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Lag0012710 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012710
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptiontranscription factor RAX2
Genome locationchr1:43601949..43602314
RNA-Seq ExpressionLag0012710
SyntenyLag0012710
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596486.1 Transcription factor MYB36, partial [Cucurbita argyrosperma subsp. sororia]5.1e-0953.4Show/hide
Query:  LSSAAAFSTNLLNNPTTTLISTTNNNNNNATPFHQLLSQDQSFIISSMGADQNNNNYRVKAEHSQPLVFGGDQASCSSSDAEYGVGVVGVGVE-EKRRMS
        L    +FS+ LLN   T LIST NN            SQDQ+FI++    +Q  NNY VK+ H   LVFG DQASCSSSDAEYG G  G+GVE EK+RMS
Subjt:  LSSAAAFSTNLLNNPTTTLISTTNNNNNNATPFHQLLSQDQSFIISSMGADQNNNNYRVKAEHSQPLVFGGDQASCSSSDAEYGVGVVGVGVE-EKRRMS

Query:  FVE
        FV+
Subjt:  FVE

XP_004137976.1 transcription factor RAX2 [Cucumis sativus]1.5e-1353.28Show/hide
Query:  MIKALSSAAAFSTNLLNNPTTTLISTTNNNNNNATPF--HQLLSQD-QSFIISSMGADQNNNNYRVK-AEHSQPLVFGGDQASCSSSDAEYGVGVVGVGV
        +I  L    +FS+NLL NPTTT        NNNATP   HQ +SQD QSF++S+M   +  NNY VK  +    LVFGGDQ SCSSSDAEYG    G+GV
Subjt:  MIKALSSAAAFSTNLLNNPTTTLISTTNNNNNNATPF--HQLLSQD-QSFIISSMGADQNNNNYRVK-AEHSQPLVFGGDQASCSSSDAEYGVGVVGVGV

Query:  EEKRR------MSFVECSSSVD
        EEKRR      MSFVE S  V+
Subjt:  EEKRR------MSFVECSSSVD

XP_016899626.1 PREDICTED: transcription factor RAX2 [Cucumis melo]7.9e-1857.85Show/hide
Query:  MIKALSSAAAFSTNLLNNPTTTLISTTNNN-NNNATPF--HQLLSQDQSFIISSMGADQNNNNYRVKAEHSQPLVFGGDQASCSSSDAEYGVGVVGVGVE
        +I  L    +FS+NLL NPTTT  +TTNNN NNNATP   HQ +SQDQSF++S+M   +  NNY VK    + LVFGGDQ SCSSSDAEYG    G+GVE
Subjt:  MIKALSSAAAFSTNLLNNPTTTLISTTNNN-NNNATPF--HQLLSQDQSFIISSMGADQNNNNYRVKAEHSQPLVFGGDQASCSSSDAEYGVGVVGVGVE

Query:  EKRR------MSFVECSSSVD
        EKRR      MSFVE S  V+
Subjt:  EKRR------MSFVECSSSVD

XP_022927921.1 transcription factor RAX2 [Cucurbita moschata]5.1e-0953.4Show/hide
Query:  LSSAAAFSTNLLNNPTTTLISTTNNNNNNATPFHQLLSQDQSFIISSMGADQNNNNYRVKAEHSQPLVFGGDQASCSSSDAEYGVGVVGVGVE-EKRRMS
        L    +FS+ LLN   T LIST NN            SQDQ+FI++    +Q  NNY VK+ H   LVFG DQASCSSSDAEYG G  G+GVE EK+RMS
Subjt:  LSSAAAFSTNLLNNPTTTLISTTNNNNNNATPFHQLLSQDQSFIISSMGADQNNNNYRVKAEHSQPLVFGGDQASCSSSDAEYGVGVVGVGVE-EKRRMS

Query:  FVE
        FV+
Subjt:  FVE

XP_038905335.1 transcription factor RAX2 [Benincasa hispida]2.2e-1553.72Show/hide
Query:  MIKALSSAAAFSTNLLNNPTTTLISTTNNNNNNATP-FHQLLSQDQSFIISSM-GADQNNNNYRVKAEHSQPLVFGGDQASCSSSDAEYGVGVVGVGVEE
        +I       +FS+NLL NPTT       NNNN+ATP FH  LSQDQSF++S M GA+  N+N+ VK +  + LVFGGDQ S SSSD EYG    G GVEE
Subjt:  MIKALSSAAAFSTNLLNNPTTTLISTTNNNNNNATP-FHQLLSQDQSFIISSM-GADQNNNNYRVKAEHSQPLVFGGDQASCSSSDAEYGVGVVGVGVEE

Query:  KRR-------MSFVECSSSVD
        KRR       MSFVECS  V+
Subjt:  KRR-------MSFVECSSSVD

TrEMBL top hitse value%identityAlignment
A0A0A0LE28 Uncharacterized protein7.5e-1453.28Show/hide
Query:  MIKALSSAAAFSTNLLNNPTTTLISTTNNNNNNATPF--HQLLSQD-QSFIISSMGADQNNNNYRVK-AEHSQPLVFGGDQASCSSSDAEYGVGVVGVGV
        +I  L    +FS+NLL NPTTT        NNNATP   HQ +SQD QSF++S+M   +  NNY VK  +    LVFGGDQ SCSSSDAEYG    G+GV
Subjt:  MIKALSSAAAFSTNLLNNPTTTLISTTNNNNNNATPF--HQLLSQD-QSFIISSMGADQNNNNYRVK-AEHSQPLVFGGDQASCSSSDAEYGVGVVGVGV

Query:  EEKRR------MSFVECSSSVD
        EEKRR      MSFVE S  V+
Subjt:  EEKRR------MSFVECSSSVD

A0A1S4DUG6 transcription factor RAX23.8e-1857.85Show/hide
Query:  MIKALSSAAAFSTNLLNNPTTTLISTTNNN-NNNATPF--HQLLSQDQSFIISSMGADQNNNNYRVKAEHSQPLVFGGDQASCSSSDAEYGVGVVGVGVE
        +I  L    +FS+NLL NPTTT  +TTNNN NNNATP   HQ +SQDQSF++S+M   +  NNY VK    + LVFGGDQ SCSSSDAEYG    G+GVE
Subjt:  MIKALSSAAAFSTNLLNNPTTTLISTTNNN-NNNATPF--HQLLSQDQSFIISSMGADQNNNNYRVKAEHSQPLVFGGDQASCSSSDAEYGVGVVGVGVE

Query:  EKRR------MSFVECSSSVD
        EKRR      MSFVE S  V+
Subjt:  EKRR------MSFVECSSSVD

A0A5D3DPE9 Transcription factor RAX22.6e-0661.67Show/hide
Query:  NNYRVKAEHSQPLVFGGDQASCSSSDAEYGVGVVGVGVEEKRR------MSFVECSSSVD
        NNY VK    + LVFGGDQ SCSSSDAEYG    G+GVEEKRR      MSFVE S  V+
Subjt:  NNYRVKAEHSQPLVFGGDQASCSSSDAEYGVGVVGVGVEEKRR------MSFVECSSSVD

A0A6J1EIV2 transcription factor RAX22.5e-0953.4Show/hide
Query:  LSSAAAFSTNLLNNPTTTLISTTNNNNNNATPFHQLLSQDQSFIISSMGADQNNNNYRVKAEHSQPLVFGGDQASCSSSDAEYGVGVVGVGVE-EKRRMS
        L    +FS+ LLN   T LIST NN            SQDQ+FI++    +Q  NNY VK+ H   LVFG DQASCSSSDAEYG G  G+GVE EK+RMS
Subjt:  LSSAAAFSTNLLNNPTTTLISTTNNNNNNATPFHQLLSQDQSFIISSMGADQNNNNYRVKAEHSQPLVFGGDQASCSSSDAEYGVGVVGVGVE-EKRRMS

Query:  FVE
        FV+
Subjt:  FVE

A0A6J1L3K4 transcription factor RAX21.6e-0850.52Show/hide
Query:  AFSTNLLNNPTTTLISTTNNNNNNATPFHQLLSQDQSFIISSMGADQNNNNYRVKAEHSQPLVFGGDQASCSSSDAEYGVGVVGVGVEEKRRMSFVE
        +FS +LLN   T LIST NN            SQDQ+FI++    ++  NNY  K++H   LVFG DQASCSSSDAEYG   +GV  +EK+RMSFV+
Subjt:  AFSTNLLNNPTTTLISTTNNNNNNATPFHQLLSQDQSFIISSMGADQNNNNYRVKAEHSQPLVFGGDQASCSSSDAEYGVGVVGVGVEEKRRMSFVE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCAAAGCTTTATCATCAGCTGCTGCATTCTCAACCAATCTTCTAAACAACCCCACAACAACTTTAATCTCCACAACCAATAACAACAACAATAATGCCACTCCATT
TCACCAACTACTCTCTCAAGATCAAAGCTTTATCATCAGCTCAATGGGAGCTGATCAAAATAATAATAATTATCGTGTCAAAGCTGAGCATAGCCAGCCCCTTGTGTTTG
GAGGGGATCAGGCCAGTTGCAGCTCCTCCGACGCCGAGTACGGAGTCGGGGTCGTCGGAGTCGGAGTCGAGGAGAAGAGGAGAATGAGCTTTGTAGAGTGCTCTAGTAGT
GTTGATAATGGGGATGGAATAATGAGAAGCAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGATCAAAGCTTTATCATCAGCTGCTGCATTCTCAACCAATCTTCTAAACAACCCCACAACAACTTTAATCTCCACAACCAATAACAACAACAATAATGCCACTCCATT
TCACCAACTACTCTCTCAAGATCAAAGCTTTATCATCAGCTCAATGGGAGCTGATCAAAATAATAATAATTATCGTGTCAAAGCTGAGCATAGCCAGCCCCTTGTGTTTG
GAGGGGATCAGGCCAGTTGCAGCTCCTCCGACGCCGAGTACGGAGTCGGGGTCGTCGGAGTCGGAGTCGAGGAGAAGAGGAGAATGAGCTTTGTAGAGTGCTCTAGTAGT
GTTGATAATGGGGATGGAATAATGAGAAGCAATTAG
Protein sequenceShow/hide protein sequence
MIKALSSAAAFSTNLLNNPTTTLISTTNNNNNNATPFHQLLSQDQSFIISSMGADQNNNNYRVKAEHSQPLVFGGDQASCSSSDAEYGVGVVGVGVEEKRRMSFVECSSS
VDNGDGIMRSN