; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0012855 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012855
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr1:44984309..44985757
RNA-Seq ExpressionLag0012855
SyntenyLag0012855
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015386823.1 uncharacterized protein LOC107177480 [Citrus sinensis]8.0e-1327.98Show/hide
Query:  LKELVDQVDPSFTEEVMKGKVPQKFKVPMFKQYDGKKDSVQHLNAYRSLMDFHGVSDAISQTAVR-----------------------------------
        L ++  + +P F  ++M  K P +F +P  + YDG++D  +HL  YR+LM+  G S AI   A                                     
Subjt:  LKELVDQVDPSFTEEVMKGKVPQKFKVPMFKQYDGKKDSVQHLNAYRSLMDFHGVSDAISQTAVR-----------------------------------

Query:  -------------------ESLRDYITRFNDEALQVEGYSEGATLVAITAELEDERQLNSISKSQPRTYSEFVSRAQKYMSAEELLKSKGSER
                           E+LRDYI ++N+E +QV+GY +G +L  I   L+  +   S+SK  P +YSE ++R +KY +AEE  K++  E+
Subjt:  -------------------ESLRDYITRFNDEALQVEGYSEGATLVAITAELEDERQLNSISKSQPRTYSEFVSRAQKYMSAEELLKSKGSER

XP_022150035.1 uncharacterized protein LOC111018307 [Momordica charantia]1.3e-1533.5Show/hide
Query:  EEVMKGKVPQKFKVPMFKQYDGKKDSVQHLNAYRSLMDFHGVSDAIS-----------------------------------------------------
        EE+MK KVP KFK+P  KQ+DG  D V HL+AYR  MD +GVS+A+                                                      
Subjt:  EEVMKGKVPQKFKVPMFKQYDGKKDSVQHLNAYRSLMDFHGVSDAIS-----------------------------------------------------

Query:  -QTAVRESLRDYITRFNDEALQVEGYSEGATLVAITAELEDERQLNSISKSQPRTYSEFVSRAQKYMSAEELL------KSKGSEREYKRFSSSSYDSKK
         +    ESL DY+ RFN+E LQVEG +   +L+A  +++ DE    S  K  P T+SE +SRAQKYMSA E        + K S++  +R       S+ 
Subjt:  -QTAVRESLRDYITRFNDEALQVEGYSEGATLVAITAELEDERQLNSISKSQPRTYSEFVSRAQKYMSAEELL------KSKGSEREYKRFSSSSYDSKK

Query:  DKRQRT
        +KR R+
Subjt:  DKRQRT

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]3.3e-1929.1Show/hide
Query:  SNGDCHQWRSREEGRGRPQTESPRPRSPLPSSREKQADLKFAALENKVSAMDHNLSRILRILDKPCPSTKTPDERLVRDPKKGKEPMGHTAESGTRSKGK
        S+ DC     R    G PQ   P   +  P+   ++   +  AL            +   +L+      ++ +  LVRDPKKGK P     E  T S G 
Subjt:  SNGDCHQWRSREEGRGRPQTESPRPRSPLPSSREKQADLKFAALENKVSAMDHNLSRILRILDKPCPSTKTPDERLVRDPKKGKEPMGHTAESGTRSKGK

Query:  KIDSMTSKVRGLKPTDHLRNLIEEKRKSAKTVESEARAVEAEARAAEAKAKKDNLPWKTELLNTLNELENPQGDLQK--SKDLGDQNLKELVDQVDPSFT
        K+     ++ G       R  I + RK+ K  +S A            K+  D+   +   L+     + P+   ++   K+ G  +L+EL+DQ D  FT
Subjt:  KIDSMTSKVRGLKPTDHLRNLIEEKRKSAKTVESEARAVEAEARAAEAKAKKDNLPWKTELLNTLNELENPQGDLQK--SKDLGDQNLKELVDQVDPSFT

Query:  EEVMKGKVPQKFKVPMFKQYDGKKDSVQHLNAYRSLMDFHGVSDAIS-----------------------------------------------------
        EE+M+ KVP KFK+P  KQ+D   D V HL+AYR  MD +GVS+A+                                                      
Subjt:  EEVMKGKVPQKFKVPMFKQYDGKKDSVQHLNAYRSLMDFHGVSDAIS-----------------------------------------------------

Query:  -QTAVRESLRDYITRFNDEALQVEGYSEGATLVAITAELEDERQLNSISKSQPRTYSEFVSRAQKYMSAEELLKSK----GSEREYKRFSSSS--YDSKK
         +    ESLRDY+ RFN+E LQVEG ++  +L+A  + + DE    S  K  P T+SE +SRAQ+YMSA E   SK    G   + KR  S      S+ 
Subjt:  -QTAVRESLRDYITRFNDEALQVEGYSEGATLVAITAELEDERQLNSISKSQPRTYSEFVSRAQKYMSAEELLKSK----GSEREYKRFSSSS--YDSKK

Query:  DKRQRTDEE
        +KR R+ ++
Subjt:  DKRQRTDEE

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]4.1e-1732.06Show/hide
Query:  AKAKKDNLPWKTELLNTLNELENPQGDLQK--SKDLGDQNLKELVDQVDPSFTEEVMKGKVPQKFKVPMFKQYDGKKDSVQHLNAYRSLMDFHGVSDAIS
        +K   DN   +   LN    ++ P+   ++   K+ G  +L+EL+ Q D  FTEE+M+ KVP KFK+P  K +DG  + V HL+AYR  MD +GVSDAI 
Subjt:  AKAKKDNLPWKTELLNTLNELENPQGDLQK--SKDLGDQNLKELVDQVDPSFTEEVMKGKVPQKFKVPMFKQYDGKKDSVQHLNAYRSLMDFHGVSDAIS

Query:  ------------------------------------------------------QTAVRESLRDYITRFNDEALQVEGYSEGATLVAITAELEDERQLNS
                                                              +    ESL DY+ RFN+E LQ+EG ++  +L+A  + + DE    S
Subjt:  ------------------------------------------------------QTAVRESLRDYITRFNDEALQVEGYSEGATLVAITAELEDERQLNS

Query:  ISKSQPRTYSEFVSRAQKYMSAEELLKSK----GSEREYKRFSSSS--YDSKKDKRQRTDEE
          K  P T+SE +SRAQ+YMSA E   SK    G   + KR  S      S+ +KR R  ++
Subjt:  ISKSQPRTYSEFVSRAQKYMSAEELLKSK----GSEREYKRFSSSS--YDSKKDKRQRTDEE

XP_024047974.1 uncharacterized protein LOC112101548 [Citrus clementina]1.9e-1431.34Show/hide
Query:  KDLGDQNLKELVDQVDPSFTEEVMKGKVPQKFKVPMFKQYDGKKDSVQHLNAYRSLMDFHGVSDAI---------SQTAVR-------------------
        + +G Q+  +++ + +P FT+E+M+ + P  F++P  + YDG+K  ++H+  YRSLM+  GVS AI         S+ A R                   
Subjt:  KDLGDQNLKELVDQVDPSFTEEVMKGKVPQKFKVPMFKQYDGKKDSVQHLNAYRSLMDFHGVSDAI---------SQTAVR-------------------

Query:  --------------------------ESLRDYITRFNDEALQVEGYSEGATLVAITAELEDERQLNSISKSQPRTYSEFVSRAQKYMSAEELLKSKGSER
                                  ESLR+YI R+N E  QV+GY +G  L  +   L+  R   S++K+ P TYSE +SRA+KY +AEE  +SK    
Subjt:  --------------------------ESLRDYITRFNDEALQVEGYSEGATLVAITAELEDERQLNSISKSQPRTYSEFVSRAQKYMSAEELLKSKGSER

Query:  EYKRFSSSSYDSKKDKR
          K  SS +  +K+D+R
Subjt:  EYKRFSSSSYDSKKDKR

TrEMBL top hitse value%identityAlignment
A0A2N9HMJ8 Ribonuclease H8.6e-1333.54Show/hide
Query:  LENPQGDLQKS-KDLGDQNLKELVDQVDPSFTEEVMKGKVPQKFKVPMFKQYDGKKDSVQHLNAYRSLMDFHGVSDAISQTAV-----------RESLRD
        +    GD++ + K   D+NL  LV Q D  F   +    +P +FKVP  + +DG KD   +L A++++M    + + I   A             ESLR 
Subjt:  LENPQGDLQKS-KDLGDQNLKELVDQVDPSFTEEVMKGKVPQKFKVPMFKQYDGKKDSVQHLNAYRSLMDFHGVSDAISQTAV-----------RESLRD

Query:  YITRFNDEALQVEGYSEGATLVAITAELEDERQLNSISKSQPRTYSEFVSRAQKYMSAEELLKS
        Y+ RFN E +Q++   E  TL A  A L     L  + K  P T SE + +AQK+M+AE+ L+S
Subjt:  YITRFNDEALQVEGYSEGATLVAITAELEDERQLNSISKSQPRTYSEFVSRAQKYMSAEELLKS

A0A6J1D7D2 uncharacterized protein LOC1110183076.4e-1633.5Show/hide
Query:  EEVMKGKVPQKFKVPMFKQYDGKKDSVQHLNAYRSLMDFHGVSDAIS-----------------------------------------------------
        EE+MK KVP KFK+P  KQ+DG  D V HL+AYR  MD +GVS+A+                                                      
Subjt:  EEVMKGKVPQKFKVPMFKQYDGKKDSVQHLNAYRSLMDFHGVSDAIS-----------------------------------------------------

Query:  -QTAVRESLRDYITRFNDEALQVEGYSEGATLVAITAELEDERQLNSISKSQPRTYSEFVSRAQKYMSAEELL------KSKGSEREYKRFSSSSYDSKK
         +    ESL DY+ RFN+E LQVEG +   +L+A  +++ DE    S  K  P T+SE +SRAQKYMSA E        + K S++  +R       S+ 
Subjt:  -QTAVRESLRDYITRFNDEALQVEGYSEGATLVAITAELEDERQLNSISKSQPRTYSEFVSRAQKYMSAEELL------KSKGSEREYKRFSSSSYDSKK

Query:  DKRQRT
        +KR R+
Subjt:  DKRQRT

A0A6J1DWY0 uncharacterized protein LOC1110252931.6e-1929.1Show/hide
Query:  SNGDCHQWRSREEGRGRPQTESPRPRSPLPSSREKQADLKFAALENKVSAMDHNLSRILRILDKPCPSTKTPDERLVRDPKKGKEPMGHTAESGTRSKGK
        S+ DC     R    G PQ   P   +  P+   ++   +  AL            +   +L+      ++ +  LVRDPKKGK P     E  T S G 
Subjt:  SNGDCHQWRSREEGRGRPQTESPRPRSPLPSSREKQADLKFAALENKVSAMDHNLSRILRILDKPCPSTKTPDERLVRDPKKGKEPMGHTAESGTRSKGK

Query:  KIDSMTSKVRGLKPTDHLRNLIEEKRKSAKTVESEARAVEAEARAAEAKAKKDNLPWKTELLNTLNELENPQGDLQK--SKDLGDQNLKELVDQVDPSFT
        K+     ++ G       R  I + RK+ K  +S A            K+  D+   +   L+     + P+   ++   K+ G  +L+EL+DQ D  FT
Subjt:  KIDSMTSKVRGLKPTDHLRNLIEEKRKSAKTVESEARAVEAEARAAEAKAKKDNLPWKTELLNTLNELENPQGDLQK--SKDLGDQNLKELVDQVDPSFT

Query:  EEVMKGKVPQKFKVPMFKQYDGKKDSVQHLNAYRSLMDFHGVSDAIS-----------------------------------------------------
        EE+M+ KVP KFK+P  KQ+D   D V HL+AYR  MD +GVS+A+                                                      
Subjt:  EEVMKGKVPQKFKVPMFKQYDGKKDSVQHLNAYRSLMDFHGVSDAIS-----------------------------------------------------

Query:  -QTAVRESLRDYITRFNDEALQVEGYSEGATLVAITAELEDERQLNSISKSQPRTYSEFVSRAQKYMSAEELLKSK----GSEREYKRFSSSS--YDSKK
         +    ESLRDY+ RFN+E LQVEG ++  +L+A  + + DE    S  K  P T+SE +SRAQ+YMSA E   SK    G   + KR  S      S+ 
Subjt:  -QTAVRESLRDYITRFNDEALQVEGYSEGATLVAITAELEDERQLNSISKSQPRTYSEFVSRAQKYMSAEELLKSK----GSEREYKRFSSSS--YDSKK

Query:  DKRQRTDEE
        +KR R+ ++
Subjt:  DKRQRTDEE

A0A6J1E1E7 uncharacterized protein LOC1110255482.0e-1732.06Show/hide
Query:  AKAKKDNLPWKTELLNTLNELENPQGDLQK--SKDLGDQNLKELVDQVDPSFTEEVMKGKVPQKFKVPMFKQYDGKKDSVQHLNAYRSLMDFHGVSDAIS
        +K   DN   +   LN    ++ P+   ++   K+ G  +L+EL+ Q D  FTEE+M+ KVP KFK+P  K +DG  + V HL+AYR  MD +GVSDAI 
Subjt:  AKAKKDNLPWKTELLNTLNELENPQGDLQK--SKDLGDQNLKELVDQVDPSFTEEVMKGKVPQKFKVPMFKQYDGKKDSVQHLNAYRSLMDFHGVSDAIS

Query:  ------------------------------------------------------QTAVRESLRDYITRFNDEALQVEGYSEGATLVAITAELEDERQLNS
                                                              +    ESL DY+ RFN+E LQ+EG ++  +L+A  + + DE    S
Subjt:  ------------------------------------------------------QTAVRESLRDYITRFNDEALQVEGYSEGATLVAITAELEDERQLNS

Query:  ISKSQPRTYSEFVSRAQKYMSAEELLKSK----GSEREYKRFSSSS--YDSKKDKRQRTDEE
          K  P T+SE +SRAQ+YMSA E   SK    G   + KR  S      S+ +KR R  ++
Subjt:  ISKSQPRTYSEFVSRAQKYMSAEELLKSK----GSEREYKRFSSSS--YDSKKDKRQRTDEE

A0A7J0GZF5 Uncharacterized protein1.5e-1226.56Show/hide
Query:  LENKVSAMDHNLSRILRILDKPCPSTKTPDERLVRDPKKGKEPMGHTAESGTRSKGKKIDSMTSKVRGLKPTDHLRNLIEEKRKSAKTVESEARAVEAEA
        +  ++  M+ N +R++++L    P  + P    V D ++ +    H+  SG RS     +    + R L P+      + E+  S+++ ++  R     +
Subjt:  LENKVSAMDHNLSRILRILDKPCPSTKTPDERLVRDPKKGKEPMGHTAESGTRSKGKKIDSMTSKVRGLKPTDHLRNLIEEKRKSAKTVESEARAVEAEA

Query:  --RAAEAKAKKDNLPWKTELLNTLNELENPQGDLQKSKDLGDQNLKELVDQVDPSFTEEVMKGKVPQKFKVP-MFKQYDGKKDSVQHLNAYRSLMDFHGV
          R    KA+  +   K   L+   +  N   + Q + D        LV Q+DP FTE V+  ++  KFK+P     Y+GK D + HL++Y+ LM   G 
Subjt:  --RAAEAKAKKDNLPWKTELLNTLNELENPQGDLQKSKDLGDQNLKELVDQVDPSFTEEVMKGKVPQKFKVP-MFKQYDGKKDSVQHLNAYRSLMDFHGV

Query:  SDAISQTAV-------------------------RESLRDYITRFNDEALQVEGYSEGATLVAITAELEDERQLNSISKSQPRTYSEFVSRAQKYMSAEE
        SD +   A                           ESL+D++ RFN   L+VE  S+   ++A+   L      +S+SK+ P T S   S+A KY++AEE
Subjt:  SDAISQTAV-------------------------RESLRDYITRFNDEALQVEGYSEGATLVAITAELEDERQLNSISKSQPRTYSEFVSRAQKYMSAEE

Query:  LLKSK
        L ++K
Subjt:  LLKSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAAGGAGATGAAGAAGAAAAACCAGGACGTGAACGCAGAGCATTCGAATGGTGACTGCCACCAGTGGAGGTCACGGGAAGAAGGTCGAGGCCGACCTCAGACCGA
ATCTCCTCGACCTCGGTCTCCACTGCCCTCATCCCGAGAGAAGCAGGCTGATTTAAAATTTGCTGCTCTCGAAAACAAAGTAAGTGCGATGGATCATAATTTGTCCAGGA
TACTTCGTATCTTGGATAAACCTTGTCCTAGCACTAAAACCCCTGATGAGAGGTTGGTTAGGGATCCGAAGAAGGGGAAGGAGCCCATGGGGCACACTGCAGAATCAGGG
ACGAGGTCGAAGGGAAAGAAGATTGACAGCATGACCAGCAAGGTTAGGGGGCTCAAACCTACTGATCACCTGAGAAATCTGATCGAGGAGAAACGCAAAAGTGCCAAAAC
TGTCGAATCCGAGGCCAGAGCCGTCGAAGCTGAGGCCAGGGCAGCCGAGGCCAAGGCCAAGAAAGACAACCTCCCTTGGAAGACTGAGCTTCTAAACACACTAAATGAGC
TCGAAAATCCTCAGGGAGACCTGCAGAAGTCAAAGGACCTTGGAGATCAAAACTTGAAAGAACTAGTCGACCAAGTCGATCCGTCCTTCACAGAAGAAGTCATGAAAGGC
AAGGTGCCCCAAAAGTTTAAGGTACCCATGTTCAAACAGTACGATGGAAAGAAAGACTCTGTGCAACATCTAAACGCATACAGAAGCTTGATGGACTTCCACGGTGTCTC
AGATGCAATCAGTCAAACAGCAGTCAGGGAGAGCTTGCGTGATTACATAACGCGTTTTAATGACGAAGCACTACAGGTTGAGGGGTACAGCGAGGGAGCAACCCTGGTAG
CCATAACAGCCGAACTGGAGGACGAAAGACAGCTCAATTCAATAAGTAAGAGCCAACCTCGAACCTATTCAGAGTTTGTCTCCCGGGCACAGAAGTATATGAGCGCAGAG
GAGTTACTGAAATCAAAGGGGTCAGAACGAGAGTACAAGAGGTTTTCTTCATCTAGCTACGATAGTAAAAAGGACAAAAGACAGCGGACCGACGAGGAGGCCGAGGCCTA
G
mRNA sequenceShow/hide mRNA sequence
ATGAGTAAGGAGATGAAGAAGAAAAACCAGGACGTGAACGCAGAGCATTCGAATGGTGACTGCCACCAGTGGAGGTCACGGGAAGAAGGTCGAGGCCGACCTCAGACCGA
ATCTCCTCGACCTCGGTCTCCACTGCCCTCATCCCGAGAGAAGCAGGCTGATTTAAAATTTGCTGCTCTCGAAAACAAAGTAAGTGCGATGGATCATAATTTGTCCAGGA
TACTTCGTATCTTGGATAAACCTTGTCCTAGCACTAAAACCCCTGATGAGAGGTTGGTTAGGGATCCGAAGAAGGGGAAGGAGCCCATGGGGCACACTGCAGAATCAGGG
ACGAGGTCGAAGGGAAAGAAGATTGACAGCATGACCAGCAAGGTTAGGGGGCTCAAACCTACTGATCACCTGAGAAATCTGATCGAGGAGAAACGCAAAAGTGCCAAAAC
TGTCGAATCCGAGGCCAGAGCCGTCGAAGCTGAGGCCAGGGCAGCCGAGGCCAAGGCCAAGAAAGACAACCTCCCTTGGAAGACTGAGCTTCTAAACACACTAAATGAGC
TCGAAAATCCTCAGGGAGACCTGCAGAAGTCAAAGGACCTTGGAGATCAAAACTTGAAAGAACTAGTCGACCAAGTCGATCCGTCCTTCACAGAAGAAGTCATGAAAGGC
AAGGTGCCCCAAAAGTTTAAGGTACCCATGTTCAAACAGTACGATGGAAAGAAAGACTCTGTGCAACATCTAAACGCATACAGAAGCTTGATGGACTTCCACGGTGTCTC
AGATGCAATCAGTCAAACAGCAGTCAGGGAGAGCTTGCGTGATTACATAACGCGTTTTAATGACGAAGCACTACAGGTTGAGGGGTACAGCGAGGGAGCAACCCTGGTAG
CCATAACAGCCGAACTGGAGGACGAAAGACAGCTCAATTCAATAAGTAAGAGCCAACCTCGAACCTATTCAGAGTTTGTCTCCCGGGCACAGAAGTATATGAGCGCAGAG
GAGTTACTGAAATCAAAGGGGTCAGAACGAGAGTACAAGAGGTTTTCTTCATCTAGCTACGATAGTAAAAAGGACAAAAGACAGCGGACCGACGAGGAGGCCGAGGCCTA
G
Protein sequenceShow/hide protein sequence
MSKEMKKKNQDVNAEHSNGDCHQWRSREEGRGRPQTESPRPRSPLPSSREKQADLKFAALENKVSAMDHNLSRILRILDKPCPSTKTPDERLVRDPKKGKEPMGHTAESG
TRSKGKKIDSMTSKVRGLKPTDHLRNLIEEKRKSAKTVESEARAVEAEARAAEAKAKKDNLPWKTELLNTLNELENPQGDLQKSKDLGDQNLKELVDQVDPSFTEEVMKG
KVPQKFKVPMFKQYDGKKDSVQHLNAYRSLMDFHGVSDAISQTAVRESLRDYITRFNDEALQVEGYSEGATLVAITAELEDERQLNSISKSQPRTYSEFVSRAQKYMSAE
ELLKSKGSEREYKRFSSSSYDSKKDKRQRTDEEAEA