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Lag0012895 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012895
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr1:45431658..45434335
RNA-Seq ExpressionLag0012895
SyntenyLag0012895
Gene Ontology termsGO:0050789 - regulation of biological process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN62231.1 hypothetical protein VITISV_010992 [Vitis vinifera]2.9e-0940.48Show/hide
Query:  WNDFPKSCISNTS-PTYVNGRLRWLIQVFKGLMQMDPSAHSLFGIVADVFSLLADKGFEHGCLQGFVVGSNSIRINHLQFAKET
        W ++ + C+S+ S    VNG  +  ++ ++GL Q DP +H LF IVA+V S +  +  E   L+GF VG N  R++HLQFA +T
Subjt:  WNDFPKSCISNTS-PTYVNGRLRWLIQVFKGLMQMDPSAHSLFGIVADVFSLLADKGFEHGCLQGFVVGSNSIRINHLQFAKET

CAN65815.1 hypothetical protein VITISV_000091 [Vitis vinifera]2.2e-0941.67Show/hide
Query:  WNDFPKSCISNTS-PTYVNGRLRWLIQVFKGLMQMDPSAHSLFGIVADVFSLLADKGFEHGCLQGFVVGSNSIRINHLQFAKET
        W  + + C+S+ S    VNG  +W ++  +GL Q +P +  LF IVADV S +  K  E   L+GF VG N  R++HLQFA +T
Subjt:  WNDFPKSCISNTS-PTYVNGRLRWLIQVFKGLMQMDPSAHSLFGIVADVFSLLADKGFEHGCLQGFVVGSNSIRINHLQFAKET

RVW19681.1 putative mitochondrial protein [Vitis vinifera]3.8e-0942.53Show/hide
Query:  GLVWNDFPKSCISNTS-PTYVNGRLRWLIQVFKGLMQMDPSAHSLFGIVADVFSLLADKGFEHGCLQGFVVGSNSIRINHLQFAKET
        GL W  + + C+S+ S    VNG ++  ++  +GL Q DP +  LF IVADV S +  K  E   L+GF VG N  R++HLQFA +T
Subjt:  GLVWNDFPKSCISNTS-PTYVNGRLRWLIQVFKGLMQMDPSAHSLFGIVADVFSLLADKGFEHGCLQGFVVGSNSIRINHLQFAKET

RVW53508.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]9.9e-1045.24Show/hide
Query:  WNDFPKSCISNTS-PTYVNGRLRWLIQVFKGLMQMDPSAHSLFGIVADVFSLLADKGFEHGCLQGFVVGSNSIRINHLQFAKET
        W  + + C+S+ S    VNG  +  ++  KGL Q DP +H LF IVADV S +  K  E   L+GF VG N IR++HLQFA +T
Subjt:  WNDFPKSCISNTS-PTYVNGRLRWLIQVFKGLMQMDPSAHSLFGIVADVFSLLADKGFEHGCLQGFVVGSNSIRINHLQFAKET

RVX19788.1 putative ribonuclease H protein [Vitis vinifera]2.9e-0940.48Show/hide
Query:  WNDFPKSCISNTS-PTYVNGRLRWLIQVFKGLMQMDPSAHSLFGIVADVFSLLADKGFEHGCLQGFVVGSNSIRINHLQFAKET
        W ++ + C+S+ S    VNG  +  ++ ++GL Q DP +H LF IVA+V S +  +  E   L+GF VG N  R++HLQFA +T
Subjt:  WNDFPKSCISNTS-PTYVNGRLRWLIQVFKGLMQMDPSAHSLFGIVADVFSLLADKGFEHGCLQGFVVGSNSIRINHLQFAKET

TrEMBL top hitse value%identityAlignment
A0A438F0I1 Transposon TX1 uncharacterized 149 kDa protein4.8e-1045.24Show/hide
Query:  WNDFPKSCISNTS-PTYVNGRLRWLIQVFKGLMQMDPSAHSLFGIVADVFSLLADKGFEHGCLQGFVVGSNSIRINHLQFAKET
        W  + + C+S+ S    VNG  +  ++  KGL Q DP +H LF IVADV S +  K  E   L+GF VG N IR++HLQFA +T
Subjt:  WNDFPKSCISNTS-PTYVNGRLRWLIQVFKGLMQMDPSAHSLFGIVADVFSLLADKGFEHGCLQGFVVGSNSIRINHLQFAKET

A0A803P8A0 Uncharacterized protein1.1e-0941.67Show/hide
Query:  WNDFPKSCISNTS-PTYVNGRLRWLIQVFKGLMQMDPSAHSLFGIVADVFSLLADKGFEHGCLQGFVVGSNSIRINHLQFAKET
        W  + + C+S+TS   +VNGR+R      +GL Q DP +  LF +VADV   + DK  E     GF +G ++IR++HLQFA +T
Subjt:  WNDFPKSCISNTS-PTYVNGRLRWLIQVFKGLMQMDPSAHSLFGIVADVFSLLADKGFEHGCLQGFVVGSNSIRINHLQFAKET

A0A803PZR9 Uncharacterized protein8.2e-1042.35Show/hide
Query:  GLVWNDFPKSCISNTS-PTYVNGRLRWLIQVFKGLMQMDPSAHSLFGIVADVFSLLADKGFEHGCLQGFVVGSNSIRINHLQFAK
        G  W  + + C+S TS   +VNGR R   +  +GL Q DP +  LF +VAD+   + DK    G L GF VG + I+I+HLQF K
Subjt:  GLVWNDFPKSCISNTS-PTYVNGRLRWLIQVFKGLMQMDPSAHSLFGIVADVFSLLADKGFEHGCLQGFVVGSNSIRINHLQFAK

A5BLZ9 Reverse transcriptase domain-containing protein1.1e-0941.67Show/hide
Query:  WNDFPKSCISNTS-PTYVNGRLRWLIQVFKGLMQMDPSAHSLFGIVADVFSLLADKGFEHGCLQGFVVGSNSIRINHLQFAKET
        W  + + C+S+ S    VNG  +W ++  +GL Q +P +  LF IVADV S +  K  E   L+GF VG N  R++HLQFA +T
Subjt:  WNDFPKSCISNTS-PTYVNGRLRWLIQVFKGLMQMDPSAHSLFGIVADVFSLLADKGFEHGCLQGFVVGSNSIRINHLQFAKET

A5C9R9 Reverse transcriptase domain-containing protein1.4e-0940.48Show/hide
Query:  WNDFPKSCISNTS-PTYVNGRLRWLIQVFKGLMQMDPSAHSLFGIVADVFSLLADKGFEHGCLQGFVVGSNSIRINHLQFAKET
        W ++ + C+S+ S    VNG  +  ++ ++GL Q DP +H LF IVA+V S +  +  E   L+GF VG N  R++HLQFA +T
Subjt:  WNDFPKSCISNTS-PTYVNGRLRWLIQVFKGLMQMDPSAHSLFGIVADVFSLLADKGFEHGCLQGFVVGSNSIRINHLQFAKET

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCCTGGTCAGGAGATATCTTGCACTTAGCACGGAAAGGAATACAATTAGAGAGGGTGGAGAGAAATCTCATGAGAAGTATTTAAAGCTCAAGACATCTCATCCTAC
CATGGAGCCATGCGGTAGGCCAAGAGGCATTCTGATAACTCAAGACGAGTTTGAATATCAAGTTCAAGTAGTAGTGGCTGATGCCACCACTCATATGGAAAATATACAGC
CTAGGTCTGACTGGAGACGGTCATCCTCGTCACCTCTTTTCCCAAAGAATTTTTGCATGCAGCCTCAGGAACAGACAATGTTTACCTTCAAAGTTCAACCTATCTCTGGG
CTTGTTTGGAATGACTTTCCAAAAAGCTGCATATCTAATACTTCTCCCACTTATGTGAATGGCAGGCTGAGATGGCTCATTCAGGTTTTTAAAGGTCTTATGCAAATGGA
CCCCTCGGCCCACTCCCTTTTTGGCATTGTTGCTGATGTGTTTAGCTTGCTAGCAGATAAAGGCTTTGAGCATGGCTGCCTTCAAGGTTTTGTTGTGGGTAGTAATTCCA
TTCGCATAAACCACCTTCAATTTGCTAAAGAAACTAAAGCTAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCCTGGTCAGGAGATATCTTGCACTTAGCACGGAAAGGAATACAATTAGAGAGGGTGGAGAGAAATCTCATGAGAAGTATTTAAAGCTCAAGACATCTCATCCTAC
CATGGAGCCATGCGGTAGGCCAAGAGGCATTCTGATAACTCAAGACGAGTTTGAATATCAAGTTCAAGTAGTAGTGGCTGATGCCACCACTCATATGGAAAATATACAGC
CTAGGTCTGACTGGAGACGGTCATCCTCGTCACCTCTTTTCCCAAAGAATTTTTGCATGCAGCCTCAGGAACAGACAATGTTTACCTTCAAAGTTCAACCTATCTCTGGG
CTTGTTTGGAATGACTTTCCAAAAAGCTGCATATCTAATACTTCTCCCACTTATGTGAATGGCAGGCTGAGATGGCTCATTCAGGTTTTTAAAGGTCTTATGCAAATGGA
CCCCTCGGCCCACTCCCTTTTTGGCATTGTTGCTGATGTGTTTAGCTTGCTAGCAGATAAAGGCTTTGAGCATGGCTGCCTTCAAGGTTTTGTTGTGGGTAGTAATTCCA
TTCGCATAAACCACCTTCAATTTGCTAAAGAAACTAAAGCTAAATAA
Protein sequenceShow/hide protein sequence
MALVRRYLALSTERNTIREGGEKSHEKYLKLKTSHPTMEPCGRPRGILITQDEFEYQVQVVVADATTHMENIQPRSDWRRSSSSPLFPKNFCMQPQEQTMFTFKVQPISG
LVWNDFPKSCISNTSPTYVNGRLRWLIQVFKGLMQMDPSAHSLFGIVADVFSLLADKGFEHGCLQGFVVGSNSIRINHLQFAKETKAK