| GenBank top hits | e value | %identity | Alignment |
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| XP_016902883.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Cucumis melo] | 8.4e-252 | 88.52 | Show/hide |
Query: VSVFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKHQAVEWPGLLSSWPSLQMGEYKISSVVKQ
V +F EQA+PARYFSTSFLSQEQHHECRPQSQ+LK+D+TSQMTLDRRLIERSV DE SRS HDHL+WELKHQAVEWP LLSSWPSLQM EYKISS K+
Subjt: VSVFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKHQAVEWPGLLSSWPSLQMGEYKISSVVKQ
Query: SNNTEREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSFSVDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSE
S N E+LV+DEPENVIALAKKALSASKQ A LVDESELVGT LD S DSLSKE RTV+ST+LQDRRSKKR+VPKHVTTIHET N RGKD+RRKTSE
Subjt: SNNTEREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSFSVDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSE
Query: NVDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQ
DPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLM+LDNVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRMVVHIAKQY
Subjt: NVDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQ
Query: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLD
GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNY VRAGN KPSKEELAAHVGITVERLD
Subjt: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLD
Query: KLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLESRAL
KL+FMSRIPRSLQQPVWADQDTT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDG+EKTLLEIGNMFGLSKERVRQLE+RAL
Subjt: KLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLESRAL
Query: YKLKRCCNSQGLAA
YKLKRCCNSQGL A
Subjt: YKLKRCCNSQGLAA
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| XP_016902885.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2 [Cucumis melo] | 8.4e-252 | 88.52 | Show/hide |
Query: VSVFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKHQAVEWPGLLSSWPSLQMGEYKISSVVKQ
V +F EQA+PARYFSTSFLSQEQHHECRPQSQ+LK+D+TSQMTLDRRLIERSV DE SRS HDHL+WELKHQAVEWP LLSSWPSLQM EYKISS K+
Subjt: VSVFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKHQAVEWPGLLSSWPSLQMGEYKISSVVKQ
Query: SNNTEREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSFSVDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSE
S N E+LV+DEPENVIALAKKALSASKQ A LVDESELVGT LD S DSLSKE RTV+ST+LQDRRSKKR+VPKHVTTIHET N RGKD+RRKTSE
Subjt: SNNTEREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSFSVDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSE
Query: NVDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQ
DPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLM+LDNVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRMVVHIAKQY
Subjt: NVDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQ
Query: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLD
GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNY VRAGN KPSKEELAAHVGITVERLD
Subjt: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLD
Query: KLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLESRAL
KL+FMSRIPRSLQQPVWADQDTT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDG+EKTLLEIGNMFGLSKERVRQLE+RAL
Subjt: KLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLESRAL
Query: YKLKRCCNSQGLAA
YKLKRCCNSQGL A
Subjt: YKLKRCCNSQGLAA
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| XP_022143971.1 RNA polymerase sigma factor sigF, chloroplastic [Momordica charantia] | 9.3e-259 | 90.35 | Show/hide |
Query: VSVFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKHQAVEWPGLLSSWPSLQMGEYKISSVVKQ
V + H+QATPARYFSTSF+ QEQHHECRPQSQ+LK+DKTSQMTLDRRLIERSVS DE SR GHDHLVWELKHQA EWPGLLSSWPSLQMGEYKISSV KQ
Subjt: VSVFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKHQAVEWPGLLSSWPSLQMGEYKISSVVKQ
Query: SNNT-EREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLD---SSFSVDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRR
NNT RE+LVEDEPE+VIALAKKALSASKQ ASLV+ESELVGT++D SS S DSL KE VKST+LQDRRSK+RRVPKHVTTIHETYN RGKDTRR
Subjt: SNNT-EREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLD---SSFSVDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRR
Query: KTSENVDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIA
KT+EN DPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLM+L+NVKARLQSQFGREPTLVEWAEA+G+TCQ LQSQLH FRVSREKLINANLRMVVHIA
Subjt: KTSENVDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIA
Query: KQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITV
K+YQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKN+FVR GN KPSKEELAAHVGITV
Subjt: KQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITV
Query: ERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLE
ERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLR+GIEDG+EKTLLEIGNMFGLSKERVRQLE
Subjt: ERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLE
Query: SRALYKLKRCCNSQGLAA
+RALYKLKRCCNSQGL A
Subjt: SRALYKLKRCCNSQGLAA
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| XP_031742499.1 RNA polymerase sigma factor sigF, chloroplastic [Cucumis sativus] | 1.6e-263 | 86.87 | Show/hide |
Query: MEAGLNLLSSSSPFISRCHPRSFLHPSCSS----SSSSSSSSVSVFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEE
MEAGLNLLSSSSPFISRCHPRSFL PSCSS SSSSSSSSV +F EQA+PARYFSTSFLSQEQHHECRPQSQ+LK+D++SQMTL+RRLIERSV DE
Subjt: MEAGLNLLSSSSPFISRCHPRSFLHPSCSS----SSSSSSSSVSVFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEE
Query: SRSGHDHLVWELKHQAVEWPGLLSSWPSLQMGEYKISSVVKQSNNTEREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSFSVDSLSKEQ
SR HDHL+WELKHQAVEWPGLLSSWP +QM EYKISS+ K+S N E+LV+DEPENVIALAKKALSASKQ A LVDE+ELVGT LD S DSLSKE
Subjt: SRSGHDHLVWELKHQAVEWPGLLSSWPSLQMGEYKISSVVKQSNNTEREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSFSVDSLSKEQ
Query: RTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSENVDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARLQSQFGREPTLVE
RTV+ST+LQDRRSKKR+VPKHVTTI E N RGKD+RRKTSE DPNDPLRLFLWGPETKKLLT QEESELIVQIQDLM+LDNVKARLQSQF REPTLVE
Subjt: RTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSENVDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARLQSQFGREPTLVE
Query: WAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLP
WAEALG+TCQ LQSQLH F+ SREKLINANLRMVVHIAKQYQGRGLSLHDLLQ GSLGLMKSVEKFKPQAGCRF +YAYWWIR SI KAIF+HSRTIRLP
Subjt: WAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLP
Query: ENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSP
ENVY LLGKVTEAKNYFVRAGN KPSKEELAA VGITVER DKL+FMSRIPRSLQQPVWADQ+TTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSP
Subjt: ENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSP
Query: KERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLAA
KERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLE+RALYKLKRCCNSQGL A
Subjt: KERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLAA
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| XP_038882876.1 RNA polymerase sigma factor sigF, chloroplastic [Benincasa hispida] | 5.1e-273 | 90.4 | Show/hide |
Query: MEAGLNLLSSSSPFISRCHPRSFLHPSCSSSSSSSSSSVSVFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSG
MEAGLNLLSSSS FISRCHPRSFLHPSC SSSSSSSSVS+FHEQA PARYFSTSFLSQEQHHECRPQSQ+LK+D+TSQ TLDRRLIERSVS DE +RS
Subjt: MEAGLNLLSSSSPFISRCHPRSFLHPSCSSSSSSSSSSVSVFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSG
Query: HDHLVWELKHQAVEWPGLLSSWPSLQMGEYKISSVVKQSNNTEREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSFSVDSLSKEQRTVK
HDHL+WE KHQAVEWPGLLSSWPSLQM EYKISSV KQS N E+LV+DEPENVIALAKKALSASKQ ASLVDESELVGT+LD + DSLSKE RTV+
Subjt: HDHLVWELKHQAVEWPGLLSSWPSLQMGEYKISSVVKQSNNTEREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSFSVDSLSKEQRTVK
Query: STKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSENVDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARLQSQFGREPTLVEWAEA
ST+LQDRRSKKR+VPKHVTTIHET N +GKD+RRKT EN DPNDPLRLFLWGPETKKLLTV+EESELIVQIQDLM+LDNVKARLQSQFGREPTLVEWAEA
Subjt: STKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSENVDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARLQSQFGREPTLVEWAEA
Query: LGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVY
LGLTCQRLQSQL SFR+SREKLINANLRMVVHIAKQYQGRGLSL DLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVY
Subjt: LGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVY
Query: GLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERR
GLLGKVTEAKNYFVRAGN KPSKEELAA VGITVERLDKLLFMSRIPRSLQQPVW DQDTTFQEITADSE+DTPDVSVERELMRRHIRNLLSILSPKERR
Subjt: GLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERR
Query: IIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLAA
IIRLRFGIEDG+EKTLLEIGNMFGLSKERVRQLE+RALYKLKRC NSQGL A
Subjt: IIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLAA
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| TrEMBL top hits | e value | %identity | Alignment |
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| A0A0A0KEQ6 RNA polymerase sigma factor | 7.9e-264 | 86.87 | Show/hide |
Query: MEAGLNLLSSSSPFISRCHPRSFLHPSCSS----SSSSSSSSVSVFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEE
MEAGLNLLSSSSPFISRCHPRSFL PSCSS SSSSSSSSV +F EQA+PARYFSTSFLSQEQHHECRPQSQ+LK+D++SQMTL+RRLIERSV DE
Subjt: MEAGLNLLSSSSPFISRCHPRSFLHPSCSS----SSSSSSSSVSVFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEE
Query: SRSGHDHLVWELKHQAVEWPGLLSSWPSLQMGEYKISSVVKQSNNTEREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSFSVDSLSKEQ
SR HDHL+WELKHQAVEWPGLLSSWP +QM EYKISS+ K+S N E+LV+DEPENVIALAKKALSASKQ A LVDE+ELVGT LD S DSLSKE
Subjt: SRSGHDHLVWELKHQAVEWPGLLSSWPSLQMGEYKISSVVKQSNNTEREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSFSVDSLSKEQ
Query: RTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSENVDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARLQSQFGREPTLVE
RTV+ST+LQDRRSKKR+VPKHVTTI E N RGKD+RRKTSE DPNDPLRLFLWGPETKKLLT QEESELIVQIQDLM+LDNVKARLQSQF REPTLVE
Subjt: RTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSENVDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARLQSQFGREPTLVE
Query: WAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLP
WAEALG+TCQ LQSQLH F+ SREKLINANLRMVVHIAKQYQGRGLSLHDLLQ GSLGLMKSVEKFKPQAGCRF +YAYWWIR SI KAIF+HSRTIRLP
Subjt: WAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLP
Query: ENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSP
ENVY LLGKVTEAKNYFVRAGN KPSKEELAA VGITVER DKL+FMSRIPRSLQQPVWADQ+TTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSP
Subjt: ENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSP
Query: KERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLAA
KERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLE+RALYKLKRCCNSQGL A
Subjt: KERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLAA
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| A0A1S4E3S8 RNA polymerase sigma factor sigF, chloroplastic isoform X1 | 4.1e-252 | 88.52 | Show/hide |
Query: VSVFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKHQAVEWPGLLSSWPSLQMGEYKISSVVKQ
V +F EQA+PARYFSTSFLSQEQHHECRPQSQ+LK+D+TSQMTLDRRLIERSV DE SRS HDHL+WELKHQAVEWP LLSSWPSLQM EYKISS K+
Subjt: VSVFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKHQAVEWPGLLSSWPSLQMGEYKISSVVKQ
Query: SNNTEREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSFSVDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSE
S N E+LV+DEPENVIALAKKALSASKQ A LVDESELVGT LD S DSLSKE RTV+ST+LQDRRSKKR+VPKHVTTIHET N RGKD+RRKTSE
Subjt: SNNTEREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSFSVDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSE
Query: NVDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQ
DPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLM+LDNVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRMVVHIAKQY
Subjt: NVDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQ
Query: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLD
GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNY VRAGN KPSKEELAAHVGITVERLD
Subjt: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLD
Query: KLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLESRAL
KL+FMSRIPRSLQQPVWADQDTT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDG+EKTLLEIGNMFGLSKERVRQLE+RAL
Subjt: KLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLESRAL
Query: YKLKRCCNSQGLAA
YKLKRCCNSQGL A
Subjt: YKLKRCCNSQGLAA
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| A0A1S4E4I4 RNA polymerase sigma factor sigF, chloroplastic isoform X2 | 4.1e-252 | 88.52 | Show/hide |
Query: VSVFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKHQAVEWPGLLSSWPSLQMGEYKISSVVKQ
V +F EQA+PARYFSTSFLSQEQHHECRPQSQ+LK+D+TSQMTLDRRLIERSV DE SRS HDHL+WELKHQAVEWP LLSSWPSLQM EYKISS K+
Subjt: VSVFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKHQAVEWPGLLSSWPSLQMGEYKISSVVKQ
Query: SNNTEREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSFSVDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSE
S N E+LV+DEPENVIALAKKALSASKQ A LVDESELVGT LD S DSLSKE RTV+ST+LQDRRSKKR+VPKHVTTIHET N RGKD+RRKTSE
Subjt: SNNTEREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSFSVDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSE
Query: NVDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQ
DPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLM+LDNVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRMVVHIAKQY
Subjt: NVDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQ
Query: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLD
GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNY VRAGN KPSKEELAAHVGITVERLD
Subjt: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLD
Query: KLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLESRAL
KL+FMSRIPRSLQQPVWADQDTT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDG+EKTLLEIGNMFGLSKERVRQLE+RAL
Subjt: KLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLESRAL
Query: YKLKRCCNSQGLAA
YKLKRCCNSQGL A
Subjt: YKLKRCCNSQGLAA
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| A0A5A7V893 RNA polymerase sigma factor sigF | 1.2e-251 | 88.33 | Show/hide |
Query: VSVFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKHQAVEWPGLLSSWPSLQMGEYKISSVVKQ
V +F EQA+PARYFSTSFLSQEQHHECRPQSQ+LK+D+TSQMTLDRRLIERSV DE SRS HDHL+WELKHQAVEWP LLSSWPSLQM EYKISS K+
Subjt: VSVFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKHQAVEWPGLLSSWPSLQMGEYKISSVVKQ
Query: SNNTEREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSFSVDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSE
S N E+LV+DEPENVIALAKKALSASKQ A LVDESELVGT LD S DSLSKE RTV+ST+LQ+RRSKKR+VPKHVTTIHET N RGKD+RRKTSE
Subjt: SNNTEREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSFSVDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSE
Query: NVDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQ
DPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLM+LDNVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRMVVHIAKQY
Subjt: NVDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQ
Query: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLD
GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNY VRAGN KPSKEELAAHVGITVERLD
Subjt: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLD
Query: KLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLESRAL
KL+FMSRIPRSLQQPVWADQDTT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDG+EKTLLEIGNMFGLSKERVRQLE+RAL
Subjt: KLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLESRAL
Query: YKLKRCCNSQGLAA
YKLKRCCNSQGL A
Subjt: YKLKRCCNSQGLAA
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| A0A6J1CRW8 RNA polymerase sigma factor sigF, chloroplastic | 4.5e-259 | 90.35 | Show/hide |
Query: VSVFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKHQAVEWPGLLSSWPSLQMGEYKISSVVKQ
V + H+QATPARYFSTSF+ QEQHHECRPQSQ+LK+DKTSQMTLDRRLIERSVS DE SR GHDHLVWELKHQA EWPGLLSSWPSLQMGEYKISSV KQ
Subjt: VSVFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKHQAVEWPGLLSSWPSLQMGEYKISSVVKQ
Query: SNNT-EREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLD---SSFSVDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRR
NNT RE+LVEDEPE+VIALAKKALSASKQ ASLV+ESELVGT++D SS S DSL KE VKST+LQDRRSK+RRVPKHVTTIHETYN RGKDTRR
Subjt: SNNT-EREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLD---SSFSVDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRR
Query: KTSENVDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIA
KT+EN DPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLM+L+NVKARLQSQFGREPTLVEWAEA+G+TCQ LQSQLH FRVSREKLINANLRMVVHIA
Subjt: KTSENVDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIA
Query: KQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITV
K+YQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKN+FVR GN KPSKEELAAHVGITV
Subjt: KQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITV
Query: ERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLE
ERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLR+GIEDG+EKTLLEIGNMFGLSKERVRQLE
Subjt: ERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLE
Query: SRALYKLKRCCNSQGLAA
+RALYKLKRCCNSQGL A
Subjt: SRALYKLKRCCNSQGLAA
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| SwissProt top hits | e value | %identity | Alignment |
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| O22056 RNA polymerase sigma factor sigB | 3.9e-66 | 36.06 | Show/hide |
Query: IALAKKALSASKQVASLVDESELVGTDLDSSFSVDSLSKE---QRTVKSTKLQDRRSKKRRVPKHVTTIHETYNRGKDTRRK--TSENVDPNDPLRLFLW
+A++ + + K AS ++ + + + V+ L ++ V+ST+ +R++++ + + + + G ++K ++ VD NDPLR
Subjt: IALAKKALSASKQVASLVDESELVGTDLDSSFSVDSLSKE---QRTVKSTKLQDRRSKKRRVPKHVTTIHETYNRGKDTRRK--TSENVDPNDPLRLFLW
Query: GPETKKLLTVQEESELIVQIQDLMVLDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQEG
+ KLLTV+EE EL IQDL+ L+ ++ L + GR+PT +WA A G+ + L+ ++H + ++K+I +N+R+V+ IAK YQG G++L DL+QEG
Subjt: GPETKKLLTVQEESELIVQIQDLMVLDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQEG
Query: SLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQ
GL++ EKF G +F+TYA+WWI+Q++RK++ + SR IRLP ++ +V EA+ P EE+A G++++RL +L + PRSL
Subjt: SLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQ
Query: QPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLESRALYKLK
Q + +Q+ E+ AD E T + + +E MR+ + +L L +E+++IR RFG+EDGR KTL EIG M G+S+ERVRQ+ES A KLK
Subjt: QPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLESRALYKLK
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| P26683 RNA polymerase sigma factor SigA | 3.1e-63 | 40.45 | Show/hide |
Query: KDTRRKTSENVD-PNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLR
K RR S+ D +RL+L +LL EE EL +I DL+ L+ V+ RL + R+P EWAEA+ L + +LH R +++K++ +NLR
Subjt: KDTRRKTSENVD-PNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLR
Query: MVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAA
+VV IAK+Y RGLS DL+QEGSLGL+++ EKF + G +F+TYA WWIRQ+I +AI + SRTIRLP ++Y + ++ + + KP++EE+A
Subjt: MVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAA
Query: HVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKE
+ +T+E+L + +++P SL+ P+ ++D+ + +S+ +TP+ V + L+R + +L LSP+ER ++RLR+G++DGR KTL EIG +F +++E
Subjt: HVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKE
Query: RVRQLESRALYKLK
R+RQ+E++AL KL+
Subjt: RVRQLESRALYKLK
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| P38023 RNA polymerase sigma factor SigA1 | 3.4e-62 | 41.33 | Show/hide |
Query: DPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLS
D +RL+L +LL EE EL QI DL+ L+ ++ L Q R P+ EWA A+ + +L R +++K++ +NLR+VV IAK+Y RGLS
Subjt: DPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLS
Query: LHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFM
DL+QEGSLGL+++ EKF + G +F+TYA WWIRQ+I +AI + SRTIRLP ++Y + ++ + + KP++EE+A + +T+E+L +
Subjt: LHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFM
Query: SRIPRSLQQPVWADQDTTFQE-ITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLESRALYKLK
+++P SL+ P+ ++D+ + I AD E TP+ V + L+R + +LS LSP+ER ++RLR+G++DGR KTL EIG +F +++ER+RQ+E++AL KL+
Subjt: SRIPRSLQQPVWADQDTTFQE-ITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLESRALYKLK
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| P52322 RNA polymerase sigma factor SigA | 1.2e-54 | 34.89 | Show/hide |
Query: NRGKDTRRKTS--------ENVDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARL----QSQFGRE-----------------------
N GK TRR S + D +R++L +LL +EE EL +I DL+ L+ ++ +++G++
Subjt: NRGKDTRRKTS--------ENVDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARL----QSQFGRE-----------------------
Query: ------------PTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIR
P L EW + +L+ R ++EK++ +NLR+VV IAK+Y RGLS DL+QEGSLGL+++ EKF + G +F+TYA WWIR
Subjt: ------------PTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIR
Query: QSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQE-ITADSEVDTPDVSV
Q+I +AI + SRTIRLP ++Y + ++ + + KP++EE+A + +T+E+L + +++P SL+ P+ ++D+ + I AD E TP+ V
Subjt: QSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQE-ITADSEVDTPDVSV
Query: ERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLESRALYKLK
+ L+R + N+L LSP+ER ++RLR+G++DGR KTL EIG +F +++ER+RQ+E++AL KL+
Subjt: ERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLESRALYKLK
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| Q9LD95 RNA polymerase sigma factor sigF, chloroplastic | 1.9e-145 | 53.7 | Show/hide |
Query: MEAGLNLLSSSSPFISRCHPRSFLHPSCSSSSSSSSSSVSVFHEQATP-----------ARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIER
MEA NL+SSS F ++ H + SS SS SSV + H+Q T +R+F S LSQE E RP S L++D+TSQ+TL+RR +
Subjt: MEAGLNLLSSSSPFISRCHPRSFLHPSCSSSSSSSSSSVSVFHEQATP-----------ARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIER
Query: SVSFDEESRSGHDHLVWELKHQAVEWPGLLSSWPSLQMGEYKISSVVKQSNNTEREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTD-----LD
VS E+ + +L H W L+S S E K+ +VV L + E +V+ALA+KALSASKQ A LVD++E +D L
Subjt: SVSFDEESRSGHDHLVWELKHQAVEWPGLLSSWPSLQMGEYKISSVVKQSNNTEREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTD-----LD
Query: SSFSVDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYNRGK-DTRRKTSENVDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARL
+S S+ SL ++ V+S + +RR+K RR PK E Y K ++K + D +D L+LFLWGPETK+LLT +EE+ELI IQ L+ L+ VK +L
Subjt: SSFSVDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYNRGK-DTRRKTSENVDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARL
Query: QSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRK
+SQ G EPT+ EWAEA+G++ L+S +H R SREKLI ANLR+VVHIAKQYQ RGL+ DLLQEGS+GLMKSVEKFKPQ+GCRFATYAYWWIRQSIRK
Subjt: QSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRK
Query: AIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMR
+IF++SRTIRLPENVY LLGKV+EA+ V+ GN +PSKEELA HVG++ E+LDKLL+ +R P S+QQP+W+DQDTTFQEIT DS ++TP +SV ++LMR
Subjt: AIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMR
Query: RHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLAA
H+RNLL++LSPKERRII+LRFGI+ G++++L EIG ++GLSKERVRQLESRALY+LK+ NS GL A
Subjt: RHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLAA
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT1G08540.1 RNApolymerase sigma subunit 2 | 2.7e-67 | 36.06 | Show/hide |
Query: IALAKKALSASKQVASLVDESELVGTDLDSSFSVDSLSKE---QRTVKSTKLQDRRSKKRRVPKHVTTIHETYNRGKDTRRK--TSENVDPNDPLRLFLW
+A++ + + K AS ++ + + + V+ L ++ V+ST+ +R++++ + + + + G ++K ++ VD NDPLR
Subjt: IALAKKALSASKQVASLVDESELVGTDLDSSFSVDSLSKE---QRTVKSTKLQDRRSKKRRVPKHVTTIHETYNRGKDTRRK--TSENVDPNDPLRLFLW
Query: GPETKKLLTVQEESELIVQIQDLMVLDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQEG
+ KLLTV+EE EL IQDL+ L+ ++ L + GR+PT +WA A G+ + L+ ++H + ++K+I +N+R+V+ IAK YQG G++L DL+QEG
Subjt: GPETKKLLTVQEESELIVQIQDLMVLDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQEG
Query: SLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQ
GL++ EKF G +F+TYA+WWI+Q++RK++ + SR IRLP ++ +V EA+ P EE+A G++++RL +L + PRSL
Subjt: SLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQ
Query: QPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLESRALYKLK
Q + +Q+ E+ AD E T + + +E MR+ + +L L +E+++IR RFG+EDGR KTL EIG M G+S+ERVRQ+ES A KLK
Subjt: QPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLESRALYKLK
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| AT1G64860.1 sigma factor A | 6.8e-34 | 30.28 | Show/hide |
Query: TRRKTSENVDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVV
T K +V +R ++ G ++ +L+ E L +I+ + LD+ K+RL+ + G EP+ + A +L ++ LQ+ L ++REKL +N+R+V+
Subjt: TRRKTSENVDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVV
Query: HIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVG
IA++Y G + DL+Q G +GL++ +EKF G R +TY YWWIRQ + +A+ ++SRT+RLP +++ LG + AK G + PS + +A +
Subjt: HIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVG
Query: ITVERLDKLLFMSRIPRSLQQPVWADQD----TTFQEITADSEVD-TPDVSVERELMRRHIRNLLS-ILSPKERRIIRLRFGIEDGREKTLLEIGNMFGL
++ +++ SL + + + T AD+ ++ P + ++ + L+S L +E+ IIRL +G+ D T +I GL
Subjt: ITVERLDKLLFMSRIPRSLQQPVWADQD----TTFQEITADSEVD-TPDVSVERELMRRHIRNLLS-ILSPKERRIIRLRFGIEDGREKTLLEIGNMFGL
Query: SKERVRQLESRALYKLKRCCNSQGLAA
S+ERVRQ+ AL KLK + + A
Subjt: SKERVRQLESRALYKLKRCCNSQGLAA
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| AT2G36990.1 RNApolymerase sigma-subunit F | 1.3e-146 | 53.7 | Show/hide |
Query: MEAGLNLLSSSSPFISRCHPRSFLHPSCSSSSSSSSSSVSVFHEQATP-----------ARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIER
MEA NL+SSS F ++ H + SS SS SSV + H+Q T +R+F S LSQE E RP S L++D+TSQ+TL+RR +
Subjt: MEAGLNLLSSSSPFISRCHPRSFLHPSCSSSSSSSSSSVSVFHEQATP-----------ARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIER
Query: SVSFDEESRSGHDHLVWELKHQAVEWPGLLSSWPSLQMGEYKISSVVKQSNNTEREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTD-----LD
VS E+ + +L H W L+S S E K+ +VV L + E +V+ALA+KALSASKQ A LVD++E +D L
Subjt: SVSFDEESRSGHDHLVWELKHQAVEWPGLLSSWPSLQMGEYKISSVVKQSNNTEREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTD-----LD
Query: SSFSVDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYNRGK-DTRRKTSENVDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARL
+S S+ SL ++ V+S + +RR+K RR PK E Y K ++K + D +D L+LFLWGPETK+LLT +EE+ELI IQ L+ L+ VK +L
Subjt: SSFSVDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYNRGK-DTRRKTSENVDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARL
Query: QSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRK
+SQ G EPT+ EWAEA+G++ L+S +H R SREKLI ANLR+VVHIAKQYQ RGL+ DLLQEGS+GLMKSVEKFKPQ+GCRFATYAYWWIRQSIRK
Subjt: QSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRK
Query: AIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMR
+IF++SRTIRLPENVY LLGKV+EA+ V+ GN +PSKEELA HVG++ E+LDKLL+ +R P S+QQP+W+DQDTTFQEIT DS ++TP +SV ++LMR
Subjt: AIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMR
Query: RHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLAA
H+RNLL++LSPKERRII+LRFGI+ G++++L EIG ++GLSKERVRQLESRALY+LK+ NS GL A
Subjt: RHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLAA
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| AT3G53920.1 RNApolymerase sigma-subunit C | 5.1e-37 | 25.53 | Show/hide |
Query: VVKQSNNTEREVLVEDEPENVIALAKKALS---ASKQVASLVDESELVGTDLDSSFSVDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN----R
V S ER+++++ L K LS S + L D +ELV T + V S K ++ + + + + +P + T + R
Subjt: VVKQSNNTEREVLVEDEPENVIALAKKALS---ASKQVASLVDESELVGTDLDSSFSVDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN----R
Query: GKDTRRKTSENVDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLR
RK E + N E+E+ ++ + ++ ++ +L+ + G+ +L WA A G+ + L LH R++L+ +
Subjt: GKDTRRKTSENVDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMVLDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLR
Query: MVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLK-PSKEELA
+V+ +A+ Y+G G++ DL+Q G +G+++ E+F G +F+TY +WIR+S+ + H+R + +P ++ + + +A+ + +K + EE+A
Subjt: MVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLK-PSKEELA
Query: AHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSK
G +V+++ ++ S+ + V T F E T D+ +++P+ +V R+ RR I +LL L P+E++++ LR+G++D R K+L EIG + +SK
Subjt: AHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSK
Query: ERVRQLESRALYKLKRCCNSQGL
E +R++E RA+ KL+ N++ L
Subjt: ERVRQLESRALYKLKRCCNSQGL
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| AT5G13730.1 sigma factor 4 | 2.0e-41 | 32.38 | Show/hide |
Query: KQVASLVDESELVGTDLDSSFSVDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYNRGKDTRRKTSENVDPNDPLRLFLWGPETKKLLTVQEESEL
K +LV V +DSS + E+ ++S K + RR ++RRV E N G + +T + + + G L+ EE +L
Subjt: KQVASLVDESELVGTDLDSSFSVDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYNRGKDTRRKTSENVDPNDPLRLFLWGPETKKLLTVQEESEL
Query: IVQIQDLMVLDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAG
+ +++ L+N+ ++ E V A G + L + +REK+ R+VV IA YQG+GL+L DL+QEGS+GL++ E+F P G
Subjt: IVQIQDLMVLDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAG
Query: CRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITA
+ +TY YWWI+Q+I +AI SR ++LP +++ L KV EA N R +PS EE+A H+ + V + + SR P SL + + T QEI
Subjt: CRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITA
Query: DSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGL
+ P+ V+RE M+ I LL L+ +E R++ L FG+ + EIG LS+ERVRQ+ AL KL+ N L
Subjt: DSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGL
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