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Lag0012738 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012738
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr1:43891458..43891871
RNA-Seq ExpressionLag0012738
SyntenyLag0012738
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021716820.1 uncharacterized protein LOC110684687 [Chenopodium quinoa]2.8e-1131.16Show/hide
Query:  MGGGFILRNDRGEVLLLTCVILPKCWNVDLAEGLSMLRGIQLARQMGFFSFHVETDLQRLCRILNEDVTDVLEVGAIADEIRVMLRQDTSCRVLFTPRQG
        +G G ++R+  GEV++ TC+ L   + VD+AE L++   +++A +  F    +ETD  ++   L +       +G + ++I  + R   SC   F  R G
Subjt:  MGGGFILRNDRGEVLLLTCVILPKCWNVDLAEGLSMLRGIQLARQMGFFSFHVETDLQRLCRILNEDVTDVLEVGAIADEIRVMLRQDTSCRVLFTPRQG

Query:  NLAAHTMASLAFLYVDF-TWLEEWPIEASDVICREFSS
        N AAH +A L+  Y D   W+EE P E S  +  + +S
Subjt:  NLAAHTMASLAFLYVDF-TWLEEWPIEASDVICREFSS

XP_021768618.1 uncharacterized protein LOC110732940 [Chenopodium quinoa]1.1e-1230.66Show/hide
Query:  MGGGFILRNDRGEVLLLTCVILPKCWNVDLAEGLSMLRGIQLARQMGFFSFHVETDLQRLCRILNEDVTDVLEVGAIADEIRVMLRQDTSCRVLFTPRQG
        +G G ++ +  G+V++  C+ +   + VD+ E ++M   +Q+  + GF S  +ETD  +L   L++        G I ++I ++ R   +C   F  R G
Subjt:  MGGGFILRNDRGEVLLLTCVILPKCWNVDLAEGLSMLRGIQLARQMGFFSFHVETDLQRLCRILNEDVTDVLEVGAIADEIRVMLRQDTSCRVLFTPRQG

Query:  NLAAHTMASLAFLYVDFT-WLEEWPIEASDVICREFS
        N  AH++A L   Y DFT WLEE+P + S+++  + S
Subjt:  NLAAHTMASLAFLYVDFT-WLEEWPIEASDVICREFS

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]6.6e-1334.92Show/hide
Query:  GGGFILRNDRGEVLLLTCVILPKCWNVDLAEGLSMLRGIQLARQMGFFSFHVETDLQRLCRILNEDVTDVLEVGAIADEIRVMLRQDTSCRVLFTPRQGN
        G G I+RNDRG+V+      L    +VD+AE +  + G+QLA ++G     +ETD  R+  + ++   D+ E G I  + +    Q       F  R+GN
Subjt:  GGGFILRNDRGEVLLLTCVILPKCWNVDLAEGLSMLRGIQLARQMGFFSFHVETDLQRLCRILNEDVTDVLEVGAIADEIRVMLRQDTSCRVLFTPRQGN

Query:  LAAHTMASLAFLYVDFT-WLEEWPIE
         AAH +A  A L  +F+ W+E+WP+E
Subjt:  LAAHTMASLAFLYVDFT-WLEEWPIE

XP_042958143.1 uncharacterized protein LOC122293710 [Carya illinoinensis]9.6e-1231.85Show/hide
Query:  MGGGFILRNDRGEVLLLTCVILPKCWNVDLAEGLSMLRGIQLARQMGFFSFHVETDLQRLCRILNEDVTDVLEVGAIADEIRVMLRQDTSCRVLFTPRQG
        +G G +LR++ GEVL   C   P   +  LAE +++ + ++L+ ++GF    +E D Q +   +N    D+   G I ++++ +LR+  S ++ FT R+G
Subjt:  MGGGFILRNDRGEVLLLTCVILPKCWNVDLAEGLSMLRGIQLARQMGFFSFHVETDLQRLCRILNEDVTDVLEVGAIADEIRVMLRQDTSCRVLFTPRQG

Query:  NLAAHTMASLAFLY-VDFTWLEEWPIEASDVICRE
        N  AH +A  A L   D  W++E P   S  +C+E
Subjt:  NLAAHTMASLAFLY-VDFTWLEEWPIEASDVICRE

XP_042972980.1 uncharacterized protein LOC122304781 [Carya illinoinensis]1.9e-1232.59Show/hide
Query:  MGGGFILRNDRGEVLLLTCVILPKCWNVDLAEGLSMLRGIQLARQMGFFSFHVETDLQRLCRILNEDVTDVLEVGAIADEIRVMLRQDTSCRVLFTPRQG
        +G G +LR++ GEVL   C   P   N  LAE +++ + ++L+ ++GF    +E D Q +   +N    D+   G I ++++ +LR+  S ++ FT R+G
Subjt:  MGGGFILRNDRGEVLLLTCVILPKCWNVDLAEGLSMLRGIQLARQMGFFSFHVETDLQRLCRILNEDVTDVLEVGAIADEIRVMLRQDTSCRVLFTPRQG

Query:  NLAAHTMASLAFLY-VDFTWLEEWPIEASDVICRE
        N  AH +A  A L   D  W++E P   S  +C+E
Subjt:  NLAAHTMASLAFLY-VDFTWLEEWPIEASDVICRE

TrEMBL top hitse value%identityAlignment
A0A1S8ABJ9 Ribonuclease H-like superfamily protein (Fragment)2.8e-0931.75Show/hide
Query:  GGGFILRNDRGEVLLLTCVILPKCWNVDLAEGLSMLRGIQLARQMGFFSFHVETDLQRLCRILNEDVTDVLEVGAIADEIRVMLRQDTSCRVLFTPRQGN
        G G I+RN +G V+       P   +V++AE L++L G++LA ++      +E+D + +   + + ++   EV  I  EIRV++ Q+   R  +TP   N
Subjt:  GGGFILRNDRGEVLLLTCVILPKCWNVDLAEGLSMLRGIQLARQMGFFSFHVETDLQRLCRILNEDVTDVLEVGAIADEIRVMLRQDTSCRVLFTPRQGN

Query:  LAAHTMASLAFL-YVDFTWLEEWPIE
        L AH +A +A        W++E PIE
Subjt:  LAAHTMASLAFL-YVDFTWLEEWPIE

A0A2I4FPH6 uncharacterized protein LOC1090009443.3e-1031.11Show/hide
Query:  MGGGFILRNDRGEVLLLTCVILPKCWNVDLAEGLSMLRGIQLARQMGFFSFHVETDLQRLCRILNEDVTDVLEVGAIADEIRVMLRQDTSCRVLFTPRQG
        MG G ++R++ GE L   C       +   AE +++ + ++++R +GF     E D Q + R +NED TD    G+I  + + ML+Q    +V +  R  
Subjt:  MGGGFILRNDRGEVLLLTCVILPKCWNVDLAEGLSMLRGIQLARQMGFFSFHVETDLQRLCRILNEDVTDVLEVGAIADEIRVMLRQDTSCRVLFTPRQG

Query:  NLAAHTMASLAF-LYVDFTWLEEWPIEASDVICRE
        N  AH +A  A  L  +F W++  P   SD I  E
Subjt:  NLAAHTMASLAF-LYVDFTWLEEWPIEASDVICRE

A0A6J1CIF1 uncharacterized protein LOC1110112373.2e-1334.92Show/hide
Query:  GGGFILRNDRGEVLLLTCVILPKCWNVDLAEGLSMLRGIQLARQMGFFSFHVETDLQRLCRILNEDVTDVLEVGAIADEIRVMLRQDTSCRVLFTPRQGN
        G G I+RNDRG+V+      L    +VD+AE +  + G+QLA ++G     +ETD  R+  + ++   D+ E G I  + +    Q       F  R+GN
Subjt:  GGGFILRNDRGEVLLLTCVILPKCWNVDLAEGLSMLRGIQLARQMGFFSFHVETDLQRLCRILNEDVTDVLEVGAIADEIRVMLRQDTSCRVLFTPRQGN

Query:  LAAHTMASLAFLYVDFT-WLEEWPIE
         AAH +A  A L  +F+ W+E+WP+E
Subjt:  LAAHTMASLAFLYVDFT-WLEEWPIE

A0A6P9DWZ3 uncharacterized protein LOC1183440357.4e-1029.63Show/hide
Query:  MGGGFILRNDRGEVLLLTCVILPKCWNVDLAEGLSMLRGIQLARQMGFFSFHVETDLQRLCRILNEDVTDVLEVGAIADEIRVMLRQDTSCRVLFTPRQG
        +G G ++ +  GEVL+  C I+       +AE L++ R   L  ++GF +  +E D   + ++ +       + G I +++R+++R + + RV F  R+ 
Subjt:  MGGGFILRNDRGEVLLLTCVILPKCWNVDLAEGLSMLRGIQLARQMGFFSFHVETDLQRLCRILNEDVTDVLEVGAIADEIRVMLRQDTSCRVLFTPRQG

Query:  NLAAHTMASLAFLYVD-FTWLEEWPIEASDVICRE
        N+ AH ++ L F Y D   W+EE PIE    I +E
Subjt:  NLAAHTMASLAFLYVD-FTWLEEWPIEASDVICRE

A0A803LHG6 Uncharacterized protein7.4e-1028.26Show/hide
Query:  MGGGFILRNDRGEVLLLTCVILPKCWNVDLAEGLSMLRGIQLARQMGFFSFHVETDLQRLCRILNEDVTDVLEVGAIADEIRVMLRQDTSCRVLFTPRQG
        +G G ++R++ G+V+  TC+ +   ++VD+ E ++M   +++A + GF    +ETD  +L   L +   D    G +  +I  +     SC   F  R+G
Subjt:  MGGGFILRNDRGEVLLLTCVILPKCWNVDLAEGLSMLRGIQLARQMGFFSFHVETDLQRLCRILNEDVTDVLEVGAIADEIRVMLRQDTSCRVLFTPRQG

Query:  NLAAHTMASLAFLYVDF-TWLEEWPIEASDVICREFSS
        N  AH++A L+  +     WLEE+P    +++  + SS
Subjt:  NLAAHTMASLAFLYVDF-TWLEEWPIEASDVICREFSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGGTGGCTTTATCCTGCGAAATGACAGAGGAGAAGTCCTTTTATTAACTTGTGTTATTCTGCCTAAATGCTGGAATGTTGATTTGGCCGAGGGACTGTCCATGCT
GAGAGGTATACAACTTGCGCGTCAAATGGGGTTCTTCAGCTTTCATGTGGAAACCGATTTGCAGAGACTATGCAGGATTCTGAATGAAGATGTAACCGATGTTTTGGAAG
TAGGCGCTATTGCGGATGAGATTCGTGTTATGCTCCGGCAAGACACTTCATGCAGGGTGTTGTTTACGCCCAGACAAGGAAACTTGGCAGCTCATACCATGGCTTCTTTA
GCTTTTCTTTATGTTGATTTTACCTGGCTTGAGGAATGGCCTATTGAGGCTTCTGATGTAATTTGTCGTGAATTTTCTTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGGTGGCTTTATCCTGCGAAATGACAGAGGAGAAGTCCTTTTATTAACTTGTGTTATTCTGCCTAAATGCTGGAATGTTGATTTGGCCGAGGGACTGTCCATGCT
GAGAGGTATACAACTTGCGCGTCAAATGGGGTTCTTCAGCTTTCATGTGGAAACCGATTTGCAGAGACTATGCAGGATTCTGAATGAAGATGTAACCGATGTTTTGGAAG
TAGGCGCTATTGCGGATGAGATTCGTGTTATGCTCCGGCAAGACACTTCATGCAGGGTGTTGTTTACGCCCAGACAAGGAAACTTGGCAGCTCATACCATGGCTTCTTTA
GCTTTTCTTTATGTTGATTTTACCTGGCTTGAGGAATGGCCTATTGAGGCTTCTGATGTAATTTGTCGTGAATTTTCTTCTTAA
Protein sequenceShow/hide protein sequence
MGGGFILRNDRGEVLLLTCVILPKCWNVDLAEGLSMLRGIQLARQMGFFSFHVETDLQRLCRILNEDVTDVLEVGAIADEIRVMLRQDTSCRVLFTPRQGNLAAHTMASL
AFLYVDFTWLEEWPIEASDVICREFSS