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Lag0012660 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012660
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionzinc finger (C2H2 type) family protein
Genome locationchr1:43049778..43050799
RNA-Seq ExpressionLag0012660
SyntenyLag0012660
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR003604 - Matrin/U1-C-like, C2H2-type zinc finger
IPR013087 - Zinc finger C2H2-type
IPR022755 - Zinc finger, double-stranded RNA binding
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063802.1 zinc finger protein 593 [Cucumis melo var. makuwa]9.7e-4294.32Show/hide
Query:  MVYDELKTPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM
        MVY+EL  P+VERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLM+GPAPHTQLDAELAAGMGMPDNGPKLMAM
Subjt:  MVYDELKTPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM

XP_008462489.1 PREDICTED: zinc finger protein 593 [Cucumis melo]9.7e-4294.32Show/hide
Query:  MVYDELKTPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM
        MVY+EL  P+VERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLM+GPAPHTQLDAELAAGMGMPDNGPKLMAM
Subjt:  MVYDELKTPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM

XP_022143723.1 zinc finger protein 593 [Momordica charantia]3.0e-4396.59Show/hide
Query:  MVYDELKTPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM
        MVYDELK PDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKR+KLMTGPAPHTQLDAELAAGMGMPDNGPKLM+M
Subjt:  MVYDELKTPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM

XP_022962632.1 zinc finger protein 593 [Cucurbita moschata]9.7e-4294.32Show/hide
Query:  MVYDELKTPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM
        MVYD LK P+VERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLM GPAPHTQLDA+LAAGMGMPDNGPKLMAM
Subjt:  MVYDELKTPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM

XP_022972762.1 zinc finger protein 593 [Cucurbita maxima]9.7e-4294.32Show/hide
Query:  MVYDELKTPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM
        MVYD LK P+VERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLM GPAPHTQLDA+LAAGMGMPDNGPKLMAM
Subjt:  MVYDELKTPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM

TrEMBL top hitse value%identityAlignment
A0A1S3CH13 zinc finger protein 5934.7e-4294.32Show/hide
Query:  MVYDELKTPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM
        MVY+EL  P+VERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLM+GPAPHTQLDAELAAGMGMPDNGPKLMAM
Subjt:  MVYDELKTPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM

A0A5A7V6B3 Zinc finger protein 5934.7e-4294.32Show/hide
Query:  MVYDELKTPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM
        MVY+EL  P+VERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLM+GPAPHTQLDAELAAGMGMPDNGPKLMAM
Subjt:  MVYDELKTPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM

A0A6J1CRE9 zinc finger protein 5931.5e-4396.59Show/hide
Query:  MVYDELKTPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM
        MVYDELK PDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKR+KLMTGPAPHTQLDAELAAGMGMPDNGPKLM+M
Subjt:  MVYDELKTPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM

A0A6J1HD68 zinc finger protein 5934.7e-4294.32Show/hide
Query:  MVYDELKTPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM
        MVYD LK P+VERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLM GPAPHTQLDA+LAAGMGMPDNGPKLMAM
Subjt:  MVYDELKTPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM

A0A6J1I5Q7 zinc finger protein 5934.7e-4294.32Show/hide
Query:  MVYDELKTPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM
        MVYD LK P+VERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLM GPAPHTQLDA+LAAGMGMPDNGPKLMAM
Subjt:  MVYDELKTPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM

SwissProt top hitse value%identityAlignment
B0BLT0 Zinc finger protein 5938.4e-1253.33Show/hide
Query:  VDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMG
        +D  LPG  Q+YCLHC RYF ++    EHFKTK H++R+K +    P+TQ +AE AAGMG
Subjt:  VDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMG

Q08004 Bud site selection protein 202.3e-0937.5Show/hide
Query:  MVYDELKTPDVERPSL--PVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGM
        ++Y++L T +  +  L  P+DE  PG+GQ+YC+HC +Y         H K K H++RVK + G  P+TQ  ++ AAG  +
Subjt:  MVYDELKTPDVERPSL--PVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGM

Q9P370 Zinc finger protein bud203.0e-0945.31Show/hide
Query:  LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMP
        LP+D DLPG+GQ+YC+ C RYF +      H K K H++R+K +    P+TQ +AE A  +G P
Subjt:  LPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMP

Q9U239 Zinc finger protein 593 homolog1.7e-0946.67Show/hide
Query:  VDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMG
        +D DLPG GQ+YC+ C+R+F +   R  H KTK H+ RVK +    P+TQ +A  A G G
Subjt:  VDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMG

Q9W3Y0 Zinc finger protein 593 homolog6.6e-0940.54Show/hide
Query:  DELKTPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMG
        D+L+T   E  +  VD D PG  Q+YC+HC +YF + +    HF+TK H++R+K +    P++  +AE AAG G
Subjt:  DELKTPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMG

Arabidopsis top hitse value%identityAlignment
AT2G36930.1 zinc finger (C2H2 type) family protein2.5e-3572.41Show/hide
Query:  MVYDELKTPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMA
        +VY EL+ P+ E   L +DEDLPGMGQ+YCLHCDRYF+NVSVRD+HFKTK+H+KRV +M G APH+QLDA+LA GMGMPDNGPKLM+
Subjt:  MVYDELKTPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCTACGATGAGTTGAAGACACCCGACGTGGAGAGGCCTTCTCTGCCTGTTGACGAAGACTTGCCTGGAATGGGGCAGTACTACTGCTTGCACTGCGACCGATACTT
TGCTAATGTATCTGTGAGGGACGAGCATTTCAAGACCAAGCGTCACAGGAAGCGGGTAAAACTAATGACGGGTCCTGCACCGCACACACAACTGGACGCCGAGTTAGCTG
CTGGGATGGGCATGCCTGATAATGGTCCAAAGCTTATGGCAATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCTACGATGAGTTGAAGACACCCGACGTGGAGAGGCCTTCTCTGCCTGTTGACGAAGACTTGCCTGGAATGGGGCAGTACTACTGCTTGCACTGCGACCGATACTT
TGCTAATGTATCTGTGAGGGACGAGCATTTCAAGACCAAGCGTCACAGGAAGCGGGTAAAACTAATGACGGGTCCTGCACCGCACACACAACTGGACGCCGAGTTAGCTG
CTGGGATGGGCATGCCTGATAATGGTCCAAAGCTTATGGCAATGTGA
Protein sequenceShow/hide protein sequence
MVYDELKTPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM