; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0012876 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012876
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr1:45166839..45170443
RNA-Seq ExpressionLag0012876
SyntenyLag0012876
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4394884.1 hypothetical protein G4B88_002761 [Cannabis sativa]5.1e-0933.33Show/hide
Query:  LFRRMCCSVEWAEAQALLDGVTIAMESGLTPIWMETDSKIVWNLLHDHDQHFNEIAPLIVQLKQLFHPHQIRRFLFTPRDGNKVAHSLATHARTTKRSEV
        +F   C SV+ AEA A+  G+ +A    ++  W+ +DSK++   + + D    +   L+  + Q+    Q+  FLF  R+ NKVA+SLA  +R T++SE 
Subjt:  LFRRMCCSVEWAEAQALLDGVTIAMESGLTPIWMETDSKIVWNLLHDHDQHFNEIAPLIVQLKQLFHPHQIRRFLFTPRDGNKVAHSLATHARTTKRSEV

Query:  WIEDCPPWAQGSLVHDM
        W +  P  A   L+ DM
Subjt:  WIEDCPPWAQGSLVHDM

KAG6608327.1 hypothetical protein SDJN03_01669, partial [Cucurbita argyrosperma subsp. sororia]2.9e-1250.62Show/hide
Query:  GVTIAMESGLTPIWMETDSKIVWNLLHDHDQHFNEIAPLIVQLKQLFHPHQIRRFLFTPRDGNKVAHSLATHARTTKRSEV
        G  + M +GLT +W + +SK+VW LL D DQHF EIA LI  LK L   H I+ FL TP+D  K  H+LA HA  TK  E+
Subjt:  GVTIAMESGLTPIWMETDSKIVWNLLHDHDQHFNEIAPLIVQLKQLFHPHQIRRFLFTPRDGNKVAHSLATHARTTKRSEV

XP_030940121.1 uncharacterized protein LOC115965055 [Quercus lobata]1.1e-0833.33Show/hide
Query:  EAQALLDGVTIAMESGLTPIWMETDSKIVWNLLHDHDQHFNEIAPLIVQLKQLFHPHQIRRFLFTPRDGNKVAHSLATHARTTKRSEVWIEDCPPWAQGS
        EA+A   G+  + E GL  I +E DS+ V N +  HD    +I  L+  +K      +  +  FT R+GNK AH +A HA+      +W+ED PP     
Subjt:  EAQALLDGVTIAMESGLTPIWMETDSKIVWNLLHDHDQHFNEIAPLIVQLKQLFHPHQIRRFLFTPRDGNKVAHSLATHARTTKRSEVWIEDCPPWAQGS

Query:  LVHDMTHL
        +++D++ L
Subjt:  LVHDMTHL

XP_030963869.1 uncharacterized protein LOC115985034 [Quercus lobata]5.1e-0934.26Show/hide
Query:  EAQALLDGVTIAMESGLTPIWMETDSKIVWNLLHDHDQHFNEIAPLIVQLKQLFHPHQIRRFLFTPRDGNKVAHSLATHARTTKRSEVWIEDCPPWAQGS
        EA+A   G+  + E GL  I +E DS+IV N +  HD    +I  L+  +K      +  +  FT R+GNK AH +A HA+      +W+ED PP     
Subjt:  EAQALLDGVTIAMESGLTPIWMETDSKIVWNLLHDHDQHFNEIAPLIVQLKQLFHPHQIRRFLFTPRDGNKVAHSLATHARTTKRSEVWIEDCPPWAQGS

Query:  LVHDMTHL
        +++D+  L
Subjt:  LVHDMTHL

XP_030970710.1 uncharacterized protein LOC115991106 [Quercus lobata]2.3e-0934.86Show/hide
Query:  AEAQALLDGVTIAMESGLTPIWMETDSKIVWNLLHDHDQHFNEIAPLIVQLKQLFHPHQIRRFLFTPRDGNKVAHSLATHARTTKRSEVWIEDCPPWAQG
        AEA+A   G+  + E GL  I +E D +IV N +  HD    +I  L+  +K      +  +  FT R+GNK AH  A HA+      +W+ED PP    
Subjt:  AEAQALLDGVTIAMESGLTPIWMETDSKIVWNLLHDHDQHFNEIAPLIVQLKQLFHPHQIRRFLFTPRDGNKVAHSLATHARTTKRSEVWIEDCPPWAQG

Query:  SLVHDMTHL
         +++D+T L
Subjt:  SLVHDMTHL

TrEMBL top hitse value%identityAlignment
A0A2N9HEU7 Uncharacterized protein1.0e-0733.9Show/hide
Query:  SVEWAEAQALLDGVTIAMESGLTPIWMETDSKIVWNLLHDHDQHFNEIAPLIVQLKQLFHPHQIRRFLFTPRDGNKVAHSLATHARTTKRSEVWIEDCPP
        SV   EA A    VT A+E G   I +E DS+ +   ++  D  F     +I  ++      Q  RF  T R+GNK AH+LA  A+ ++ ++VW+E  PP
Subjt:  SVEWAEAQALLDGVTIAMESGLTPIWMETDSKIVWNLLHDHDQHFNEIAPLIVQLKQLFHPHQIRRFLFTPRDGNKVAHSLATHARTTKRSEVWIEDCPP

Query:  WAQGSLVHDMTHLDDSLL
             ++ D+TH D  L+
Subjt:  WAQGSLVHDMTHLDDSLL

A0A6J1CIF1 uncharacterized protein LOC1110112374.6e-0830.63Show/hide
Query:  MATIELFRRMCCSVEWAEAQALLDGVTIAMESGLTPIWMETDSKIVWNLLHDHDQHFNEIAPLIVQLKQLFHPHQIRRFLFTPRDGNKVAHSLATHARTT
        MA+   +     SV+ AEA   ++G+ +A + G+ P+ +ETDS  ++NL     +  +E   ++++ K  +       F F  R+GNK AH LA  A   
Subjt:  MATIELFRRMCCSVEWAEAQALLDGVTIAMESGLTPIWMETDSKIVWNLLHDHDQHFNEIAPLIVQLKQLFHPHQIRRFLFTPRDGNKVAHSLATHARTT

Query:  KRSEVWIEDCP
        +   +W+ED P
Subjt:  KRSEVWIEDCP

A0A7J6HHY1 RNase H domain-containing protein2.4e-0933.33Show/hide
Query:  LFRRMCCSVEWAEAQALLDGVTIAMESGLTPIWMETDSKIVWNLLHDHDQHFNEIAPLIVQLKQLFHPHQIRRFLFTPRDGNKVAHSLATHARTTKRSEV
        +F   C SV+ AEA A+  G+ +A    ++  W+ +DSK++   + + D    +   L+  + Q+    Q+  FLF  R+ NKVA+SLA  +R T++SE 
Subjt:  LFRRMCCSVEWAEAQALLDGVTIAMESGLTPIWMETDSKIVWNLLHDHDQHFNEIAPLIVQLKQLFHPHQIRRFLFTPRDGNKVAHSLATHARTTKRSEV

Query:  WIEDCPPWAQGSLVHDM
        W +  P  A   L+ DM
Subjt:  WIEDCPPWAQGSLVHDM

A0A7J6I0M5 RNase H domain-containing protein1.3e-0730.77Show/hide
Query:  LFRRMCCSVEWAEAQALLDGVTIAMESGLTPIWMETDSKIVWNLLHDHDQHFNEIAPLIVQLKQLFHPHQIRRFLFTPRDGNKVAHSLATHARTTKRSEV
        +F   C SV+ AEA A+  G+ +A    ++  W+ +DSK++   + + D    +   L+  +  +    Q+  FLF  R+ NKVA+SLA  +  T++SE 
Subjt:  LFRRMCCSVEWAEAQALLDGVTIAMESGLTPIWMETDSKIVWNLLHDHDQHFNEIAPLIVQLKQLFHPHQIRRFLFTPRDGNKVAHSLATHARTTKRSEV

Query:  WIEDCPPWAQGSLVHDM
        W +  P  A   L+ D+
Subjt:  WIEDCPPWAQGSLVHDM

A0A803PDB4 Uncharacterized protein2.3e-0733.04Show/hide
Query:  CCSVEWAEAQALLDGVTIAMESGLTPIWMETDSKIVWNLLHDHDQHFNEIAPLIVQLKQLFHPHQIRRFLFTPRDGNKVAHSLATHARTTKRSEVWIEDC
        C +V  AEA A+L G+ +A++  ++ +W+ +DSK + + + +      +   L+  + QL    Q   FLF  R+ NKVA+SLA  +R T++ EVW +  
Subjt:  CCSVEWAEAQALLDGVTIAMESGLTPIWMETDSKIVWNLLHDHDQHFNEIAPLIVQLKQLFHPHQIRRFLFTPRDGNKVAHSLATHARTTKRSEVWIEDC

Query:  PPWAQGSLVHDM
        P  A   L+ D+
Subjt:  PPWAQGSLVHDM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.7e-0528.85Show/hide
Query:  AEAQALLDGVTIAMESGLTPIWMETDSKIVWNLLHDHDQHFNEIAPLIVQLKQLFHPHQIRRFLFTPRDGNKVAHSLATHARTTKRSEVWI-EDCPPWAQ
        AE +AL   V          I  E+D++ + NLL+  D  +  + P +  ++QL H  +  +F FTPR GNKVA  +A  + +    +  +    P W +
Subjt:  AEAQALLDGVTIAMESGLTPIWMETDSKIVWNLLHDHDQHFNEIAPLIVQLKQLFHPHQIRRFLFTPRDGNKVAHSLATHARTTKRSEVWI-EDCPPWAQ

Query:  GSLV
         +L+
Subjt:  GSLV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACTATAGAACTGTTCAGGAGAATGTGTTGTTCGGTGGAATGGGCGGAAGCTCAAGCTCTTCTAGATGGGGTAACAATAGCGATGGAATCTGGACTTACGCCTAT
CTGGATGGAGACAGATTCTAAAATAGTTTGGAATCTATTGCATGACCATGACCAACATTTCAATGAGATCGCTCCCCTCATTGTTCAGCTCAAGCAATTGTTCCATCCGC
ATCAAATCAGGAGATTCTTATTTACTCCTAGAGATGGGAATAAGGTTGCCCATAGTCTAGCCACTCATGCTCGCACAACGAAGCGTTCTGAAGTCTGGATCGAGGATTGT
CCCCCTTGGGCTCAAGGCAGCTTAGTTCATGACATGACTCATTTGGATGACTCCCTCCTCGGTTTTCTCTGGAAAATCGAAGGAGGGAGGGAAGAAGGGAGAAAAATAAA
ATCGCCGACAATGGTTGCCGACGACATGCTGAAGAAGAAAAGATCACCAACAAAACGGACCCTTAAAACTTGGACAATTCACTTCGGAAAGTATGTGAGAAGGAGCATCG
AGCCCAGCTGCTCGTATTTATCTTATGCTGACTCGGAGAATTATTCAGTAGGAACGAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCACTATAGAACTGTTCAGGAGAATGTGTTGTTCGGTGGAATGGGCGGAAGCTCAAGCTCTTCTAGATGGGGTAACAATAGCGATGGAATCTGGACTTACGCCTAT
CTGGATGGAGACAGATTCTAAAATAGTTTGGAATCTATTGCATGACCATGACCAACATTTCAATGAGATCGCTCCCCTCATTGTTCAGCTCAAGCAATTGTTCCATCCGC
ATCAAATCAGGAGATTCTTATTTACTCCTAGAGATGGGAATAAGGTTGCCCATAGTCTAGCCACTCATGCTCGCACAACGAAGCGTTCTGAAGTCTGGATCGAGGATTGT
CCCCCTTGGGCTCAAGGCAGCTTAGTTCATGACATGACTCATTTGGATGACTCCCTCCTCGGTTTTCTCTGGAAAATCGAAGGAGGGAGGGAAGAAGGGAGAAAAATAAA
ATCGCCGACAATGGTTGCCGACGACATGCTGAAGAAGAAAAGATCACCAACAAAACGGACCCTTAAAACTTGGACAATTCACTTCGGAAAGTATGTGAGAAGGAGCATCG
AGCCCAGCTGCTCGTATTTATCTTATGCTGACTCGGAGAATTATTCAGTAGGAACGAGCTAA
Protein sequenceShow/hide protein sequence
MATIELFRRMCCSVEWAEAQALLDGVTIAMESGLTPIWMETDSKIVWNLLHDHDQHFNEIAPLIVQLKQLFHPHQIRRFLFTPRDGNKVAHSLATHARTTKRSEVWIEDC
PPWAQGSLVHDMTHLDDSLLGFLWKIEGGREEGRKIKSPTMVADDMLKKKRSPTKRTLKTWTIHFGKYVRRSIEPSCSYLSYADSENYSVGTS