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Lag0012766 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012766
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionProtein FAR1-RELATED SEQUENCE 4
Genome locationchr1:44174995..44176301
RNA-Seq ExpressionLag0012766
SyntenyLag0012766
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0032196 - transposition (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033326.1 MuDRA-like transposase [Cucumis melo var. makuwa]1.6e-2327.11Show/hide
Query:  LLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDNRDVTWVM-------------------
        L  V  +  GRW E++RY  ++  +V VP   + Q+   CI+ ++FP+ E  ++ LT+Y NG N +N+IRI D++ V+W+M                   
Subjt:  LLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDNRDVTWVM-------------------

Query:  -SNIGDG--MTSDICVVAD-----------------------------HCEV------------------------------------------------
         SNIG+   ++S++ +  D                             HC +                                                
Subjt:  -SNIGDG--MTSDICVVAD-----------------------------HCEV------------------------------------------------

Query:  ------------WRGRELALTTIRGSPEASYELIPVFFVALIEKNPGTYTAFDVDDEGKFRYFFMCLSATIHAWKYCFPVMSVE
                    WR RE+AL +I G+PE SY ++  F  A I  NPGTY A   DDEG+F+++FM L+A+I AW YC PV+ V+
Subjt:  ------------WRGRELALTTIRGSPEASYELIPVFFVALIEKNPGTYTAFDVDDEGKFRYFFMCLSATIHAWKYCFPVMSVE

KAA0042312.1 protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa]3.6e-2330.04Show/hide
Query:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDNRDVTWVMSNIGDGMTSDICVVAD-
        + L  V  +  GRW E+ RY  +    V V    + QEF  CI+ ++FP+ +  ++RLT+Y  G N   +I+I D++DV+W+M  +     +D+ +V D 
Subjt:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDNRDVTWVMSNIGDGMTSDICVVAD-

Query:  -----------------------------------------------HCEVWRGRELALTTIRGSPEASYELIPVFFVALIEKNPGTYTAFDVDDEGKFR
                                                       + + WRGRE AL +IR + E SY ++  F  ALI  N       + DD+G+F+
Subjt:  -----------------------------------------------HCEVWRGRELALTTIRGSPEASYELIPVFFVALIEKNPGTYTAFDVDDEGKFR

Query:  YFFMCLSATIHAWKYCFPVMSVE
        ++FM L+A+I AW YC PV+SV+
Subjt:  YFFMCLSATIHAWKYCFPVMSVE

KAA0066503.1 uncharacterized protein E6C27_scaffold25G00500 [Cucumis melo var. makuwa]3.0e-3038.86Show/hide
Query:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDNRDVTWVMSNIGDGMTSDICVVADH
        + L  V  +F GRW E+ RY  ++   V VP   + QEF  CI  ++FP+ E  ++RLT+Y    N   +IRI D++DV+W+M  I     +D+ +V D 
Subjt:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDNRDVTWVMSNIGDGMTSDICVVADH

Query:  CEVWRGRELALTTIRGSPEASYELIPVFFVALIEKNPGTYTAFDVDDEGKFRYFFMCLSATIHAWKYCFPVMSVE
                  +    G+ E SY ++  F  ALI  NPGTYTA + +DEG+F+++ M L+A+I AW YC PV+SV+
Subjt:  CEVWRGRELALTTIRGSPEASYELIPVFFVALIEKNPGTYTAFDVDDEGKFRYFFMCLSATIHAWKYCFPVMSVE

TYK21259.1 protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa]3.0e-2227.34Show/hide
Query:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDNRDVTWVMSNIGDGMTSDICVVAD-
        + L  V  +F GRW E+ RY  ++                  I+ ++FP+ E  ++RLT+Y    N +  IRI D+++V+W+M  +     +D+ +V D 
Subjt:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDNRDVTWVMSNIGDGMTSDICVVAD-

Query:  ---------------------------------------------------------------------------------HCEVWRGRELALTTIRGSP
                                                                                         + + WRG E+AL +IRG+P
Subjt:  ---------------------------------------------------------------------------------HCEVWRGRELALTTIRGSP

Query:  EASYELIPVFFVALIEKNPGTYTAFDVDDEGKFRYFFMCLSATIHAWKYCFPVMSV
        E SY ++  F  ALI  NPGTYTA + DDEG+F+++FM L+A+I AW YC PV+SV
Subjt:  EASYELIPVFFVALIEKNPGTYTAFDVDDEGKFRYFFMCLSATIHAWKYCFPVMSV

XP_038887125.1 uncharacterized protein LOC120077310 [Benincasa hispida]3.6e-2325.91Show/hide
Query:  LLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDNRDVTWVMSNIGDGMTSDICVVADH--
        L  V +LF+GRWDEN++Y+ F+     +P   + Q+F E I+ K+FPS E  I+RL MY  G + +N+I I +++ + W+M  + D    D+CVV DH  
Subjt:  LLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDNRDVTWVMSNIGDGMTSDICVVADH--

Query:  --------------------------------------------------------------------------------------------------CE
                                                                                                            
Subjt:  --------------------------------------------------------------------------------------------------CE

Query:  VWRG----------------------------RELALTTIRGSPEASYELIPVFFVALIEKNPGTYTAFDVDDEGKFRYFFMCLSATIHAWKYCFPVMSV
        V+RG                              +     +G+ E+SY  +P F  ALIE NPGTYT  + DDEG+F+Y+F+ L+A+I AWK+CFP+MSV
Subjt:  VWRG----------------------------RELALTTIRGSPEASYELIPVFFVALIEKNPGTYTAFDVDDEGKFRYFFMCLSATIHAWKYCFPVMSV

Query:  E
        +
Subjt:  E

TrEMBL top hitse value%identityAlignment
A0A5A7TFW2 Protein FAR-RED ELONGATED HYPOCOTYL 3-like1.7e-2330.04Show/hide
Query:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDNRDVTWVMSNIGDGMTSDICVVAD-
        + L  V  +  GRW E+ RY  +    V V    + QEF  CI+ ++FP+ +  ++RLT+Y  G N   +I+I D++DV+W+M  +     +D+ +V D 
Subjt:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDNRDVTWVMSNIGDGMTSDICVVAD-

Query:  -----------------------------------------------HCEVWRGRELALTTIRGSPEASYELIPVFFVALIEKNPGTYTAFDVDDEGKFR
                                                       + + WRGRE AL +IR + E SY ++  F  ALI  N       + DD+G+F+
Subjt:  -----------------------------------------------HCEVWRGRELALTTIRGSPEASYELIPVFFVALIEKNPGTYTAFDVDDEGKFR

Query:  YFFMCLSATIHAWKYCFPVMSVE
        ++FM L+A+I AW YC PV+SV+
Subjt:  YFFMCLSATIHAWKYCFPVMSVE

A0A5A7VEN5 Uncharacterized protein1.5e-3038.86Show/hide
Query:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDNRDVTWVMSNIGDGMTSDICVVADH
        + L  V  +F GRW E+ RY  ++   V VP   + QEF  CI  ++FP+ E  ++RLT+Y    N   +IRI D++DV+W+M  I     +D+ +V D 
Subjt:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDNRDVTWVMSNIGDGMTSDICVVADH

Query:  CEVWRGRELALTTIRGSPEASYELIPVFFVALIEKNPGTYTAFDVDDEGKFRYFFMCLSATIHAWKYCFPVMSVE
                  +    G+ E SY ++  F  ALI  NPGTYTA + +DEG+F+++ M L+A+I AW YC PV+SV+
Subjt:  CEVWRGRELALTTIRGSPEASYELIPVFFVALIEKNPGTYTAFDVDDEGKFRYFFMCLSATIHAWKYCFPVMSVE

A0A5D3DAG3 ZnF_PMZ domain-containing protein1.9e-2227.73Show/hide
Query:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDNRDVTWVMSNIGDGMTSDICVVAD-
        + L  V  +F GRW E++RY  +    V VP   + QEF  CI+ ++FP+ E  ++RLT+Y    N +N+I+I +++D +W+M  I     +D+ +V D 
Subjt:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDNRDVTWVMSNIGDGMTSDICVVAD-

Query:  ----------------------HCE------------------------------------VWRGRELALTTIR----------------------GSPE
                              H E                                    +       L T+R                      G+PE
Subjt:  ----------------------HCE------------------------------------VWRGRELALTTIR----------------------GSPE

Query:  ASYELIPVFFVALIEKNPGTYTAFDVDDEGKFRYFFMCLSATIHAWKYCFPVMSVE
          Y ++  F  ALI  NPGTYTA + DDEG+F+++FM L+A+I AW YC P++ V+
Subjt:  ASYELIPVFFVALIEKNPGTYTAFDVDDEGKFRYFFMCLSATIHAWKYCFPVMSVE

A0A5D3DDB9 Protein FAR1-RELATED SEQUENCE 41.5e-2227.34Show/hide
Query:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDNRDVTWVMSNIGDGMTSDICVVAD-
        + L  V  +F GRW E+ RY  ++                  I+ ++FP+ E  ++RLT+Y    N +  IRI D+++V+W+M  +     +D+ +V D 
Subjt:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDNRDVTWVMSNIGDGMTSDICVVAD-

Query:  ---------------------------------------------------------------------------------HCEVWRGRELALTTIRGSP
                                                                                         + + WRG E+AL +IRG+P
Subjt:  ---------------------------------------------------------------------------------HCEVWRGRELALTTIRGSP

Query:  EASYELIPVFFVALIEKNPGTYTAFDVDDEGKFRYFFMCLSATIHAWKYCFPVMSV
        E SY ++  F  ALI  NPGTYTA + DDEG+F+++FM L+A+I AW YC PV+SV
Subjt:  EASYELIPVFFVALIEKNPGTYTAFDVDDEGKFRYFFMCLSATIHAWKYCFPVMSV

A0A5D3DDR3 MuDRA-like transposase7.8e-2427.11Show/hide
Query:  LLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDNRDVTWVM-------------------
        L  V  +  GRW E++RY  ++  +V VP   + Q+   CI+ ++FP+ E  ++ LT+Y NG N +N+IRI D++ V+W+M                   
Subjt:  LLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDNRDVTWVM-------------------

Query:  -SNIGDG--MTSDICVVAD-----------------------------HCEV------------------------------------------------
         SNIG+   ++S++ +  D                             HC +                                                
Subjt:  -SNIGDG--MTSDICVVAD-----------------------------HCEV------------------------------------------------

Query:  ------------WRGRELALTTIRGSPEASYELIPVFFVALIEKNPGTYTAFDVDDEGKFRYFFMCLSATIHAWKYCFPVMSVE
                    WR RE+AL +I G+PE SY ++  F  A I  NPGTY A   DDEG+F+++FM L+A+I AW YC PV+ V+
Subjt:  ------------WRGRELALTTIRGSPEASYELIPVFFVALIEKNPGTYTAFDVDDEGKFRYFFMCLSATIHAWKYCFPVMSVE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGCCAGTTGGTTTGTTGAATGTGGTGGTTCTATTCAGTGGGAGGTGGGATGAAAACAATCGGTACAATGGGTTTAAGTCCGACAGTGTGCCAGTACCGGAGGGATG
CACAATACAAGAGTTTAATGAATGTATTCGAAGCAAGGTATTTCCATCGGACGAGCACATGATCACTCGGTTAACCATGTACAGGAATGGTATCAACAAGGCTAATATAA
TCCGGATCACTGACAACAGGGATGTTACTTGGGTCATGTCCAACATTGGCGATGGGATGACTAGTGACATATGCGTTGTGGCTGACCACTGTGAGGTATGGAGGGGGCGG
GAACTTGCACTTACTACCATCAGAGGGTCACCCGAAGCGTCGTATGAACTAATCCCTGTTTTCTTTGTTGCCCTGATTGAGAAAAACCCAGGTACATACACTGCTTTTGA
TGTTGACGATGAGGGCAAGTTCAGGTACTTTTTCATGTGTCTCTCTGCGACCATACATGCATGGAAATACTGTTTTCCTGTTATGTCGGTTGAAGAGGTAGATTTGGTTT
TCAGAGATACACTCCCACAACAATATGCTTGTAGGGGCATTTTCGTCGGTCCATAG
mRNA sequenceShow/hide mRNA sequence
ATGCCGCCAGTTGGTTTGTTGAATGTGGTGGTTCTATTCAGTGGGAGGTGGGATGAAAACAATCGGTACAATGGGTTTAAGTCCGACAGTGTGCCAGTACCGGAGGGATG
CACAATACAAGAGTTTAATGAATGTATTCGAAGCAAGGTATTTCCATCGGACGAGCACATGATCACTCGGTTAACCATGTACAGGAATGGTATCAACAAGGCTAATATAA
TCCGGATCACTGACAACAGGGATGTTACTTGGGTCATGTCCAACATTGGCGATGGGATGACTAGTGACATATGCGTTGTGGCTGACCACTGTGAGGTATGGAGGGGGCGG
GAACTTGCACTTACTACCATCAGAGGGTCACCCGAAGCGTCGTATGAACTAATCCCTGTTTTCTTTGTTGCCCTGATTGAGAAAAACCCAGGTACATACACTGCTTTTGA
TGTTGACGATGAGGGCAAGTTCAGGTACTTTTTCATGTGTCTCTCTGCGACCATACATGCATGGAAATACTGTTTTCCTGTTATGTCGGTTGAAGAGGTAGATTTGGTTT
TCAGAGATACACTCCCACAACAATATGCTTGTAGGGGCATTTTCGTCGGTCCATAG
Protein sequenceShow/hide protein sequence
MPPVGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDNRDVTWVMSNIGDGMTSDICVVADHCEVWRGR
ELALTTIRGSPEASYELIPVFFVALIEKNPGTYTAFDVDDEGKFRYFFMCLSATIHAWKYCFPVMSVEEVDLVFRDTLPQQYACRGIFVGP