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Lag0012714 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012714
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchr1:43635854..43637054
RNA-Seq ExpressionLag0012714
SyntenyLag0012714
Gene Ontology termsGO:0009793 - embryo development ending in seed dormancy (biological process)
GO:0005515 - protein binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604378.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]3.6e-1486Show/hide
Query:  LRLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELFFAMLGS
        LRLGLVRDA+KVFSGL CPNVVSY+A+ISGFSKSNREDE++ELFFAML S
Subjt:  LRLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELFFAMLGS

KAG7034530.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]3.6e-1486Show/hide
Query:  LRLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELFFAMLGS
        LRLGLVRDA+KVFSGL CPNVVSY+A+ISGFSKSNREDE++ELFFAML S
Subjt:  LRLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELFFAMLGS

XP_022143798.1 pentatricopeptide repeat-containing protein At5g03800 isoform X1 [Momordica charantia]2.1e-1486Show/hide
Query:  LRLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELFFAMLGS
        LRLGLVRDA++VFSGL CPNVVSYTALISGFSKSNRED+++ELFFAML S
Subjt:  LRLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELFFAMLGS

XP_022925540.1 pentatricopeptide repeat-containing protein At5g03800 [Cucurbita moschata]3.6e-1486Show/hide
Query:  LRLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELFFAMLGS
        LRLGLVRDA+KVFSGL CPNVVSY+A+ISGFSKSNREDE++ELFFAML S
Subjt:  LRLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELFFAMLGS

XP_023543217.1 pentatricopeptide repeat-containing protein At5g03800 [Cucurbita pepo subsp. pepo]3.6e-1486Show/hide
Query:  LRLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELFFAMLGS
        LRLGLVRDA+KVFSGL CPNVVSY+A+ISGFSKSNREDE++ELFFAML S
Subjt:  LRLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELFFAMLGS

TrEMBL top hitse value%identityAlignment
A0A1S3CIQ0 pentatricopeptide repeat-containing protein At5g038002.8e-0476.32Show/hide
Query:  DTSFVLQEVEERRKKEFLFYQSAKLSAT----STKPGK
        DTSFVLQEVEER+KKEFLFY S KL+AT     TKPGK
Subjt:  DTSFVLQEVEERRKKEFLFYQSAKLSAT----STKPGK

A0A1S3CIQ0 pentatricopeptide repeat-containing protein At5g038005.0e-1484Show/hide
Query:  LRLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELFFAMLGS
        LRLGLV+DA+KVFSGL CPNVVSY+A+ISGFSKSNREDE++ELFFAML S
Subjt:  LRLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELFFAMLGS

A0A5A7SLG5 Pentatricopeptide repeat-containing protein3.0e-1477.05Show/hide
Query:  FIQNFFISLLSLRLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELFFAMLGS
        F+ N  IS   L+LGLVRDA+KVFSGL CPNVVSYTALISGFSKSN EDE++ELFFAML S
Subjt:  FIQNFFISLLSLRLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELFFAMLGS

A0A5A7SLG5 Pentatricopeptide repeat-containing protein2.8e-0476.32Show/hide
Query:  DTSFVLQEVEERRKKEFLFYQSAKLSAT----STKPGK
        DTSFVLQEVEER+KKEFLFY S KL+AT     TKPGK
Subjt:  DTSFVLQEVEERRKKEFLFYQSAKLSAT----STKPGK

A0A5A7SLG5 Pentatricopeptide repeat-containing protein3.0e-1477.05Show/hide
Query:  FIQNFFISLLSLRLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELFFAMLGS
        F+ N  IS   L+LGLVRDA+KVFSGL CPNVVSYTALISGFSKSN EDE++ELFFAML S
Subjt:  FIQNFFISLLSLRLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELFFAMLGS

A0A6J1CRL9 pentatricopeptide repeat-containing protein At5g03800 isoform X11.0e-1486Show/hide
Query:  LRLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELFFAMLGS
        LRLGLVRDA++VFSGL CPNVVSYTALISGFSKSNRED+++ELFFAML S
Subjt:  LRLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELFFAMLGS

A0A6J1EIA3 pentatricopeptide repeat-containing protein At5g038001.7e-1486Show/hide
Query:  LRLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELFFAMLGS
        LRLGLVRDA+KVFSGL CPNVVSY+A+ISGFSKSNREDE++ELFFAML S
Subjt:  LRLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELFFAMLGS

SwissProt top hitse value%identityAlignment
O23266 Pentatricopeptide repeat-containing protein At4g14050, mitochondrial2.0e-0444.19Show/hide
Query:  RLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELF
        + GL+  A+ VF  +   N +S+TA++SG++KS R++E+LELF
Subjt:  RLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELF

Q9FFN1 Pentatricopeptide repeat-containing protein At5g038002.2e-0659.57Show/hide
Query:  LRLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELFFAM
        L+LG  R+A  VF  L  P VVSYTALISGFS+ N E E+L++FF M
Subjt:  LRLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELFFAM

Arabidopsis top hitse value%identityAlignment
AT2G27610.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.6e-0432.1Show/hide
Query:  FGFVPDSGCCANAIATFIQ--NFFISLLSLRLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELFFAMLGSDT
        FGF+ D     + + T+++  NF            +D  KVF  +   NVV++T LISG+++++  DE L LF  M    T
Subjt:  FGFVPDSGCCANAIATFIQ--NFFISLLSLRLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELFFAMLGSDT

AT3G53360.1 Tetratricopeptide repeat (TPR)-like superfamily protein9.4e-0534.92Show/hide
Query:  TFIQNFFISLLSLRLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELFFAMLGSD
        T + N  +S+   + G +RDA +VF  +   N+VSYT++I+G+S++ +  E++ L+  ML  D
Subjt:  TFIQNFFISLLSLRLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELFFAMLGSD

AT4G08210.1 Pentatricopeptide repeat (PPR-like) superfamily protein4.7e-0432.95Show/hide
Query:  FIQNFFISLLSLRLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELFFAMLGSDTSFVLQEVEERRKKEFLFYQSAKLSA
        FI N  IS+  +   L+ DA KVF  +   N+V++T ++SG++   + ++++EL+  ML S         EE    EF++  SA L A
Subjt:  FIQNFFISLLSLRLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELFFAMLGSDTSFVLQEVEERRKKEFLFYQSAKLSA

AT4G14050.1 Pentatricopeptide repeat (PPR) superfamily protein1.5e-0544.19Show/hide
Query:  RLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELF
        + GL+  A+ VF  +   N +S+TA++SG++KS R++E+LELF
Subjt:  RLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELF

AT5G03800.1 Pentatricopeptide repeat (PPR) superfamily protein1.5e-0759.57Show/hide
Query:  LRLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELFFAM
        L+LG  R+A  VF  L  P VVSYTALISGFS+ N E E+L++FF M
Subjt:  LRLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELFFAM

AT5G03800.1 Pentatricopeptide repeat (PPR) superfamily protein1.5e-0260.71Show/hide
Query:  DTSFVLQEVEERRKKEFLFYQSAKLSAT
        +T +VLQEV+E  KK FLF+ SAKL+ T
Subjt:  DTSFVLQEVEERRKKEFLFYQSAKLSAT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTAAAGTTGGCGCCTTTGGATTTGTTCCCGACTCTGGCTGCTGTGCAAACGCCATCGCCACTTTTATCCAAAACTTCTTCATCTCTCTCTTAAGTCTCAGGTTGGG
GCTTGTTCGAGATGCTGAAAAAGTCTTTTCTGGGCTTTTGTGTCCTAATGTGGTGTCTTATACGGCGTTGATTTCTGGGTTTTCCAAGTCGAACCGGGAAGATGAATCTC
TTGAGCTTTTCTTTGCGATGTTGGGCTCAGACACTAGTTTTGTTCTTCAAGAAGTAGAGGAACGCCGAAAGAAGGAATTCTTGTTCTATCAAAGTGCAAAATTATCTGCA
ACTTCGACTAAACCAGGGAAAGCCCATCCAAATCGTGAAGAATGTCCGTTTGTGTGGAGATTGCCATACCTTCTTGAAACATGTTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTAAAGTTGGCGCCTTTGGATTTGTTCCCGACTCTGGCTGCTGTGCAAACGCCATCGCCACTTTTATCCAAAACTTCTTCATCTCTCTCTTAAGTCTCAGGTTGGG
GCTTGTTCGAGATGCTGAAAAAGTCTTTTCTGGGCTTTTGTGTCCTAATGTGGTGTCTTATACGGCGTTGATTTCTGGGTTTTCCAAGTCGAACCGGGAAGATGAATCTC
TTGAGCTTTTCTTTGCGATGTTGGGCTCAGACACTAGTTTTGTTCTTCAAGAAGTAGAGGAACGCCGAAAGAAGGAATTCTTGTTCTATCAAAGTGCAAAATTATCTGCA
ACTTCGACTAAACCAGGGAAAGCCCATCCAAATCGTGAAGAATGTCCGTTTGTGTGGAGATTGCCATACCTTCTTGAAACATGTTTCTGA
Protein sequenceShow/hide protein sequence
MVKVGAFGFVPDSGCCANAIATFIQNFFISLLSLRLGLVRDAEKVFSGLLCPNVVSYTALISGFSKSNREDESLELFFAMLGSDTSFVLQEVEERRKKEFLFYQSAKLSA
TSTKPGKAHPNREECPFVWRLPYLLETCF