; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0012849 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012849
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr1:44952902..44954985
RNA-Seq ExpressionLag0012849
SyntenyLag0012849
Gene Ontology termsGO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023537968.1 uncharacterized protein LOC111798850 [Cucurbita pepo subsp. pepo]2.1e-1939.77Show/hide
Query:  FKEAFFQKYYSVIISYRKEKEFLILSQGEKSVEEYELEFTRLSRFAPEAVDTEVKKTKRFIVGLRDDVQRVVGALGLANYASALRATTFMGMPTVNATPV
        FKEAF+++YYS     +K++EF  L+Q  +SV  Y  +F RL RFA E VDTE+KK +RFI GL ++++ +VGA+    Y  ALR+ T +   +V     
Subjt:  FKEAFFQKYYSVIISYRKEKEFLILSQGEKSVEEYELEFTRLSRFAPEAVDTEVKKTKRFIVGLRDDVQRVVGALGLANYASALRATTFMGMPTVNATPV

Query:  AKESEPNVGQKRKHEQTTTNLQRSQPSSESSRQKTHHDK----------QEGNGGEKPKCNSCGRHHWSQCMARKG
             P VGQKR ++Q     Q  QP  +  +Q   + K          Q G G  KP C  CG++HW QC+AR G
Subjt:  AKESEPNVGQKRKHEQTTTNLQRSQPSSESSRQKTHHDK----------QEGNGGEKPKCNSCGRHHWSQCMARKG

XP_023546459.1 uncharacterized protein LOC111805576 [Cucurbita pepo subsp. pepo]4.3e-1738.04Show/hide
Query:  FKEAFFQKYYSVIISYRKEKEFLILSQGEKSVEEYELEFTRLSRFAPEAVDTEVKKTKRFIVGLRDDVQRVVGALGLANYASALRATTFM-GMPTVNATP
        FK AF ++YY   +  RK++EF  LSQ  +SV  Y  EF++L RFAPE V+T+ +  +RF++GL   + + V A+ LA YA ALRA   M G+ + + TP
Subjt:  FKEAFFQKYYSVIISYRKEKEFLILSQGEKSVEEYELEFTRLSRFAPEAVDTEVKKTKRFIVGLRDDVQRVVGALGLANYASALRATTFM-GMPTVNATP

Query:  VAKESEPNVGQKRKHEQTTTNLQRSQPSSESSRQKTHHDKQEGNGGEKPKCNSCGRHHWSQCM
               +VGQKR+H                     H ++ +G    KPKCN CG++HW +C+
Subjt:  VAKESEPNVGQKRKHEQTTTNLQRSQPSSESSRQKTHHDKQEGNGGEKPKCNSCGRHHWSQCM

XP_038880159.1 uncharacterized protein LOC120071839 [Benincasa hispida]1.6e-2443.45Show/hide
Query:  FKEAFFQKYYSVIISYRKEKEFLILSQGEKSVEEYELEFTRLSRFAPEAVDTEVKKTKRFIVGLRDDVQRVVGALGLANYASALRATTFMGMPTVNATPV
        FKE F++KY+S  + Y K+ EF+ L QG  +VEEYE +FTRLS FAP+ V TE K+ +RF+ GLRD+V+ +V AL   NYA+A RA   +G P+      
Subjt:  FKEAFFQKYYSVIISYRKEKEFLILSQGEKSVEEYELEFTRLSRFAPEAVDTEVKKTKRFIVGLRDDVQRVVGALGLANYASALRATTFMGMPTVNATPV

Query:  AKESEPNVGQKRKHEQTTTNLQRSQPSSESSR--QKTHHDKQEGNGGEKPKCNSCGRHHWSQCMARKG
        +   EP  GQKRK EQ      +   S++ S+   + H     G   E+P C SCG+HHW  C+   G
Subjt:  AKESEPNVGQKRKHEQTTTNLQRSQPSSESSR--QKTHHDKQEGNGGEKPKCNSCGRHHWSQCMARKG

XP_038882311.1 uncharacterized protein LOC120073551 [Benincasa hispida]2.5e-1737.13Show/hide
Query:  FKEAFFQKYYSVIISYRKEKEFLILSQGEKSVEEYELEFTRLSRFAPEAVDTEVKKTKRFIVGLRDDVQRVVGALGLANYASALRATTFMGMPTVNATPV
        FKE F++KY+S    Y K+ EFL   QG  SVEEYE +F +LS FAP+ V TE  +T  FI GL+  ++ +V AL L  YA+AL A   +   +      
Subjt:  FKEAFFQKYYSVIISYRKEKEFLILSQGEKSVEEYELEFTRLSRFAPEAVDTEVKKTKRFIVGLRDDVQRVVGALGLANYASALRATTFMGMPTVNATPV

Query:  AKESE--PNVGQKRKHEQTTTNLQRSQPSSESSRQKTHHDKQEGNGGEKPKCNSCGRHHWSQCMARKGLFLSLLENASSA-ASPLFALATTANPPSRQ-Q
         +      + GQKRK  Q T+  Q+ +P +                 EKP CNSC +HHW +C+AR G+     +    A   P  +     N PS Q Q
Subjt:  AKESE--PNVGQKRKHEQTTTNLQRSQPSSESSRQKTHHDKQEGNGGEKPKCNSCGRHHWSQCMARKGLFLSLLENASSA-ASPLFALATTANPPSRQ-Q

Query:  VG
        VG
Subjt:  VG

XP_038891712.1 uncharacterized protein LOC120081110 [Benincasa hispida]7.1e-2039.18Show/hide
Query:  FKEAFFQKYYSVIISYRKEKEFLILSQGEKSVEEYELEFTRLSRFAPEAVDTEVKKTKRFIVGLRDDVQRVVGALGLANYASALRATTFMGMPTVNATPV
        FKE F+ KY+S  + Y K++EFL L QG +SVEEY+ EF  LSRFAPE V TE  + +RFI GL++ ++ +V A     +  ALR    +   + +   +
Subjt:  FKEAFFQKYYSVIISYRKEKEFLILSQGEKSVEEYELEFTRLSRFAPEAVDTEVKKTKRFIVGLRDDVQRVVGALGLANYASALRATTFMGMPTVNATPV

Query:  AKESEPNVGQKRKHEQTTTNLQRSQPSSESSRQKTHHDKQEGNGGE----KPKCNSCGRHHWSQCMARKGL
           + P+ GQKRK +Q        Q    S R   H  +Q    G     +P C+SCGR HW QC+A  G+
Subjt:  AKESEPNVGQKRKHEQTTTNLQRSQPSSESSRQKTHHDKQEGNGGE----KPKCNSCGRHHWSQCMARKGL

TrEMBL top hitse value%identityAlignment
A0A5A7TG66 Gag protease polyprotein8.0e-1733.04Show/hide
Query:  FKEAFFQKYYSVIISYRKEKEFLILSQGEKSVEEYELEFTRLSRFAPEAVDTEVKKTKRFIVGLRDDVQRVVGALGLANYASALRATTFMGMPTVNATPV
        FKE F+ K++S  + + K +EFL L QG+ +VE+Y+ EF  LSRFAP+ V  E  +T++F+ GLR D+Q +V AL  A +A ALR    + +P  + +  
Subjt:  FKEAFFQKYYSVIISYRKEKEFLILSQGEKSVEEYELEFTRLSRFAPEAVDTEVKKTKRFIVGLRDDVQRVVGALGLANYASALRATTFMGMPTVNATPV

Query:  AKESEPNVGQKRKHEQTTTNLQRSQPSSESSRQKTHHDKQEGNG---GEKPKCNSCGRHHWSQCMARKGLFLSLLENASSA-ASPLFALATTANPPSRQQ
        A      +GQKRK E T  ++   +        + H  +   +G    E P C +CGR H  +C+A  G+     ++  +A   P     TT   PS  Q
Subjt:  AKESEPNVGQKRKHEQTTTNLQRSQPSSESSRQKTHHDKQEGNG---GEKPKCNSCGRHHWSQCMARKGLFLSLLENASSA-ASPLFALATTANPPSRQQ

Query:  VGRIVEVRLPKKPSGLNVSVSSLDCLG
         GR+      +      V   +L  LG
Subjt:  VGRIVEVRLPKKPSGLNVSVSSLDCLG

A0A5A7TP01 Reverse transcriptase8.0e-1733.77Show/hide
Query:  FKEAFFQKYYSVIISYRKEKEFLILSQGEKSVEEYELEFTRLSRFAPEAVDTEVKKTKRFIVGLRDDVQRVVGALGLANYASALRATTFMGMPTVNATPV
        F+E+F+ K++S  + + K +EFL L QG+ SVE+Y+ EF  LSRFAP+ V  E  +T+RF+ GLR D+Q  V AL    +A ALR    + +        
Subjt:  FKEAFFQKYYSVIISYRKEKEFLILSQGEKSVEEYELEFTRLSRFAPEAVDTEVKKTKRFIVGLRDDVQRVVGALGLANYASALRATTFMGMPTVNATPV

Query:  AKESEPNVGQKRKHEQTTTNLQRSQPSSESSRQKTHHDKQEGNGG----EKPKCNSCGRHHWSQCMARKGLFLSLLENASSA-ASPLFALATTANPPSRQ
           +    GQKRK E     + +  P S    Q+  H ++    G    E P C +CG+ H  QC+A  G+     +   +A A P   L TT   PS  
Subjt:  AKESEPNVGQKRKHEQTTTNLQRSQPSSESSRQKTHHDKQEGNGG----EKPKCNSCGRHHWSQCMARKGLFLSLLENASSA-ASPLFALATTANPPSRQ

Query:  QVGRIVEVRLPKKPSGLNVSVSSLDCLG
        Q GR+      +      V   +L  LG
Subjt:  QVGRIVEVRLPKKPSGLNVSVSSLDCLG

A0A5A7UJ81 Reverse transcriptase2.7e-1734.51Show/hide
Query:  FKEAFFQKYYSVIISYRKEKEFLILSQGEKSVEEYELEFTRLSRFAPEAVDTEVKKTKRFIVGLRDDVQRVVGALGLANYASALRATTFMGMPTVNATPV
        FKE+F+ K++S  + + K +EFL L QG+ +VE+Y+ EF  LSRFAP+ V  E  +T++F+ GLR D+Q +V AL  A +A ALR    + +P    +  
Subjt:  FKEAFFQKYYSVIISYRKEKEFLILSQGEKSVEEYELEFTRLSRFAPEAVDTEVKKTKRFIVGLRDDVQRVVGALGLANYASALRATTFMGMPTVNATPV

Query:  AKESEPNVGQKRKHE-QTTTNLQRSQPSSESSRQKTHHDKQEGNG-GEKPKCNSCGRHHWSQCMARKGLFLSLLENASSA-ASPLFALATTANPPSRQQV
        A      +GQKRK E Q     QR+  S    ++        G   GE P C +CGR H  +C+A  G+     +   +A   P     TT   PS  Q 
Subjt:  AKESEPNVGQKRKHE-QTTTNLQRSQPSSESSRQKTHHDKQEGNG-GEKPKCNSCGRHHWSQCMARKGLFLSLLENASSA-ASPLFALATTANPPSRQQV

Query:  GRIVEVRLPKKPSGLNVSVSSLDCLG
        GR+      +      V   +L  LG
Subjt:  GRIVEVRLPKKPSGLNVSVSSLDCLG

A0A5D3E340 Ty3-gypsy retrotransposon protein8.0e-1733.76Show/hide
Query:  FKEAFFQKYYSVIISYRKEKEFLILSQGEKSVEEYELEFTRLSRFAPEAVDTEVKKTKRFIVGLRDDVQRVVGALGLANYASALRATTFMGMPTVNATPV
        FKE F+ K++S  + + K +EFL L QG+ +VE+Y+ EF  LSRFAP+ V  E  +T++F+ GLR D+Q +V AL  A +A+ALR    + +        
Subjt:  FKEAFFQKYYSVIISYRKEKEFLILSQGEKSVEEYELEFTRLSRFAPEAVDTEVKKTKRFIVGLRDDVQRVVGALGLANYASALRATTFMGMPTVNATPV

Query:  AKESEPNVGQKRKHEQTTTNLQRSQPSSESSRQ-------KTHHDKQEGNG---GEKPKCNSCGRHHWSQCMARKGLFLSLLENASSA-ASPLFALATTA
        A     ++GQKRK E        SQP+    R        + H  K    G    E P C  CGR H   C+   G+     ++  +A A P     TT 
Subjt:  AKESEPNVGQKRKHEQTTTNLQRSQPSSESSRQ-------KTHHDKQEGNG---GEKPKCNSCGRHHWSQCMARKGLFLSLLENASSA-ASPLFALATTA

Query:  NPPSRQQVGRIVEVRLPKKPSGLNVSVSSLDCLG
        + PS  Q GR+      K      V   +L  LG
Subjt:  NPPSRQQVGRIVEVRLPKKPSGLNVSVSSLDCLG

A0A5D3E628 Ty3-gypsy retrotransposon protein8.0e-1733.76Show/hide
Query:  FKEAFFQKYYSVIISYRKEKEFLILSQGEKSVEEYELEFTRLSRFAPEAVDTEVKKTKRFIVGLRDDVQRVVGALGLANYASALRATTFMGMPTVNATPV
        FKE F+ K++S  + + K +EFL L QG+ +VE+Y+ EF  LSRFAP+ V  E  +T++F+ GLR D+Q +V AL  A +A+ALR    + +        
Subjt:  FKEAFFQKYYSVIISYRKEKEFLILSQGEKSVEEYELEFTRLSRFAPEAVDTEVKKTKRFIVGLRDDVQRVVGALGLANYASALRATTFMGMPTVNATPV

Query:  AKESEPNVGQKRKHEQTTTNLQRSQPSSESSRQ-------KTHHDKQEGNG---GEKPKCNSCGRHHWSQCMARKGLFLSLLENASSA-ASPLFALATTA
        A     ++GQKRK E        SQP+    R        + H  K    G    E P C  CGR H   C+   G+     ++  +A A P     TT 
Subjt:  AKESEPNVGQKRKHEQTTTNLQRSQPSSESSRQ-------KTHHDKQEGNG---GEKPKCNSCGRHHWSQCMARKGLFLSLLENASSA-ASPLFALATTA

Query:  NPPSRQQVGRIVEVRLPKKPSGLNVSVSSLDCLG
        + PS  Q GR+      K      V   +L  LG
Subjt:  NPPSRQQVGRIVEVRLPKKPSGLNVSVSSLDCLG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGAACCGATATCACATCCGAATGAGAGAGATCTTGAGGACATGAAAACAATGAACATAAAGCTTAAAAGAATTGATAAGCCTATACCAACAAGGTGCACCTTCCT
TTTCGATGGCTCAATCATAGGAACTTTGAAGTTAAGCGTGTTTAGCTTGGAGAAGCTCTATTTCAAGGAGGCGTTCTTCCAGAAATATTACTCGGTCATTATCAGTTATA
GAAAGGAGAAGGAGTTCCTAATCTTGTCGCAAGGGGAAAAGTCAGTAGAAGAGTACGAACTGGAGTTCACCCGACTGTCCCGATTCGCTCCTGAAGCGGTGGACACGGAG
GTGAAGAAGACAAAGAGGTTCATTGTGGGCCTCAGAGATGACGTGCAGAGGGTGGTTGGAGCCCTTGGCCTAGCGAACTACGCATCGGCCCTTCGAGCGACCACCTTTAT
GGGCATGCCAACTGTTAATGCAACTCCAGTAGCCAAGGAGTCAGAGCCCAACGTAGGACAGAAGAGGAAACATGAGCAGACAACTACCAACCTCCAGCGATCTCAACCTT
CATCCGAAAGTTCTAGACAAAAAACTCATCATGACAAACAGGAGGGCAATGGAGGTGAAAAACCAAAGTGCAACTCTTGTGGAAGACATCATTGGAGTCAGTGCATGGCG
AGGAAAGGTCTCTTCCTCTCTCTCCTCGAAAATGCCTCCAGCGCCGCCTCTCCCCTCTTTGCTCTCGCAACGACTGCGAATCCTCCCTCACGGCAGCAAGTAGGTCGTAT
CGTGGAAGTTCGCCTCCCTAAGAAACCTTCTGGTTTGAATGTTTCTGTTTCTTCTCTTGATTGTCTTGGTTTGCATTTAGTTTCTACTCTTGGTTGTCTCTGTGCTCGTG
GAGATCCCCTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATGAACCGATATCACATCCGAATGAGAGAGATCTTGAGGACATGAAAACAATGAACATAAAGCTTAAAAGAATTGATAAGCCTATACCAACAAGGTGCACCTTCCT
TTTCGATGGCTCAATCATAGGAACTTTGAAGTTAAGCGTGTTTAGCTTGGAGAAGCTCTATTTCAAGGAGGCGTTCTTCCAGAAATATTACTCGGTCATTATCAGTTATA
GAAAGGAGAAGGAGTTCCTAATCTTGTCGCAAGGGGAAAAGTCAGTAGAAGAGTACGAACTGGAGTTCACCCGACTGTCCCGATTCGCTCCTGAAGCGGTGGACACGGAG
GTGAAGAAGACAAAGAGGTTCATTGTGGGCCTCAGAGATGACGTGCAGAGGGTGGTTGGAGCCCTTGGCCTAGCGAACTACGCATCGGCCCTTCGAGCGACCACCTTTAT
GGGCATGCCAACTGTTAATGCAACTCCAGTAGCCAAGGAGTCAGAGCCCAACGTAGGACAGAAGAGGAAACATGAGCAGACAACTACCAACCTCCAGCGATCTCAACCTT
CATCCGAAAGTTCTAGACAAAAAACTCATCATGACAAACAGGAGGGCAATGGAGGTGAAAAACCAAAGTGCAACTCTTGTGGAAGACATCATTGGAGTCAGTGCATGGCG
AGGAAAGGTCTCTTCCTCTCTCTCCTCGAAAATGCCTCCAGCGCCGCCTCTCCCCTCTTTGCTCTCGCAACGACTGCGAATCCTCCCTCACGGCAGCAAGTAGGTCGTAT
CGTGGAAGTTCGCCTCCCTAAGAAACCTTCTGGTTTGAATGTTTCTGTTTCTTCTCTTGATTGTCTTGGTTTGCATTTAGTTTCTACTCTTGGTTGTCTCTGTGCTCGTG
GAGATCCCCTGTAA
Protein sequenceShow/hide protein sequence
MNEPISHPNERDLEDMKTMNIKLKRIDKPIPTRCTFLFDGSIIGTLKLSVFSLEKLYFKEAFFQKYYSVIISYRKEKEFLILSQGEKSVEEYELEFTRLSRFAPEAVDTE
VKKTKRFIVGLRDDVQRVVGALGLANYASALRATTFMGMPTVNATPVAKESEPNVGQKRKHEQTTTNLQRSQPSSESSRQKTHHDKQEGNGGEKPKCNSCGRHHWSQCMA
RKGLFLSLLENASSAASPLFALATTANPPSRQQVGRIVEVRLPKKPSGLNVSVSSLDCLGLHLVSTLGCLCARGDPL