; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0012846 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012846
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr1:44933083..44935452
RNA-Seq ExpressionLag0012846
SyntenyLag0012846
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032941.1 hypothetical protein E6C27_scaffold269G00150 [Cucumis melo var. makuwa]1.6e-1666.67Show/hide
Query:  STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP
        ST TR SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M  L+ K F E N D K+HSR+SSRMKRK SV INTEGS    P
Subjt:  STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP

KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]4.7e-1664.71Show/hide
Query:  MSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP
        MST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M + + K F E N D K+HSR+ SRMKRK SV INTEGSL   P
Subjt:  MSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.2e-1665.48Show/hide
Query:  STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP
        ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HSR+ SRMKRK SV INTEGSL   P
Subjt:  STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]6.2e-1665.48Show/hide
Query:  STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP
        ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HSR+ SRMKRK SV INTEGSL   P
Subjt:  STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP

KAA0057874.1 gag protease polyprotein [Cucumis melo var. makuwa]1.6e-1666.67Show/hide
Query:  STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP
        ST TR SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M  L+ K F E N D K+H+R+SSRMKRK SV INTEGSL   P
Subjt:  STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP

TrEMBL top hitse value%identityAlignment
A0A5A7STU1 Uncharacterized protein7.9e-1766.67Show/hide
Query:  STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP
        ST TR SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M  L+ K F E N D K+HSR+SSRMKRK SV INTEGS    P
Subjt:  STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP

A0A5A7SZJ7 Retrotransposon gag protein2.3e-1664.71Show/hide
Query:  MSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP
        MST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M + + K F E N D K+HSR+ SRMKRK SV INTEGSL   P
Subjt:  MSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP

A0A5A7TQ06 Retrotransposon gag protein3.0e-1665.48Show/hide
Query:  STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP
        ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HSR+ SRMKRK SV INTEGSL   P
Subjt:  STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP

A0A5A7URU7 Gag protease polyprotein7.9e-1766.67Show/hide
Query:  STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP
        ST TR SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M  L+ K F E N D K+H+R+SSRMKRK SV INTEGSL   P
Subjt:  STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP

A0A5D3BBF9 Gag protease polyprotein3.0e-1665.48Show/hide
Query:  STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP
        ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HSR+ SRMKRK SV INTEGSL   P
Subjt:  STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCAAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCA
ACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGAATCTCGTCACGTATGAAGAGGAAGTTTTCTGTTC
TCATAAATACGGAAGGTTCCTTGAAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTACAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTG
CAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGTTTCGTTGCAGT
TCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTACCTTCCTCCAAGCTCGAAGGTTC
TCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACCCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTGTTGCTACCTTCCTCCA
AGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGC
TCCTTCTCCAAGTTCGAAGGCGCTTCTCCCCACTACTCCTTCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCG
TTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAG
GCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTGAAGTTGACGGCGTC
TGCTGCGCTTCATCTACAAATGTTGGCAGTTGACGGCGTCCGCTTCGCTTCATCTTCAAAAATTGACTGTGGTGAAGTCACTGCAATTGAATTGATGACGACCGTTGAAG
GCAAGTCGGGTCTGGTGACCACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATGAGGCGAATCTGGTGACTACCCCTGCAGGT
TACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATCGCTGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATGAAGGCGA
ATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATCGCTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCAAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCA
ACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGAATCTCGTCACGTATGAAGAGGAAGTTTTCTGTTC
TCATAAATACGGAAGGTTCCTTGAAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTACAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTG
CAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGTTTCGTTGCAGT
TCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTACCTTCCTCCAAGCTCGAAGGTTC
TCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACCCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTGTTGCTACCTTCCTCCA
AGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGC
TCCTTCTCCAAGTTCGAAGGCGCTTCTCCCCACTACTCCTTCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCG
TTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAG
GCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTGAAGTTGACGGCGTC
TGCTGCGCTTCATCTACAAATGTTGGCAGTTGACGGCGTCCGCTTCGCTTCATCTTCAAAAATTGACTGTGGTGAAGTCACTGCAATTGAATTGATGACGACCGTTGAAG
GCAAGTCGGGTCTGGTGACCACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATGAGGCGAATCTGGTGACTACCCCTGCAGGT
TACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATCGCTGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATGAAGGCGA
ATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATCGCTGTAG
Protein sequenceShow/hide protein sequence
MSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLPPKFEGSHALRYSSFLTVRRFSRASL
QFLPPKFEGSHVASLQFLPPSLKVLTSLRFALRFVAVPSSKFEGSHALRCTVPSSKFEGSHALRCYLPPSSKVLSRAAAAPSSKFEGSLTRFARSFSKFEGASLCCYLPP
SSKVLSRAAAVPSSKLKVPSRASLAPSPSSKALLSTAPSPSSKALLPTTPSPSSKVPSRASLAPSPSSKALLSVATFLQVRRFSHALLQFLPPSLKVPSRASLAPSPSSK
ALLSTAPSPSSKALLSTAPSPSSKVLLSTPLLKLTASAALHLQMLAVDGVRFASSSKIDCGEVTAIELMTTVEGKSGLVTTPAGYSDHPIKWGLGLAGVHEANLVTTPAG
YSDHPIKWGLGLAGVHRCYSDHPIKWGLGLAGVHEGESGDYPCRLLRSPNKMGTGSSRSASL