CuGenDBv2

Gene ID	Lag0012595
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Mediator of RNA polymerase II transcription subunit 4
Genome location	chr1:42521694..42522917
RNA-Seq Expression	Lag0012595
Synteny	Lag0012595
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0016592 - mediator complex (cellular component) GO:0070847 - core mediator complex (cellular component) GO:0003712 - transcription coregulator activity (molecular function)
InterPro domains	IPR019258 - Mediator complex, subunit Med4

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004142109.1 mediator of RNA polymerase II transcription subunit 4 [Cucumis sativus]

1.3e-202

93.12

Show/hide

Query:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL
        M+QHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSS TPSSTLLPLLPPLPRAQALLLQMASL+SKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV
        TSQ+QSSPST LDSTPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIA+EIRAKDAALRAFANKLK+AEQVLDVLFDDYADYQRPRR KT+ D 
Subjt:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV

Query:  ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLA
        ENESLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQ+EQ+RASQLYNFA+LDVGLPKAVE+TEKTIEPMIEPPAPV  DANP  
Subjt:  ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLA

Query:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSEE
         LAAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPP+DSLPV RVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTS+E
Subjt:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSEE

Query:  GSSDDDD
        GSS+DDD
Subjt:  GSSDDDD

XP_008449288.1 PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Cucumis melo]

1.7e-205

93.37

Show/hide

Query:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL
        M+QHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSN+SS TPSSTLLPLLPPLPRAQALLLQMASL+SKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV
        TSQ+QSSPST LDSTPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIA+EIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKT+   
Subjt:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV

Query:  ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLA
        ENESLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQ+EQ+RASQLYNFA+LDVGLPKAVE+TEKTIEPMIEPPAPV  DANPL+
Subjt:  ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLA

Query:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSEE
        N+AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPP+DSLPV RVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTS+E
Subjt:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSEE

Query:  GSSDDDD
        GSS+DDD
Subjt:  GSSDDDD

XP_022143910.1 mediator of RNA polymerase II transcription subunit 4 [Momordica charantia]

8.6e-210

95.1

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Query:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL
        M+QHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ NLSSPTPSSTLLPLLPPLPRAQALLLQMA+L+SKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV
         SQ+QSSPSTPLD+TPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIA+EIRAKDAALRAFANKLKDAEQVLDVLFDDYADY+RP+RVKTKDDV
Subjt:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV

Query:  ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLA
        EN+SLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQ+RASQLYNFADLDVGLPKAVE+TEKTIEPMIEPPAPVPTDANPLA
Subjt:  ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLA

Query:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEP-QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSE
        NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPV RVDEP QLRPNALPGLHKPPEPIQVR VQLDILDQDDDSSDYTS+
Subjt:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEP-QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSE

Query:  EGSSDDDD
        EGSS+DDD
Subjt:  EGSSDDDD

XP_023518528.1 mediator of RNA polymerase II transcription subunit 4 [Cucurbita pepo subsp. pepo]

5.4e-204

93.63

Show/hide

Query:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL
        M+QHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASL+SKLFEV PNR+LWLTAFRGSLPTFL
Subjt:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV
         SQ+QS+PSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIA+E+RAKDAALRAFANKLKDAEQVLDVLFDDYADYQ  +RVKT DDV
Subjt:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV

Query:  ENESLC-STTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPL
        ENESLC STTVASQLKLSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQEEQ+RASQLY+FADLDVGLPK+VE+TEKTIEPMIEPPAPVPTDANPL
Subjt:  ENESLC-STTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPL

Query:  ANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSE
        A LA IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLR NALPGLH+P EPIQVRHVQLDILDQDDDSSDY SE
Subjt:  ANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSE

Query:  EGSSDDDD
        EGSS+DDD
Subjt:  EGSSDDDD

XP_038882754.1 mediator of RNA polymerase II transcription subunit 4 [Benincasa hispida]

5.1e-210

94.35

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Query:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL
        M+QHQIVQSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ N+SSPTPSSTLLPLLPPLPRAQALLLQMASL+SKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV
        TSQ+QSSPST LDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIA+EIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVK KDD 
Subjt:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV

Query:  ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLA
        ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQ+EQ+RASQLYNFA+LD+GLPKAVE+TEKTIEPMIEPPAPVPTDANPL+
Subjt:  ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLA

Query:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSEE
        N+A+IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPP+DSLPV RVDEPQLRPNA PGLHKPPEPIQVRHVQLDILDQDDDSSDYTS+E
Subjt:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSEE

Query:  GSSDDDD
        GSS+DDD
Subjt:  GSSDDDD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KXB7 Mediator of RNA polymerase II transcription subunit 4

6.5e-203

93.12

Show/hide

Query:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL
        M+QHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSS TPSSTLLPLLPPLPRAQALLLQMASL+SKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV
        TSQ+QSSPST LDSTPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIA+EIRAKDAALRAFANKLK+AEQVLDVLFDDYADYQRPRR KT+ D 
Subjt:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV

Query:  ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLA
        ENESLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQ+EQ+RASQLYNFA+LDVGLPKAVE+TEKTIEPMIEPPAPV  DANP  
Subjt:  ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLA

Query:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSEE
         LAAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPP+DSLPV RVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTS+E
Subjt:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSEE

Query:  GSSDDDD
        GSS+DDD
Subjt:  GSSDDDD

A0A1S3BLP6 Mediator of RNA polymerase II transcription subunit 4

8.2e-206

93.37

Show/hide

Query:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL
        M+QHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSN+SS TPSSTLLPLLPPLPRAQALLLQMASL+SKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV
        TSQ+QSSPST LDSTPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIA+EIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKT+   
Subjt:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV

Query:  ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLA
        ENESLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQ+EQ+RASQLYNFA+LDVGLPKAVE+TEKTIEPMIEPPAPV  DANPL+
Subjt:  ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLA

Query:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSEE
        N+AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPP+DSLPV RVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTS+E
Subjt:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSEE

Query:  GSSDDDD
        GSS+DDD
Subjt:  GSSDDDD

A0A5A7TZC1 Mediator of RNA polymerase II transcription subunit 4

8.2e-206

93.37

Show/hide

Query:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL
        M+QHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSN+SS TPSSTLLPLLPPLPRAQALLLQMASL+SKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV
        TSQ+QSSPST LDSTPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIA+EIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKT+   
Subjt:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV

Query:  ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLA
        ENESLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQ+EQ+RASQLYNFA+LDVGLPKAVE+TEKTIEPMIEPPAPV  DANPL+
Subjt:  ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLA

Query:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSEE
        N+AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPP+DSLPV RVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTS+E
Subjt:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSEE

Query:  GSSDDDD
        GSS+DDD
Subjt:  GSSDDDD

A0A6J1CQ51 Mediator of RNA polymerase II transcription subunit 4

4.2e-210

95.1

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Query:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL
        M+QHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ NLSSPTPSSTLLPLLPPLPRAQALLLQMA+L+SKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV
         SQ+QSSPSTPLD+TPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIA+EIRAKDAALRAFANKLKDAEQVLDVLFDDYADY+RP+RVKTKDDV
Subjt:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV

Query:  ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLA
        EN+SLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQ+RASQLYNFADLDVGLPKAVE+TEKTIEPMIEPPAPVPTDANPLA
Subjt:  ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLA

Query:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEP-QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSE
        NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPV RVDEP QLRPNALPGLHKPPEPIQVR VQLDILDQDDDSSDYTS+
Subjt:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEP-QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSE

Query:  EGSSDDDD
        EGSS+DDD
Subjt:  EGSSDDDD

A0A6J1HH73 Mediator of RNA polymerase II transcription subunit 4

1.1e-202

93.14

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Query:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL
        M+QHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQN SNLSSPTPSSTLLPLLPPLPRAQALLLQMASL+SKLFEV PNR+LWLTAFRGSLPTFL
Subjt:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV
         SQ+QS+PSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIA+E+RAKDAALRAFANKLKDAEQVLDVLFDDYADYQ  +RVKT DDV
Subjt:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV

Query:  ENESLCS-TTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPL
        ENESLCS TTVASQLKLSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQEEQ+RASQLY FADLDVGLPK+VE+TEKTIEPMIE PAPVPTDANPL
Subjt:  ENESLCS-TTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPL

Query:  ANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSE
        A LA IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLR NALPGLH+P EPIQVRHVQLDILDQDDDSSDY SE
Subjt:  ANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSE

Query:  EGSSDDDD
        EGSS+DDD
Subjt:  EGSSDDDD

SwissProt top hits

e value

%identity

Alignment

Q54D00 Putative mediator of RNA polymerase II transcription subunit 4

3.5e-04

29.7

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Query:  LTSQSQSSPSTPLD--STPSTSKEILSLFNVL--QTQLFE-AVAELQEILDLQDSKQKIAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRV
        L SQ       P+D  S  +T   +L L N L    ++++  + +L++   +Q    +I  EI  KD  +   A  LKD E  L+       D       
Subjt:  LTSQSQSSPSTPLD--STPSTSKEILSLFNVL--QTQLFE-AVAELQEILDLQDSKQKIAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRV

Query:  KTKDDVENESL-----------CSTTVASQLKLSDILSYAHRISYTTFAPPEFG-AGQAPLRGAL-PPAPQEEQLRASQL-----------YNFADLDVG
           D + NE L               V  ++   D++SYAH+IS TT AP  FG    APL     PPAPQ+E +R+S L           Y  A++DV 
Subjt:  KTKDDVENESL-----------CSTTVASQLKLSDILSYAHRISYTTFAPPEFG-AGQAPLRGAL-PPAPQEEQLRASQL-----------YNFADLDVG

Query:  LP
         P
Subjt:  LP

Q9LZ00 Mediator of RNA polymerase II transcription subunit 4

5.4e-138

64.98

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Query:  MIQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQSNL--------------SSPTPSSTLLPLLPPLPRAQALLLQMASLSSKL
        M+QHQIVQSPARLGLT P SPS+QNPTP     P    S QS H   Q Q NL              S+   SS LL LLPPLPRAQALL QMA L+SKL
Subjt:  MIQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQSNL--------------SSPTPSSTLLPLLPPLPRAQALLLQMASLSSKL

Query:  FEVSPNRSLWLTAFRGSLPTFLTSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAFEIRAKDAALRAFANKLKDAEQVL
        F+VSPNR++WL+AFRGSLP+FL+S S   P    + +PS++KEILS FN LQTQLFEAV ELQEILDLQD+KQK+A EI++KD++L AFANKLKDAE+VL
Subjt:  FEVSPNRSLWLTAFRGSLPTFLTSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAFEIRAKDAALRAFANKLKDAEQVL

Query:  DVLFDDYADYQRPRRVKTKDDVEN----ESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKA
        D+L DDY+DY++P+R K ++D E+     S  STTV+SQLKL DIL+YAH+ISYTTFAPPEFGAGQAPLRGALPPAPQ+EQ+RASQLY FADLD+GLPK 
Subjt:  DVLFDDYADYQRPRRVKTKDDVEN----ESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKA

Query:  VETTEKTIEPMIEPPAPVPTDANPLANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQ-LRPNALPGLHKP
        VE  EK +E +IEPP P         +++AI  LLPPNI VPSGWKPGMPVELPRDLP+PPPGWKPGDPV LPPL+S+   R ++ Q +RP+   GLH+P
Subjt:  VETTEKTIEPMIEPPAPVPTDANPLANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQ-LRPNALPGLHKP

Query:  PEPIQVRHVQLDILDQDDDSSDYTSEEGSSDDDD
        P+ IQVR VQLDIL +DDDSSDY+S++ SSDD+D
Subjt:  PEPIQVRHVQLDILDQDDDSSDYTSEEGSSDDDD

Arabidopsis top hits

e value

%identity

Alignment

AT5G02850.1 hydroxyproline-rich glycoprotein family protein

3.8e-139

64.98

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Query:  MIQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQSNL--------------SSPTPSSTLLPLLPPLPRAQALLLQMASLSSKL
        M+QHQIVQSPARLGLT P SPS+QNPTP     P    S QS H   Q Q NL              S+   SS LL LLPPLPRAQALL QMA L+SKL
Subjt:  MIQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQSNL--------------SSPTPSSTLLPLLPPLPRAQALLLQMASLSSKL

Query:  FEVSPNRSLWLTAFRGSLPTFLTSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAFEIRAKDAALRAFANKLKDAEQVL
        F+VSPNR++WL+AFRGSLP+FL+S S   P    + +PS++KEILS FN LQTQLFEAV ELQEILDLQD+KQK+A EI++KD++L AFANKLKDAE+VL
Subjt:  FEVSPNRSLWLTAFRGSLPTFLTSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAFEIRAKDAALRAFANKLKDAEQVL

Query:  DVLFDDYADYQRPRRVKTKDDVEN----ESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKA
        D+L DDY+DY++P+R K ++D E+     S  STTV+SQLKL DIL+YAH+ISYTTFAPPEFGAGQAPLRGALPPAPQ+EQ+RASQLY FADLD+GLPK 
Subjt:  DVLFDDYADYQRPRRVKTKDDVEN----ESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKA

Query:  VETTEKTIEPMIEPPAPVPTDANPLANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQ-LRPNALPGLHKP
        VE  EK +E +IEPP P         +++AI  LLPPNI VPSGWKPGMPVELPRDLP+PPPGWKPGDPV LPPL+S+   R ++ Q +RP+   GLH+P
Subjt:  VETTEKTIEPMIEPPAPVPTDANPLANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQ-LRPNALPGLHKP

Query:  PEPIQVRHVQLDILDQDDDSSDYTSEEGSSDDDD
        P+ IQVR VQLDIL +DDDSSDY+S++ SSDD+D
Subjt:  PEPIQVRHVQLDILDQDDDSSDYTSEEGSSDDDD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGATTCAGCATCAAATTGTTCAGTCCCCAGCTCGATTGGGCTTGACGAATCCGAATTCTCCCTCTATTCAAAACCCTACCCCTCCAAAATTGCCCCCTTCTCAACAATC
CCATCACCAAAATCAATCCAATCTCTCTTCTCCAACTCCCTCTTCCACCCTTCTCCCTCTCCTTCCTCCTCTTCCTAGAGCTCAAGCTCTTCTCCTTCAAATGGCTTCTT
TATCCTCTAAGCTCTTTGAAGTTTCCCCAAATCGATCCCTTTGGCTCACTGCATTTCGGGGTTCTCTTCCCACTTTTCTTACTTCTCAATCTCAGTCGTCTCCCTCTACG
CCTCTTGATTCTACTCCGTCTACTTCGAAAGAAATTCTGTCCCTGTTTAATGTTCTGCAGACCCAGTTGTTTGAAGCTGTTGCTGAGCTTCAGGAGATTCTCGATCTTCA
AGACTCTAAGCAGAAGATTGCTTTTGAAATACGGGCTAAAGATGCTGCTCTTCGTGCTTTTGCTAATAAGCTCAAGGATGCTGAGCAGGTTCTTGATGTTTTGTTTGATG
ATTATGCGGATTATCAGCGTCCTCGACGTGTTAAAACGAAGGATGATGTTGAAAATGAGTCTTTGTGTTCTACTACTGTTGCATCCCAGTTGAAATTATCTGATATATTG
TCGTATGCTCATAGAATAAGCTATACTACTTTCGCACCGCCTGAATTTGGGGCTGGACAAGCTCCGTTACGCGGGGCACTTCCCCCTGCCCCACAAGAAGAGCAATTGCG
TGCATCCCAGTTGTATAATTTTGCAGATCTTGATGTTGGCTTGCCTAAAGCAGTTGAAACCACTGAGAAAACTATTGAGCCAATGATTGAGCCTCCAGCTCCAGTGCCAA
CAGATGCTAATCCTCTTGCTAATCTGGCTGCTATTCAGGGCCTGCTTCCTCCAAATATTACTGTCCCATCTGGTTGGAAGCCTGGAATGCCTGTGGAATTACCTAGAGAT
TTACCAATGCCCCCTCCTGGATGGAAGCCTGGGGACCCTGTGCCATTACCCCCATTGGACTCTCTTCCTGTTGCTAGAGTTGATGAGCCACAATTGAGGCCTAATGCTCT
TCCAGGATTACACAAACCTCCTGAGCCAATTCAAGTTAGGCATGTTCAGTTGGATATTCTTGATCAAGATGATGATAGCAGTGATTACACTAGTGAAGAAGGAAGCTCTG
ATGATGATGATTGA

mRNA sequence

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Protein sequence

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MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFLTSQSQSSPST
PLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDVENESLCSTTVASQLKLSDIL
SYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLANLAAIQGLLPPNITVPSGWKPGMPVELPRD
LPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSEEGSSDDDD

Lag0012595 (gene) of Sponge gourd (AG-4) v1 genome