMRVYVLLQDST
        PRS+VKW PP +GW+KVNVDA      +R   + ++R++ G +M     RH+ V +  +AE +AV+ G++  ++MG + V+LE+DS  V   +Q S+
Subjt:  PRSVVKWLPPEEGWYKVNVDAAYCGDLSRTGAEIVVRDEVGRVMLPAAVRHDHVGNSDLAEGLAVVDGMRLVVEMGLASVVLETDSMRVYVLLQDST

XP_022135942.1 uncharacterized protein LOC111007775 [Momordica charantia]6.6e-1136.36Show/hide
Query:  LVDWAVNYLAAFRGASQA-----YCEGSRGVPRSVVKWLPPEEGWYKVNVDAAYCGDLSRTGAEIVVRDEVGRVMLPAAVRHDHVGNSDLAEGLAVVDGM
        +VDW  +YL  ++ A +        +G  G    V  W PP   ++KVNVDAA+       G +I++RD    V+L A     HV +  LAE LA  +G+
Subjt:  LVDWAVNYLAAFRGASQA-----YCEGSRGVPRSVVKWLPPEEGWYKVNVDAAYCGDLSRTGAEIVVRDEVGRVMLPAAVRHDHVGNSDLAEGLAVVDGM

Query:  RLVVEMGLASVVLETDSMRVYVLLQDSTMVDLSEFGVLIFEAR
         L +E GL    +ETDS +V+ LL+ +   D SE GVL    R
Subjt:  RLVVEMGLASVVLETDSMRVYVLLQDSTMVDLSEFGVLIFEAR

XP_022139684.1 uncharacterized protein LOC111010533 [Momordica charantia]1.7e-1132.12Show/hide
Query:  RVPPAGLVDWAVNYLAAFRGASQAYCEGSRGVPRSVVK------------WLPPEEGWYKVNVDAAYCG-DLSRTGAEIVVRDEVGRVMLPAAVRHDHVG
        RV    L  W   Y+A F+  +  +   ++ V +S  +            W P EEG +K+  DA++   D +     I++RD  G+V+  A    +HV 
Subjt:  RVPPAGLVDWAVNYLAAFRGASQAYCEGSRGVPRSVVK------------WLPPEEGWYKVNVDAAYCG-DLSRTGAEIVVRDEVGRVMLPAAVRHDHVG

Query:  NSDLAEGLAVVDGMRLVVEMGLASVVLETDSMRVYVL
        + D AE LA V+G+R+ +E G++ ++LETDS+R+Y L
Subjt:  NSDLAEGLAVVDGMRLVVEMGLASVVLETDSMRVYVL

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]2.2e-1434.78Show/hide
Query:  LVDWAVNYLAAFRGASQAYCEGSRGVPRSVVKWLPPEEGWYKVNVDAAYCGDLSRTGAEIVVRDEVGRVMLPAAVRHDHVGNSDLAEGLAVVDGMRLVVE
        LV+WA  Y+  FR A+     G R    + V WLPP++  YK+N DA++       G  I++R++ G+VM  A    +++ + D+AE +  V+G++L  +
Subjt:  LVDWAVNYLAAFRGASQAYCEGSRGVPRSVVKWLPPEEGWYKVNVDAAYCGDLSRTGAEIVVRDEVGRVMLPAAVRHDHVGNSDLAEGLAVVDGMRLVVE

Query:  MGLASVVLETDSMRVYVLLQDSTMVDLSEFGVLIFEAR
        +G+  V+LETDS R++ L    +  DLSE G ++ +A+
Subjt:  MGLASVVLETDSMRVYVLLQDSTMVDLSEFGVLIFEAR

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]1.1e-1037.31Show/hide
Query:  LVDWAVNYLAAFRGASQAYCEGSRGV-PRSVVKWLPPEEGWYKVNVDAAYCGDLSRTGAEIVVRDEVGRVMLPAAVRHDHVGNSDLAEGLAVVDGMRLVV
        LV W+ NYL  ++ A ++         P  V  W PP     KVNVDAA+  +    G  +++RD  G V L A        + D  EG AV +G+ L V
Subjt:  LVDWAVNYLAAFRGASQAYCEGSRGV-PRSVVKWLPPEEGWYKVNVDAAYCGDLSRTGAEIVVRDEVGRVMLPAAVRHDHVGNSDLAEGLAVVDGMRLVV

Query:  EMGLASVVLETDSMRVYVLLQDSTMVDLSEFGVL
        E G     +ETDS+R++ LL  +  VD SE GVL
Subjt:  EMGLASVVLETDSMRVYVLLQDSTMVDLSEFGVL

TrEMBL top hitse value%identityAlignment
A0A6J1C467 uncharacterized protein LOC1110077753.2e-1136.36Show/hide
Query:  LVDWAVNYLAAFRGASQA-----YCEGSRGVPRSVVKWLPPEEGWYKVNVDAAYCGDLSRTGAEIVVRDEVGRVMLPAAVRHDHVGNSDLAEGLAVVDGM
        +VDW  +YL  ++ A +        +G  G    V  W PP   ++KVNVDAA+       G +I++RD    V+L A     HV +  LAE LA  +G+
Subjt:  LVDWAVNYLAAFRGASQA-----YCEGSRGVPRSVVKWLPPEEGWYKVNVDAAYCGDLSRTGAEIVVRDEVGRVMLPAAVRHDHVGNSDLAEGLAVVDGM

Query:  RLVVEMGLASVVLETDSMRVYVLLQDSTMVDLSEFGVLIFEAR
         L +E GL    +ETDS +V+ LL+ +   D SE GVL    R
Subjt:  RLVVEMGLASVVLETDSMRVYVLLQDSTMVDLSEFGVLIFEAR

A0A6J1CDQ4 uncharacterized protein LOC1110105338.4e-1232.12Show/hide
Query:  RVPPAGLVDWAVNYLAAFRGASQAYCEGSRGVPRSVVK------------WLPPEEGWYKVNVDAAYCG-DLSRTGAEIVVRDEVGRVMLPAAVRHDHVG
        RV    L  W   Y+A F+  +  +   ++ V +S  +            W P EEG +K+  DA++   D +     I++RD  G+V+  A    +HV 
Subjt:  RVPPAGLVDWAVNYLAAFRGASQAYCEGSRGVPRSVVK------------WLPPEEGWYKVNVDAAYCG-DLSRTGAEIVVRDEVGRVMLPAAVRHDHVG

Query:  NSDLAEGLAVVDGMRLVVEMGLASVVLETDSMRVYVL
        + D AE LA V+G+R+ +E G++ ++LETDS+R+Y L
Subjt:  NSDLAEGLAVVDGMRLVVEMGLASVVLETDSMRVYVL

A0A6J1CIF1 uncharacterized protein LOC1110112371.1e-1434.78Show/hide
Query:  LVDWAVNYLAAFRGASQAYCEGSRGVPRSVVKWLPPEEGWYKVNVDAAYCGDLSRTGAEIVVRDEVGRVMLPAAVRHDHVGNSDLAEGLAVVDGMRLVVE
        LV+WA  Y+  FR A+     G R    + V WLPP++  YK+N DA++       G  I++R++ G+VM  A    +++ + D+AE +  V+G++L  +
Subjt:  LVDWAVNYLAAFRGASQAYCEGSRGVPRSVVKWLPPEEGWYKVNVDAAYCGDLSRTGAEIVVRDEVGRVMLPAAVRHDHVGNSDLAEGLAVVDGMRLVVE

Query:  MGLASVVLETDSMRVYVLLQDSTMVDLSEFGVLIFEAR
        +G+  V+LETDS R++ L    +  DLSE G ++ +A+
Subjt:  MGLASVVLETDSMRVYVLLQDSTMVDLSEFGVLIFEAR

A0A6J1DBJ7 uncharacterized protein LOC1110189735.5e-1137.31Show/hide
Query:  LVDWAVNYLAAFRGASQAYCEGSRGV-PRSVVKWLPPEEGWYKVNVDAAYCGDLSRTGAEIVVRDEVGRVMLPAAVRHDHVGNSDLAEGLAVVDGMRLVV
        LV W+ NYL  ++ A ++         P  V  W PP     KVNVDAA+  +    G  +++RD  G V L A        + D  EG AV +G+ L V
Subjt:  LVDWAVNYLAAFRGASQAYCEGSRGV-PRSVVKWLPPEEGWYKVNVDAAYCGDLSRTGAEIVVRDEVGRVMLPAAVRHDHVGNSDLAEGLAVVDGMRLVV

Query:  EMGLASVVLETDSMRVYVLLQDSTMVDLSEFGVL
        E G     +ETDS+R++ LL  +  VD SE GVL
Subjt:  EMGLASVVLETDSMRVYVLLQDSTMVDLSEFGVL

A0A7J9D462 Uncharacterized protein5.5e-1139.18Show/hide
Query:  PRSVVKWLPPEEGWYKVNVDAAYCGDLSRTGAEIVVRDEVGRVMLPAAVRHDHVGNSDLAEGLAVVDGMRLVVEMGLASVVLETDSMRVYVLLQDST
        PRS+VKW PP +GW+KVNVDA      +R   + ++R++ G +M     RH+ V +  +AE +AV+ G++  ++MG + V+LE+DS  V   +Q S+
Subjt:  PRSVVKWLPPEEGWYKVNVDAAYCGDLSRTGAEIVVRDEVGRVMLPAAVRHDHVGNSDLAEGLAVVDGMRLVVEMGLASVVLETDSMRVYVLLQDST

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTGTGTGCTTTGTGGTTGGCATGAGGAGTCATGGTTGTCGAAACCAACAGAAGTTTAGAGGGCGGGTTCCTCCAGCAGGGCTTGTGGATTGGGCGGTGAACTATCT
TGCTGCTTTTCGAGGGGCTTCTCAGGCCTATTGTGAAGGGTCTAGAGGAGTGCCTCGGAGTGTAGTAAAATGGCTCCCGCCGGAGGAGGGATGGTATAAGGTGAACGTGG
ATGCTGCATATTGTGGGGACCTATCTCGGACCGGTGCAGAAATTGTTGTTCGGGATGAGGTGGGGCGAGTCATGCTGCCAGCTGCTGTTAGGCATGACCATGTGGGGAAT
TCAGATTTGGCAGAGGGTCTGGCGGTGGTGGACGGAATGAGACTTGTGGTGGAAATGGGTTTAGCTTCGGTAGTCCTTGAGACAGATTCTATGCGGGTTTATGTGCTGCT
GCAAGATTCTACTATGGTGGATCTGTCTGAGTTCGGTGTGCTGATCTTTGAGGCTCGAAAGGGGTGCCTGTGCATTTCCAACTCAGATTCAGTTTTACAAGGAGGGAAGG
AAACCGTGTCGTCCATGAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGTGTGTGCTTTGTGGTTGGCATGAGGAGTCATGGTTGTCGAAACCAACAGAAGTTTAGAGGGCGGGTTCCTCCAGCAGGGCTTGTGGATTGGGCGGTGAACTATCT
TGCTGCTTTTCGAGGGGCTTCTCAGGCCTATTGTGAAGGGTCTAGAGGAGTGCCTCGGAGTGTAGTAAAATGGCTCCCGCCGGAGGAGGGATGGTATAAGGTGAACGTGG
ATGCTGCATATTGTGGGGACCTATCTCGGACCGGTGCAGAAATTGTTGTTCGGGATGAGGTGGGGCGAGTCATGCTGCCAGCTGCTGTTAGGCATGACCATGTGGGGAAT
TCAGATTTGGCAGAGGGTCTGGCGGTGGTGGACGGAATGAGACTTGTGGTGGAAATGGGTTTAGCTTCGGTAGTCCTTGAGACAGATTCTATGCGGGTTTATGTGCTGCT
GCAAGATTCTACTATGGTGGATCTGTCTGAGTTCGGTGTGCTGATCTTTGAGGCTCGAAAGGGGTGCCTGTGCATTTCCAACTCAGATTCAGTTTTACAAGGAGGGAAGG
AAACCGTGTCGTCCATGAGTTAG
Protein sequenceShow/hide protein sequence
MRVCFVVGMRSHGCRNQQKFRGRVPPAGLVDWAVNYLAAFRGASQAYCEGSRGVPRSVVKWLPPEEGWYKVNVDAAYCGDLSRTGAEIVVRDEVGRVMLPAAVRHDHVGN
SDLAEGLAVVDGMRLVVEMGLASVVLETDSMRVYVLLQDSTMVDLSEFGVLIFEARKGCLCISNSDSVLQGGKETVSSMS