CuGenDBv2

Gene ID	Lag0012775
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Small nuclear ribonucleoprotein G
Genome location	chr1:44219918..44220918
RNA-Seq Expression	Lag0012775
Synteny	Lag0012775
Gene Ontology terms	GO:0000387 - spliceosomal snRNP assembly (biological process) GO:0005682 - U5 snRNP (cellular component) GO:0005685 - U1 snRNP (cellular component) GO:0005686 - U2 snRNP (cellular component) GO:0005687 - U4 snRNP (cellular component) GO:0005689 - U12-type spliceosomal complex (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0034719 - SMN-Sm protein complex (cellular component) GO:0043186 - P granule (cellular component) GO:0071004 - U2-type prespliceosome (cellular component) GO:0071011 - precatalytic spliceosome (cellular component) GO:0071013 - catalytic step 2 spliceosome (cellular component) GO:0097526 - spliceosomal tri-snRNP complex (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR044641 - Sm-like protein Lsm7/SmG IPR034098 - Small nuclear ribonucleoprotein G IPR010920 - LSM domain superfamily IPR001163 - LSM domain, eukaryotic/archaea-type

Homology

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GenBank top hits

e value

%identity

Alignment

KAF7820147.1 putative small nuclear ribonucleoprotein G [Senna tora]

3.1e-34

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Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        MSRSGQPPDLKKYMDKKLQIKLNANR+++GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNSVVTVEALEPVNRTQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

XP_004143329.1 probable small nuclear ribonucleoprotein G [Cucumis sativus]

3.1e-34

97.5

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Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        MSRSGQPPDLKKYMDKKLQIKLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR Q
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

XP_011094310.1 probable small nuclear ribonucleoprotein G [Sesamum indicum]

3.1e-34

97.5

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Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        MSRSGQPPDLKKYMDKKLQIKLNANR+VVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR Q
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

XP_022132404.1 probable small nuclear ribonucleoprotein G [Momordica charantia]

6.1e-35

98.75

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Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        MSRSGQPPDLKKYMDKKLQIKLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

XP_028784792.1 probable small nuclear ribonucleoprotein G [Prosopis alba]

1.4e-34

96.25

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Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        MSRSGQPPDLKKYMDKKLQIKLNANR+++GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KHH9 Small nuclear ribonucleoprotein G

1.5e-34

97.5

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Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        MSRSGQPPDLKKYMDKKLQIKLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR Q
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

A0A2G9GPP4 Small nuclear ribonucleoprotein G

1.5e-34

97.5

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Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        MSRSGQPPDLKKYMDKKLQIKLNANR+VVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR Q
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

A0A5D3C6A2 Small nuclear ribonucleoprotein G

1.5e-34

97.5

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Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        MSRSGQPPDLKKYMDKKLQIKLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR Q
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

A0A6I9U280 Small nuclear ribonucleoprotein G

1.5e-34

97.5

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Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        MSRSGQPPDLKKYMDKKLQIKLNANR+VVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR Q
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

A0A6J1BSY9 Small nuclear ribonucleoprotein G

3.0e-35

98.75

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Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        MSRSGQPPDLKKYMDKKLQIKLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

SwissProt top hits

e value

%identity

Alignment

O82221 Probable small nuclear ribonucleoprotein G

4.9e-35

92.41

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Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT
        MSRSGQPPDLKKYMDKKLQIKLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEALEPV R+
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT

P24715 Probable small nuclear ribonucleoprotein G

3.3e-31

89.47

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Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPV
        MS SGQPP LKKYMDK+LQI L ANR++VGTLRGFDQFMNLVVDNTVEVNGNEK DIGMVVIRGNSVVTVEALEPV
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPV

P62308 Small nuclear ribonucleoprotein G

1.0e-16

61.97

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Query:  PPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEALEPV
        PP+LKK+MDKKL +KLN  R V G LRGFD FMNLV+D  VE+    ++ +IGMVVIRGNS++ +EALE V
Subjt:  PPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEALEPV

Q3ZBL0 Small nuclear ribonucleoprotein G

1.0e-16

61.97

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Query:  PPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEALEPV
        PP+LKK+MDKKL +KLN  R V G LRGFD FMNLV+D  VE+    ++ +IGMVVIRGNS++ +EALE V
Subjt:  PPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEALEPV

Q9VXE0 Probable small nuclear ribonucleoprotein G

1.6e-17

63.38

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Query:  PPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTV-EVNGNEKTDIGMVVIRGNSVVTVEALEPV
        PP++KKYMDK++ +KLN  R V G LRGFD FMN+V+D+TV E   N K +IGMVVIRGNS+V VEAL+ V
Subjt:  PPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTV-EVNGNEKTDIGMVVIRGNSVVTVEALEPV

Arabidopsis top hits

e value

%identity

Alignment

AT2G03870.1 Small nuclear ribonucleoprotein family protein

6.8e-08

39.44

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Query:  DLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRGNSVVTV
        DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  VE            ++   +G++V RG +V+ V
Subjt:  DLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRGNSVVTV

AT2G03870.2 Small nuclear ribonucleoprotein family protein

6.8e-08

39.44

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Query:  DLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRGNSVVTV
        DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  VE            ++   +G++V RG +V+ V
Subjt:  DLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRGNSVVTV

AT2G23930.1 probable small nuclear ribonucleoprotein G

3.5e-36

92.41

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Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT
        MSRSGQPPDLKKYMDKKLQIKLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEALEPV R+
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT

AT2G23930.2 probable small nuclear ribonucleoprotein G

4.5e-28

90.91

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Query:  MDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT
        MDKKLQIKLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEALEPV R+
Subjt:  MDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT

AT3G11500.1 Small nuclear ribonucleoprotein family protein

4.5e-36

92.41

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Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT
        MSRSGQPPDLKKYMDKKLQIKLNANR+VVGTLRGFDQFMNLVVDNTVEVNG++KTDIGMVVIRGNS+VTVEALEPV R+
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT

Sequences

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CDS sequence

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ATGAGTAGGTCAGGCCAGCCTCCAGATCTCAAAAAATACATGGACAAAAAGCTTCAGATAAAACTCAATGCTAATCGCTTGGTAGTTGGAACTCTTCGTGGGTTTGACCA
ATTTATGAATCTAGTGGTTGACAACACTGTGGAAGTGAATGGCAACGAGAAAACTGATATTGGCATGGTGGTGATTAGGGGCAATAGTGTGGTCACTGTTGAAGCACTTG
AACCAGTAAACAGGACGCAGTGA

mRNA sequence

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Protein sequence

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MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

Lag0012775 (gene) of Sponge gourd (AG-4) v1 genome