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Lag0012708 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012708
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTyrosine decarboxylase
Genome locationchr1:43586789..43588094
RNA-Seq ExpressionLag0012708
SyntenyLag0012708
Gene Ontology termsGO:0006520 - cellular amino acid metabolic process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0016831 - carboxy-lyase activity (molecular function)
GO:0030170 - pyridoxal phosphate binding (molecular function)
InterPro domainsIPR010977 - Aromatic-L-amino-acid decarboxylase
IPR015424 - Pyridoxal phosphate-dependent transferase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585288.1 F-box protein, partial [Cucurbita argyrosperma subsp. sororia]5.9e-2570.21Show/hide
Query:  FYHFVVKSFFNLISPILVQSESQNSPAQILHQFARIHRLEIEFPTGNPKVDRVGGVKWRVEFEI---SCVILIFRGIR-DLDDRATMAEDFNFI
        F+  VVKSFF+LISPILVQSESQNSPAQIL QF RI RLEIEFPTG+ KV+R+GGVKWR EF I   SCVIL+FRGIR +  D   +A+ F+FI
Subjt:  FYHFVVKSFFNLISPILVQSESQNSPAQILHQFARIHRLEIEFPTGNPKVDRVGGVKWRVEFEI---SCVILIFRGIR-DLDDRATMAEDFNFI

XP_022951596.1 F-box protein At1g22220-like [Cucurbita moschata]5.9e-2570.21Show/hide
Query:  FYHFVVKSFFNLISPILVQSESQNSPAQILHQFARIHRLEIEFPTGNPKVDRVGGVKWRVEFEI---SCVILIFRGIR-DLDDRATMAEDFNFI
        F+  VVKSFF+LISPILVQSESQNSPAQIL QF RI RLEIEFPTG+ KV+R+GGVKWR EF I   SCVIL+FRGIR +  D   +A+ F+FI
Subjt:  FYHFVVKSFFNLISPILVQSESQNSPAQILHQFARIHRLEIEFPTGNPKVDRVGGVKWRVEFEI---SCVILIFRGIR-DLDDRATMAEDFNFI

XP_023002829.1 F-box protein At1g78100-like [Cucurbita maxima]5.9e-2570.21Show/hide
Query:  FYHFVVKSFFNLISPILVQSESQNSPAQILHQFARIHRLEIEFPTGNPKVDRVGGVKWRVEFEI---SCVILIFRGIR-DLDDRATMAEDFNFI
        F+  VVKSFF+LISPILVQSESQNSPAQIL QF RI RLEIEFPTG+ KV+R+GGVKWR EF I   SCVIL+FRGIR +  D   +A+ F+FI
Subjt:  FYHFVVKSFFNLISPILVQSESQNSPAQILHQFARIHRLEIEFPTGNPKVDRVGGVKWRVEFEI---SCVILIFRGIR-DLDDRATMAEDFNFI

XP_023537288.1 F-box protein At1g22220-like [Cucurbita pepo subsp. pepo]5.9e-2570.21Show/hide
Query:  FYHFVVKSFFNLISPILVQSESQNSPAQILHQFARIHRLEIEFPTGNPKVDRVGGVKWRVEFEI---SCVILIFRGIR-DLDDRATMAEDFNFI
        F+  VVKSFF+LISPILVQSESQNSPAQIL QF RI RLEIEFPTG+ KV+R+GGVKWR EF I   SCVIL+FRGIR +  D   +A+ F+FI
Subjt:  FYHFVVKSFFNLISPILVQSESQNSPAQILHQFARIHRLEIEFPTGNPKVDRVGGVKWRVEFEI---SCVILIFRGIR-DLDDRATMAEDFNFI

XP_038894117.1 tyrosine decarboxylase-like [Benincasa hispida]3.0e-2474.39Show/hide
Query:  MGSIKYDDNEADDNNIHVINPLDPEEFRTQAHKVIDFIAYYYKNIEQFPVLSQVLPGYLRKAIPEESAPIAPETLESILQDL
        MGSI   +NE DD + HV+NPLDPEEFR+QAHKV+DFIA YYKNIEQFPV+SQV P YLRK IP++SAP APE+LESILQD+
Subjt:  MGSIKYDDNEADDNNIHVINPLDPEEFRTQAHKVIDFIAYYYKNIEQFPVLSQVLPGYLRKAIPEESAPIAPETLESILQDL

TrEMBL top hitse value%identityAlignment
A0A6J1GI01 F-box protein At1g22220-like2.9e-2570.21Show/hide
Query:  FYHFVVKSFFNLISPILVQSESQNSPAQILHQFARIHRLEIEFPTGNPKVDRVGGVKWRVEFEI---SCVILIFRGIR-DLDDRATMAEDFNFI
        F+  VVKSFF+LISPILVQSESQNSPAQIL QF RI RLEIEFPTG+ KV+R+GGVKWR EF I   SCVIL+FRGIR +  D   +A+ F+FI
Subjt:  FYHFVVKSFFNLISPILVQSESQNSPAQILHQFARIHRLEIEFPTGNPKVDRVGGVKWRVEFEI---SCVILIFRGIR-DLDDRATMAEDFNFI

A0A6J1GSQ7 tyrosine decarboxylase 1-like2.7e-2371.95Show/hide
Query:  MGSIKYDDNEADDNNIHVINPLDPEEFRTQAHKVIDFIAYYYKNIEQFPVLSQVLPGYLRKAIPEESAPIAPETLESILQDL
        MGSI++      +N+IHVI+P+DPEEFR+QAHKV+DFIA YYKNIEQ+PVLSQV PGYLRK IPEESAP  PE LE ILQD+
Subjt:  MGSIKYDDNEADDNNIHVINPLDPEEFRTQAHKVIDFIAYYYKNIEQFPVLSQVLPGYLRKAIPEESAPIAPETLESILQDL

A0A6J1K2B8 tyrosine decarboxylase 1-like2.1e-2371.95Show/hide
Query:  MGSIKYDDNEADDNNIHVINPLDPEEFRTQAHKVIDFIAYYYKNIEQFPVLSQVLPGYLRKAIPEESAPIAPETLESILQDL
        MGSI++      +N+ HVI+P+DPEEFRTQAHKV+DFIA YYKNIEQ+PVLSQV PGYLRK IPEESAP  PE+LE ILQD+
Subjt:  MGSIKYDDNEADDNNIHVINPLDPEEFRTQAHKVIDFIAYYYKNIEQFPVLSQVLPGYLRKAIPEESAPIAPETLESILQDL

A0A6J1KL51 tyrosine/DOPA decarboxylase 1-like7.1e-2471.95Show/hide
Query:  MGSIKYDDNEADDNNIHVINPLDPEEFRTQAHKVIDFIAYYYKNIEQFPVLSQVLPGYLRKAIPEESAPIAPETLESILQDL
        MGSI Y++N    NNIH+ NPLDPEEFR QA+KV+DFIA YYKNIEQFPVLSQV PGYLRK +P++SAP  PE LESIL+D+
Subjt:  MGSIKYDDNEADDNNIHVINPLDPEEFRTQAHKVIDFIAYYYKNIEQFPVLSQVLPGYLRKAIPEESAPIAPETLESILQDL

A0A6J1KRK0 F-box protein At1g78100-like2.9e-2570.21Show/hide
Query:  FYHFVVKSFFNLISPILVQSESQNSPAQILHQFARIHRLEIEFPTGNPKVDRVGGVKWRVEFEI---SCVILIFRGIR-DLDDRATMAEDFNFI
        F+  VVKSFF+LISPILVQSESQNSPAQIL QF RI RLEIEFPTG+ KV+R+GGVKWR EF I   SCVIL+FRGIR +  D   +A+ F+FI
Subjt:  FYHFVVKSFFNLISPILVQSESQNSPAQILHQFARIHRLEIEFPTGNPKVDRVGGVKWRVEFEI---SCVILIFRGIR-DLDDRATMAEDFNFI

SwissProt top hitse value%identityAlignment
O82415 Tyrosine decarboxylase1.8e-1653.66Show/hide
Query:  MGSIKYDDNEADDNNIHVINPLDPEEFRTQAHKVIDFIAYYYKNIEQFPVLSQVLPGYLRKAIPEESAPIAPETLESILQDL
        MGS+    N  +  ++   NPLDP+EFR Q H +IDF+A YYKN+E++PV SQV PGYL+K +P ESAP  PE++E+IL+D+
Subjt:  MGSIKYDDNEADDNNIHVINPLDPEEFRTQAHKVIDFIAYYYKNIEQFPVLSQVLPGYLRKAIPEESAPIAPETLESILQDL

P17770 Aromatic-L-amino-acid decarboxylase2.4e-1652.44Show/hide
Query:  MGSIKYDDNEADDNNIHVINPLDPEEFRTQAHKVIDFIAYYYKNIEQFPVLSQVLPGYLRKAIPEESAPIAPETLESILQDL
        MGSI   +    ++ +    PL+ EEFR QAH+++DFIA YYKN+E +PVLS+V PGYLRK IP E+AP  PE L+ I++D+
Subjt:  MGSIKYDDNEADDNNIHVINPLDPEEFRTQAHKVIDFIAYYYKNIEQFPVLSQVLPGYLRKAIPEESAPIAPETLESILQDL

P54769 Tyrosine/DOPA decarboxylase 23.3e-1854.88Show/hide
Query:  MGSIKYDDNEADDNNIHVINPLDPEEFRTQAHKVIDFIAYYYKNIEQFPVLSQVLPGYLRKAIPEESAPIAPETLESILQDL
        MGS+  +D   + +   V NPLDPEEFR Q H +IDF+A YY+++E++PV SQV PGYLRK +P E+AP  PE++E+ILQD+
Subjt:  MGSIKYDDNEADDNNIHVINPLDPEEFRTQAHKVIDFIAYYYKNIEQFPVLSQVLPGYLRKAIPEESAPIAPETLESILQDL

P54770 Tyrosine/DOPA decarboxylase 31.6e-1753.66Show/hide
Query:  MGSIKYDDNEADDNNIHVINPLDPEEFRTQAHKVIDFIAYYYKNIEQFPVLSQVLPGYLRKAIPEESAPIAPETLESILQDL
        MGS+  +D     +     NPLDPEEFR Q H +IDF+A YY+++E++PV SQV PGYLRK +P E+AP  PE++E+ILQD+
Subjt:  MGSIKYDDNEADDNNIHVINPLDPEEFRTQAHKVIDFIAYYYKNIEQFPVLSQVLPGYLRKAIPEESAPIAPETLESILQDL

P93083 Tryptophan decarboxylase TDC26.2e-1757.32Show/hide
Query:  MGSIKYDDNEADDNNIHVINPLDPEEFRTQAHKVIDFIAYYYKNIEQFPVLSQVLPGYLRKAIPEESAPIAPETLESILQDL
        MGSI   D+  D  +     PL+PEEFR QAH+++DFIA YYKNIE +PVLSQV PGYL+  +P E+AP  PE  ESIL+D+
Subjt:  MGSIKYDDNEADDNNIHVINPLDPEEFRTQAHKVIDFIAYYYKNIEQFPVLSQVLPGYLRKAIPEESAPIAPETLESILQDL

Arabidopsis top hitse value%identityAlignment
AT2G20340.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein1.0e-1456.92Show/hide
Query:  VINPLDPEEFRTQAHKVIDFIAYYYKNIEQFPVLSQVLPGYLRKAIPEESAPIAPETLESILQDL
        V+ P+D E+ R   H ++DFIA YYK IE FPVLSQV PGYL K +P +SAP  PETL+ +L D+
Subjt:  VINPLDPEEFRTQAHKVIDFIAYYYKNIEQFPVLSQVLPGYLRKAIPEESAPIAPETLESILQDL

AT4G28680.1 L-tyrosine decarboxylase1.4e-1145.57Show/hide
Query:  DNEADDNNIHVINPLDPEEFRTQAHKVIDFIAYYYKNI----EQFPVLSQVLPGYLRKAIPEESAPIAPETLESILQDL
        + +A+   +  + P+D E  R Q H ++DFIA YYKN+    + FPVLSQV PGYLR  +P +SAP  PE+L+ +L D+
Subjt:  DNEADDNNIHVINPLDPEEFRTQAHKVIDFIAYYYKNI----EQFPVLSQVLPGYLRKAIPEESAPIAPETLESILQDL

AT4G28680.2 L-tyrosine decarboxylase1.4e-1145.57Show/hide
Query:  DNEADDNNIHVINPLDPEEFRTQAHKVIDFIAYYYKNI----EQFPVLSQVLPGYLRKAIPEESAPIAPETLESILQDL
        + +A+   +  + P+D E  R Q H ++DFIA YYKN+    + FPVLSQV PGYLR  +P +SAP  PE+L+ +L D+
Subjt:  DNEADDNNIHVINPLDPEEFRTQAHKVIDFIAYYYKNI----EQFPVLSQVLPGYLRKAIPEESAPIAPETLESILQDL

AT4G28680.3 L-tyrosine decarboxylase1.4e-1145.57Show/hide
Query:  DNEADDNNIHVINPLDPEEFRTQAHKVIDFIAYYYKNI----EQFPVLSQVLPGYLRKAIPEESAPIAPETLESILQDL
        + +A+   +  + P+D E  R Q H ++DFIA YYKN+    + FPVLSQV PGYLR  +P +SAP  PE+L+ +L D+
Subjt:  DNEADDNNIHVINPLDPEEFRTQAHKVIDFIAYYYKNI----EQFPVLSQVLPGYLRKAIPEESAPIAPETLESILQDL

AT4G28680.4 L-tyrosine decarboxylase1.4e-1145.57Show/hide
Query:  DNEADDNNIHVINPLDPEEFRTQAHKVIDFIAYYYKNI----EQFPVLSQVLPGYLRKAIPEESAPIAPETLESILQDL
        + +A+   +  + P+D E  R Q H ++DFIA YYKN+    + FPVLSQV PGYLR  +P +SAP  PE+L+ +L D+
Subjt:  DNEADDNNIHVINPLDPEEFRTQAHKVIDFIAYYYKNI----EQFPVLSQVLPGYLRKAIPEESAPIAPETLESILQDL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAGCATCAAATACGATGATAATGAAGCCGACGACAACAATATTCATGTCATCAACCCTCTAGATCCAGAAGAATTCAGAACCCAAGCACACAAAGTTATCGACTT
CATTGCATATTATTACAAAAACATCGAACAATTCCCAGTTCTTAGTCAAGTTCTTCCTGGTTATCTACGAAAAGCAATTCCTGAAGAATCCGCTCCAATTGCTCCCGAAA
CTTTGGAATCCATTCTTCAAGATCTTCCATTTCTTCTCTACTTTTCCGGTCATCTCCATCGGTGTTCTTCTCCATCTCTTGTCTTCTTCATTCTTCCGTCTTCTCCATAT
TTCTCCACTTGTTCGCAGAGGCCAGGAGAAAACGTTTCATCTCCATTTCTATCAGCGTTTCATTTCCCTCACGATTTCAGCTTCTATTTCAACCTTCATCTTGATTTCTA
TCATTTCGTCGTCAAGTCGTTCTTCAATTTGATTTCCCCTATTCTCGTACAATCCGAGTCGCAGAACTCTCCGGCGCAAATCCTCCACCAGTTCGCCCGGATCCATCGCC
TCGAGATCGAGTTTCCGACGGGCAATCCCAAGGTCGACAGAGTCGGGGGCGTTAAATGGAGAGTGGAGTTTGAGATTAGCTGCGTGATATTGATTTTTCGAGGGATTAGG
GATTTGGATGATCGGGCAACGATGGCGGAGGATTTCAATTTCATCGGAGGGATGCAATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTAGCATCAAATACGATGATAATGAAGCCGACGACAACAATATTCATGTCATCAACCCTCTAGATCCAGAAGAATTCAGAACCCAAGCACACAAAGTTATCGACTT
CATTGCATATTATTACAAAAACATCGAACAATTCCCAGTTCTTAGTCAAGTTCTTCCTGGTTATCTACGAAAAGCAATTCCTGAAGAATCCGCTCCAATTGCTCCCGAAA
CTTTGGAATCCATTCTTCAAGATCTTCCATTTCTTCTCTACTTTTCCGGTCATCTCCATCGGTGTTCTTCTCCATCTCTTGTCTTCTTCATTCTTCCGTCTTCTCCATAT
TTCTCCACTTGTTCGCAGAGGCCAGGAGAAAACGTTTCATCTCCATTTCTATCAGCGTTTCATTTCCCTCACGATTTCAGCTTCTATTTCAACCTTCATCTTGATTTCTA
TCATTTCGTCGTCAAGTCGTTCTTCAATTTGATTTCCCCTATTCTCGTACAATCCGAGTCGCAGAACTCTCCGGCGCAAATCCTCCACCAGTTCGCCCGGATCCATCGCC
TCGAGATCGAGTTTCCGACGGGCAATCCCAAGGTCGACAGAGTCGGGGGCGTTAAATGGAGAGTGGAGTTTGAGATTAGCTGCGTGATATTGATTTTTCGAGGGATTAGG
GATTTGGATGATCGGGCAACGATGGCGGAGGATTTCAATTTCATCGGAGGGATGCAATTTTGA
Protein sequenceShow/hide protein sequence
MGSIKYDDNEADDNNIHVINPLDPEEFRTQAHKVIDFIAYYYKNIEQFPVLSQVLPGYLRKAIPEESAPIAPETLESILQDLPFLLYFSGHLHRCSSPSLVFFILPSSPY
FSTCSQRPGENVSSPFLSAFHFPHDFSFYFNLHLDFYHFVVKSFFNLISPILVQSESQNSPAQILHQFARIHRLEIEFPTGNPKVDRVGGVKWRVEFEISCVILIFRGIR
DLDDRATMAEDFNFIGGMQF