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Lag0012848 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012848
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr1:44947364..44947705
RNA-Seq ExpressionLag0012848
SyntenyLag0012848
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3487801.1 reverse transcriptase [Gossypium australe]1.9e-0532.11Show/hide
Query:  SVDLTEGWTMLRGIQIAHQMGFSRFHVETDSLRLSRVLNDDVDDISEVGAIMNLIRSLLQRDSSCRVLFTPRQGNLVVHTMA-SLASLYANFIWFEDWSI
        SV L E   +L G+  A +MGFS   +E+D   + + L    +D SE+  +    ++L +  SSCR  F  R GN   H MA      Y +F W ED  +
Subjt:  SVDLTEGWTMLRGIQIAHQMGFSRFHVETDSLRLSRVLNDDVDDISEVGAIMNLIRSLLQRDSSCRVLFTPRQGNLVVHTMA-SLASLYANFIWFEDWSI

Query:  VTSDVLSRD
           ++   D
Subjt:  VTSDVLSRD

KAF7825130.1 putative RNA-directed DNA polymerase [Senna tora]6.5e-0632.41Show/hide
Query:  VDLTEGWTMLRGIQIAHQMGFSRFHVETDSLRLSRVLNDDVDDISEVGAIMNLIRSLLQRDSSCRVLFTPRQGNLVVHTMASLA-SLYANFIWFEDWSIV
        VDL E +  L G+++A ++      +E D+ ++   +N    ++S +G +++ IR  +   S+ RV +TPR  NLV H +A+ A  +  + IW ED    
Subjt:  VDLTEGWTMLRGIQIAHQMGFSRFHVETDSLRLSRVLNDDVDDISEVGAIMNLIRSLLQRDSSCRVLFTPRQGNLVVHTMASLA-SLYANFIWFEDWSIV

Query:  TSDVLSRD
         SDVL  D
Subjt:  TSDVLSRD

XP_021726822.1 uncharacterized protein LOC110693947 [Chenopodium quinoa]1.1e-0531.82Show/hide
Query:  VDLTEGWTMLRGIQIAHQMGFSRFHVETDSLRLSRVLNDDVDDISEVGAIMNLIRSLLQRDSSCRVLFTPRQGNLVVHTMASLASLYANF-IWFEDWSIV
        VD+ E   M   +QI  + GFS   +ETD L+L   L       +  G I+N I +L +    C   F  R GN V H++A L ++Y++  +W ED+   
Subjt:  VDLTEGWTMLRGIQIAHQMGFSRFHVETDSLRLSRVLNDDVDDISEVGAIMNLIRSLLQRDSSCRVLFTPRQGNLVVHTMASLASLYANF-IWFEDWSIV

Query:  TSDVLSRDFS
         +  +  D S
Subjt:  TSDVLSRDFS

XP_021768618.1 uncharacterized protein LOC110732940 [Chenopodium quinoa]1.1e-0530.91Show/hide
Query:  VDLTEGWTMLRGIQIAHQMGFSRFHVETDSLRLSRVLNDDVDDISEVGAIMNLIRSLLQRDSSCRVLFTPRQGNLVVHTMASLASLYANF-IWFEDWSIV
        VD+ E   M   +Q+  + GFS   +ETD  +L   L+      +  G I+N I  L +   +C   F  R GN V H++A L + Y +F +W E++   
Subjt:  VDLTEGWTMLRGIQIAHQMGFSRFHVETDSLRLSRVLNDDVDDISEVGAIMNLIRSLLQRDSSCRVLFTPRQGNLVVHTMASLASLYANF-IWFEDWSIV

Query:  TSDVLSRDFS
         S+++  D S
Subjt:  TSDVLSRDFS

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]1.3e-0939.29Show/hide
Query:  VDLTEGWTMLRGIQIAHQMGFSRFHVETDSLRLSRVLNDDVDDISEVGAIMNLIRSLLQRDSS-CRVLFTPRQGNLVVHTMASLASLYANF-IWFEDWSI
        VD  EG+ +  GI +A + GF RF +ETDSLR+  +L  D  D SEVG + ++I+  L   +      FT R GN   H +A LA    +  IW E+W  
Subjt:  VDLTEGWTMLRGIQIAHQMGFSRFHVETDSLRLSRVLNDDVDDISEVGAIMNLIRSLLQRDSS-CRVLFTPRQGNLVVHTMASLASLYANF-IWFEDWSI

Query:  VTSDVLSRDFSS
          S VL+ D  S
Subjt:  VTSDVLSRDFSS

TrEMBL top hitse value%identityAlignment
A0A5B6X0L3 Reverse transcriptase9.1e-0632.11Show/hide
Query:  SVDLTEGWTMLRGIQIAHQMGFSRFHVETDSLRLSRVLNDDVDDISEVGAIMNLIRSLLQRDSSCRVLFTPRQGNLVVHTMA-SLASLYANFIWFEDWSI
        SV L E   +L G+  A +MGFS   +E+D   + + L    +D SE+  +    ++L +  SSCR  F  R GN   H MA      Y +F W ED  +
Subjt:  SVDLTEGWTMLRGIQIAHQMGFSRFHVETDSLRLSRVLNDDVDDISEVGAIMNLIRSLLQRDSSCRVLFTPRQGNLVVHTMA-SLASLYANFIWFEDWSI

Query:  VTSDVLSRD
           ++   D
Subjt:  VTSDVLSRD

A0A6J1C467 uncharacterized protein LOC1110077752.7e-0531.25Show/hide
Query:  VDLTEGWTMLRGIQIAHQMGFSRFHVETDSLRLSRVLNDDVDDISEVGAIMNLIRSLLQRDSSCRV----LFTPRQGNLVVHTMASLASLYANF-IWFED
        V L E      G+ +A + G   F +ETDS ++  +L  D +D SE+G + + IR ++   SS  +     F  R+GN   HT+A +  +  +F +W E+
Subjt:  VDLTEGWTMLRGIQIAHQMGFSRFHVETDSLRLSRVLNDDVDDISEVGAIMNLIRSLLQRDSSCRV----LFTPRQGNLVVHTMASLASLYANF-IWFED

Query:  WSIVTSDVLSRD
        W    S+V++ D
Subjt:  WSIVTSDVLSRD

A0A6J1DBJ7 uncharacterized protein LOC1110189736.1e-1039.29Show/hide
Query:  VDLTEGWTMLRGIQIAHQMGFSRFHVETDSLRLSRVLNDDVDDISEVGAIMNLIRSLLQRDSS-CRVLFTPRQGNLVVHTMASLASLYANF-IWFEDWSI
        VD  EG+ +  GI +A + GF RF +ETDSLR+  +L  D  D SEVG + ++I+  L   +      FT R GN   H +A LA    +  IW E+W  
Subjt:  VDLTEGWTMLRGIQIAHQMGFSRFHVETDSLRLSRVLNDDVDDISEVGAIMNLIRSLLQRDSS-CRVLFTPRQGNLVVHTMASLASLYANF-IWFEDWSI

Query:  VTSDVLSRDFSS
          S VL+ D  S
Subjt:  VTSDVLSRDFSS

A0A7J8UJ53 RNase H domain-containing protein2.0e-0532.11Show/hide
Query:  SVDLTEGWTMLRGIQIAHQMGFSRFHVETDSLRLSRVLNDDVDDISEVGAIMNLIRSLLQRDSSCRVLFTPRQGNLVVHTMASLASLYA-NFIWFEDWSI
        +V L E   +L  +Q A  MGFS   +E+DS  + + L    +D SE+  I   + ++L+  +SCR  F  R+GN+  HTMAS    ++ +F W E+  +
Subjt:  SVDLTEGWTMLRGIQIAHQMGFSRFHVETDSLRLSRVLNDDVDDISEVGAIMNLIRSLLQRDSSCRVLFTPRQGNLVVHTMASLASLYA-NFIWFEDWSI

Query:  VTSDVLSRD
           ++   D
Subjt:  VTSDVLSRD

A0A803LHG6 Uncharacterized protein5.4e-0631.53Show/hide
Query:  VDLTEGWTMLRGIQIAHQMGFSRFHVETDSLRLSRVLNDDVDDISEVGAIMNLIRSLLQRDSSCRVLFTPRQGNLVVHTMASLASLYANF-IWFEDWSIV
        VD+ E   M   ++IA + GF R  +ETD+L+L   L     D +  G ++  I +L     SC   F  R+GN V H++A L+S +    +W E++   
Subjt:  VDLTEGWTMLRGIQIAHQMGFSRFHVETDSLRLSRVLNDDVDDISEVGAIMNLIRSLLQRDSSCRVLFTPRQGNLVVHTMASLASLYANF-IWFEDWSIV

Query:  TSDVLSRDFSS
          +++  D SS
Subjt:  TSDVLSRDFSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAGTGTTGATTTGACTGAGGGATGGACAATGTTGAGAGGTATACAAATAGCTCACCAAATGGGTTTTTCTAGGTTCCATGTTGAGACTGATTCGCTAAGACTTTC
AAGAGTTTTAAATGACGATGTGGATGATATTTCGGAAGTAGGAGCAATTATGAACTTGATTCGCAGCTTGCTCCAGCGTGATTCTTCATGTAGGGTGTTGTTCACTCCTA
GGCAAGGCAATTTGGTAGTTCATACCATGGCTTCTTTGGCTTCTTTATATGCTAATTTTATTTGGTTTGAGGATTGGTCCATTGTGACTTCTGATGTACTTAGTCGTGAT
TTTTCCTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGAGTGTTGATTTGACTGAGGGATGGACAATGTTGAGAGGTATACAAATAGCTCACCAAATGGGTTTTTCTAGGTTCCATGTTGAGACTGATTCGCTAAGACTTTC
AAGAGTTTTAAATGACGATGTGGATGATATTTCGGAAGTAGGAGCAATTATGAACTTGATTCGCAGCTTGCTCCAGCGTGATTCTTCATGTAGGGTGTTGTTCACTCCTA
GGCAAGGCAATTTGGTAGTTCATACCATGGCTTCTTTGGCTTCTTTATATGCTAATTTTATTTGGTTTGAGGATTGGTCCATTGTGACTTCTGATGTACTTAGTCGTGAT
TTTTCCTCCTAA
Protein sequenceShow/hide protein sequence
MLSVDLTEGWTMLRGIQIAHQMGFSRFHVETDSLRLSRVLNDDVDDISEVGAIMNLIRSLLQRDSSCRVLFTPRQGNLVVHTMASLASLYANFIWFEDWSIVTSDVLSRD
FSS