; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0012604 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012604
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDNA-binding protein S1FA
Genome locationchr1:42600077..42601507
RNA-Seq ExpressionLag0012604
SyntenyLag0012604
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR006779 - DNA binding protein S1FA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143239.1 DNA-binding protein S1FA [Cucumis sativus]1.6e-2692.96Show/hide
Query:  GNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        GNVIRD +ARGFNPGLIVLLVVGGLL AFLVGNY LYMYAQKTLPPKKKKPVSKKKMKRERLKQG+SAPGE
Subjt:  GNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

XP_008449267.1 PREDICTED: DNA-binding protein S1FA-like [Cucumis melo]8.0e-2692.86Show/hide
Query:  NVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        NVIRD +ARGFNPGLIVLLVVGGLL AFLVGNY LYMYAQKTLPPKKKKPVSKKKMKRERLKQG+SAPGE
Subjt:  NVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

XP_022143745.1 DNA-binding protein S1FA-like [Momordica charantia]6.1e-2692.96Show/hide
Query:  GNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        G VIRDADA GFNPGL+VLLVVGGLLLAFLVGNY LY+YAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
Subjt:  GNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

XP_022962636.1 DNA-binding protein S1FA-like [Cucurbita moschata]2.7e-2692.96Show/hide
Query:  GNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        GNVIR+ADARGFNPGLIVLLVVGGLLLAFL GNY LY+YAQKTLPPK+KKPVSKKKMKRERLKQGISAPGE
Subjt:  GNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

XP_038881351.1 DNA-binding protein S1FA-like [Benincasa hispida]1.5e-2797.18Show/hide
Query:  GNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        GNVIRDADARGFNPGLIVLLVVGGLLLAFL GNY LYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
Subjt:  GNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

TrEMBL top hitse value%identityAlignment
A0A0A0KEM3 DNA-binding protein S1FA7.8e-2792.96Show/hide
Query:  GNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        GNVIRD +ARGFNPGLIVLLVVGGLL AFLVGNY LYMYAQKTLPPKKKKPVSKKKMKRERLKQG+SAPGE
Subjt:  GNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

A0A1S3BLN5 DNA-binding protein S1FA-like3.9e-2692.86Show/hide
Query:  NVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        NVIRD +ARGFNPGLIVLLVVGGLL AFLVGNY LYMYAQKTLPPKKKKPVSKKKMKRERLKQG+SAPGE
Subjt:  NVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

A0A5A7TZ88 DNA-binding protein S1FA-like3.9e-2692.86Show/hide
Query:  NVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        NVIRD +ARGFNPGLIVLLVVGGLL AFLVGNY LYMYAQKTLPPKKKKPVSKKKMKRERLKQG+SAPGE
Subjt:  NVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

A0A6J1CPM9 DNA-binding protein S1FA-like3.0e-2692.96Show/hide
Query:  GNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        G VIRDADA GFNPGL+VLLVVGGLLLAFLVGNY LY+YAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
Subjt:  GNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

A0A6J1HDT2 DNA-binding protein S1FA-like1.3e-2692.96Show/hide
Query:  GNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        GNVIR+ADARGFNPGLIVLLVVGGLLLAFL GNY LY+YAQKTLPPK+KKPVSKKKMKRERLKQGISAPGE
Subjt:  GNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

SwissProt top hitse value%identityAlignment
P42551 DNA-binding protein S1FA12.3e-2075.38Show/hide
Query:  ADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        A+A+G NPGLIVLLVVGG LL FL+ NY LY+YAQK LPP+KKKPVSKKK+KRE+LKQG+  PGE
Subjt:  ADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

P42552 DNA-binding protein S1FA2.5e-2275Show/hide
Query:  IRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        + + +A+G NPGLIVLLV+GGLLL FLVGN+ LY YAQK LPPKKKKP+SKKKMKRERLKQG++ PGE
Subjt:  IRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

P42553 DNA-binding protein S1FA11.8e-2072.86Show/hide
Query:  NVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        N+I +   +G NPG IVLLVV  LL+ F VGNY LYMYAQKTLPP+KKKPVSKKK+KRE+LKQG+SAPGE
Subjt:  NVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

Q42337 DNA-binding protein S1FA23.1e-2064.86Show/hide
Query:  GAQGNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        G+ G  +   +A+G NPGLIVLLV+GGLL+ FL+ NY +YMYAQK LPP+KKKP+SKKK+KRE+LKQG+  PGE
Subjt:  GAQGNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

Q7XLX6 DNA-binding protein S1FA21.8e-2071.43Show/hide
Query:  NVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        NV+ +   +G NPG+IVL+VV   LL F VGNY LY+YAQKTLPP+KKKPVSKKKMKRE+LKQG+SAPGE
Subjt:  NVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

Arabidopsis top hitse value%identityAlignment
AT2G37120.1 S1FA-like DNA-binding protein2.2e-2164.86Show/hide
Query:  GAQGNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        G+ G  +   +A+G NPGLIVLLV+GGLL+ FL+ NY +YMYAQK LPP+KKKP+SKKK+KRE+LKQG+  PGE
Subjt:  GAQGNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

AT3G09735.1 S1FA-like DNA-binding protein2.8e-2173.44Show/hide
Query:  DARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        +++G NPGLIVLLV+GGLLL FLVGN+ LY YAQK LPP+KKKPVSKKKMK+E++KQG+  PGE
Subjt:  DARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

AT3G53370.1 S1FA-like DNA-binding protein1.7e-2175.38Show/hide
Query:  ADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        A+A+G NPGLIVLLVVGG LL FL+ NY LY+YAQK LPP+KKKPVSKKK+KRE+LKQG+  PGE
Subjt:  ADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

AT3G53370.2 S1FA-like DNA-binding protein6.8e-0772.73Show/hide
Query:  YAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        +A K LPP+KKKPVSKKK+KRE+LKQG+  PGE
Subjt:  YAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAATACGGCGTCGTTTCAAACCCCGTGGGCGAAACTGGCTTAAATCCACAATCCGCCATTTTCATATCTCCGTTCCTTTTGTATTTTTCTCGAAGCTTCTGCGGTT
CGTCTTTGTAGTACATAACTACAACAGTAGCTCGTTGCGAACGCCATCTCTTATTCTCTCCGCTTCTGAATTTCAGCCATGGAAGACGATTTCGAGTTCGGTGACAGAGT
CCCGCCGGCCGTCAATCGCATGCAGTAAAATTGGCCTTGGTGCACAGGGAAACGTGATTAGAGATGCAGATGCAAGAGGATTCAATCCAGGACTGATTGTGCTGCTTGTA
GTCGGTGGGCTGCTCTTGGCTTTTCTTGTTGGGAATTACACTCTGTACATGTATGCGCAGAAGACTCTCCCACCAAAAAAGAAGAAACCAGTTTCCAAGAAGAAGATGAA
GAGGGAGAGATTGAAGCAAGGTATCTCTGCACCTGGAGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAATACGGCGTCGTTTCAAACCCCGTGGGCGAAACTGGCTTAAATCCACAATCCGCCATTTTCATATCTCCGTTCCTTTTGTATTTTTCTCGAAGCTTCTGCGGTT
CGTCTTTGTAGTACATAACTACAACAGTAGCTCGTTGCGAACGCCATCTCTTATTCTCTCCGCTTCTGAATTTCAGCCATGGAAGACGATTTCGAGTTCGGTGACAGAGT
CCCGCCGGCCGTCAATCGCATGCAGTAAAATTGGCCTTGGTGCACAGGGAAACGTGATTAGAGATGCAGATGCAAGAGGATTCAATCCAGGACTGATTGTGCTGCTTGTA
GTCGGTGGGCTGCTCTTGGCTTTTCTTGTTGGGAATTACACTCTGTACATGTATGCGCAGAAGACTCTCCCACCAAAAAAGAAGAAACCAGTTTCCAAGAAGAAGATGAA
GAGGGAGAGATTGAAGCAAGGTATCTCTGCACCTGGAGAGTAG
Protein sequenceShow/hide protein sequence
MKIRRRFKPRGRNWLKSTIRHFHISVPFVFFSKLLRFVFVVHNYNSSSLRTPSLILSASEFQPWKTISSSVTESRRPSIACSKIGLGAQGNVIRDADARGFNPGLIVLLV
VGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE