; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0012902 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012902
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr1:45514598..45515020
RNA-Seq ExpressionLag0012902
SyntenyLag0012902
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7814603.1 reverse transcriptase [Senna tora]8.6e-0837.96Show/hide
Query:  NLSWKSPPKGFWKLNTDASCASLPFSTGLEFINRGAAG------ISLDIEYSAPIAELMAIAEGACLAAELGCERLIVESDCLTLI-LKNIKYLGEVE--
        ++ W++PP G+WKLNTD SC       G   + R + G      I    E ++ +AEL AI EG  LA  LGC R+IVE+D    + L N K  G +   
Subjt:  NLSWKSPPKGFWKLNTDASCASLPFSTGLEFINRGAAG------ISLDIEYSAPIAELMAIAEGACLAAELGCERLIVESDCLTLI-LKNIKYLGEVE--

Query:  AILNRIWALSSSSFREIKFQYMLRSCNDIADYIAKRA
        A L  +   S   F E K  +  R  N  AD +AKRA
Subjt:  AILNRIWALSSSSFREIKFQYMLRSCNDIADYIAKRA

KAF7842623.1 putative ribonuclease H protein At1g65750 family [Senna tora]1.1e-0737.86Show/hide
Query:  LSWKSPPKGFWKLNTDASCASLPFSTGLEFINRGAAG--ISLDIEY----SAPIAELMAIAEGACLAAELGCERLIVESDCL---TLILKNIKYLGEVEA
        +SW+ P +GFWKLNTD S    P   G+  I R   G  +    EY    S   AEL+AI +G  L+ +LG  RL VESDCL    LI +++    ++  
Subjt:  LSWKSPPKGFWKLNTDASCASLPFSTGLEFINRGAAG--ISLDIEY----SAPIAELMAIAEGACLAAELGCERLIVESDCL---TLILKNIKYLGEVEA

Query:  ILNRIWALSSSSFREIKFQYMLRSCNDIADYIAK-RAKNA
        IL  I  L    F  I   ++ R  N  AD +A+  +KNA
Subjt:  ILNRIWALSSSSFREIKFQYMLRSCNDIADYIAK-RAKNA

XP_023889265.1 uncharacterized protein LOC112001321 [Quercus suber]5.9e-0938.69Show/hide
Query:  SWKSPPKGFWKLNTD-ASCASLPFSTGLEFIN-RGA--AGIS--LDIEYSAPIAELMAIAEGACLAAELGCERLIVESDCLTLI--LKNIKYLGEVEAIL
        +W++PP GF+K+NTD A+    P  TG+   + RG   A +S  L   YSA I E +A+ +G  LA ELG   +IVESD L++I  +    + GE+  I+
Subjt:  SWKSPPKGFWKLNTD-ASCASLPFSTGLEFIN-RGA--AGIS--LDIEYSAPIAELMAIAEGACLAAELGCERLIVESDCLTLI--LKNIKYLGEVEAIL

Query:  NRIWALSSSSFREIKFQYMLRSCNDIADYIAKRAKNA
          I  + SSSF    FQ+++RS N  A  +A+ A+++
Subjt:  NRIWALSSSSFREIKFQYMLRSCNDIADYIAKRAKNA

XP_023901742.1 uncharacterized protein LOC112013579 [Quercus suber]1.5e-0732.12Show/hide
Query:  WKSPPKGFWKLNTDASCASLPFSTGLEFINRGAAGI-------SLDIEYSAPIAELMAIAEGACLAAELGCERLIVESDCLTLI--LKNIKYLGEVEAIL
        WK+PP G++K+NTDA+       + +  + R   G+        L   + A I+E +A+ EG  LAAE+     I ESD L++I  +    + GE   I+
Subjt:  WKSPPKGFWKLNTDASCASLPFSTGLEFINRGAAGI-------SLDIEYSAPIAELMAIAEGACLAAELGCERLIVESDCLTLI--LKNIKYLGEVEAIL

Query:  NRIWALSSSSFREIKFQYMLRSCNDIADYIAKRAKNA
          IW + ++SF    F+++ R  N +A  +A+ AKN+
Subjt:  NRIWALSSSSFREIKFQYMLRSCNDIADYIAKRAKNA

XP_038902513.1 uncharacterized protein LOC120089172 [Benincasa hispida]7.0e-1034.69Show/hide
Query:  SNRHS--SNLSWKSPPKGFWKLNTDASCASLPFSTGLEFI---NRGAAGI----SLDIEYSAPIAELMAIAEGACLAAELGCERLIVESDC---LTLILK
        SN+ S  S+ +W +PP  F KLN DA+    P+S+G   I   N+G+  +    S+D  Y  P+AE   + +G  L +++  +++IV+SDC   + L LK
Subjt:  SNRHS--SNLSWKSPPKGFWKLNTDASCASLPFSTGLEFI---NRGAAGI----SLDIEYSAPIAELMAIAEGACLAAELGCERLIVESDC---LTLILK

Query:  NIKYLGEVEAILNRIWALSSSSFREIKFQYMLRSCNDIADYIAKRAK
         +     V   L  IW + S  F  I F Y+ R+ N +AD +AKR +
Subjt:  NIKYLGEVEAILNRIWALSSSSFREIKFQYMLRSCNDIADYIAKRAK

TrEMBL top hitse value%identityAlignment
A0A5B7A5D5 RNase H domain-containing protein (Fragment)1.1e-0534.27Show/hide
Query:  SNRHSSNLSWKSPPKGFWKLNTDASCASLPFSTGLEFINRGAAGISLDIEY------SAPIAELMAIAEGACLAAELGCERLIVESDCLTLI--LKNIKY
        S R ++ + W  PP GFWKLNTD S    P   G   I R  +G      +      S+ +AEL AI EG  L  E     +IVESDC T +  L++I  
Subjt:  SNRHSSNLSWKSPPKGFWKLNTDASCASLPFSTGLEFINRGAAGISLDIEY------SAPIAELMAIAEGACLAAELGCERLIVESDCLTLI--LKNIKY

Query:  LGEVEAILNRIWALSSSSFREIKFQYMLRSCNDIADYIAKRAK
           V A L       +S      F + LR  N  AD +A + +
Subjt:  LGEVEAILNRIWALSSSSFREIKFQYMLRSCNDIADYIAKRAK

A0A6P5RZ31 uncharacterized protein LOC1107515794.6e-0733.09Show/hide
Query:  SNLSWKSPPKGFWKLNTDASCASLPFSTGLEFINR-------GAAGISLDIEYSAPIAELMAIAEGACLAAELGCERLIVESD---CLTLILKNIKYLGE
        S+  W  PP G  KLN D +C++  +  GL  + R       GA  + +   +SA + EL+AI EG     E G + L+VE+D    +  I+   +  G 
Subjt:  SNLSWKSPPKGFWKLNTDASCASLPFSTGLEFINR-------GAAGISLDIEYSAPIAELMAIAEGACLAAELGCERLIVESD---CLTLILKNIKYLGE

Query:  VEAILNRIWALSSSSFREIKFQYMLRSCNDIADYIAKRA
           I+N I  L S +F  + F +  R CN +AD +AK A
Subjt:  VEAILNRIWALSSSSFREIKFQYMLRSCNDIADYIAKRA

A0A7N2KZZ0 RNase H domain-containing protein1.9e-0533.33Show/hide
Query:  WKSPPKGFWKLNTDASCASLPFSTGLEFINRGAAGI-------SLDIEYSAPIAELMAIAEGACLAAELGCERLIVESDCLTLILKNIKYLGEVEAILNR
        WK PP G  K+N D +  S   S GL  + R  AG+        + +  S  I E++A      LA ELG ER++VE D   +I+K IK      + L  
Subjt:  WKSPPKGFWKLNTDASCASLPFSTGLEFINRGAAGI-------SLDIEYSAPIAELMAIAEGACLAAELGCERLIVESDCLTLILKNIKYLGEVEAILNR

Query:  IW---ALSSSSFREIKFQYMLRSCNDIADYIAKRA
        I     + S SF  I F ++ R  N +A ++A R+
Subjt:  IW---ALSSSSFREIKFQYMLRSCNDIADYIAKRA

B8BNV4 Reverse transcriptase domain-containing protein6.6e-0629.63Show/hide
Query:  WKSPPKGFWKLNTDASCASLPFSTGLEFINRGAAGISLDIEYS-------APIAELMAIAEGACLAAELGCERLIVESDCLTL--ILKNIKYLGEVEAIL
        WK PP+G   +N DA    +     +  + R  +G  L   +S       AP+AE  A+ EG  LA ++GC RLI++SDC+ +  I+ +  +     A +
Subjt:  WKSPPKGFWKLNTDASCASLPFSTGLEFINRGAAGISLDIEYS-------APIAELMAIAEGACLAAELGCERLIVESDCLTL--ILKNIKYLGEVEAIL

Query:  NRIWALSSSSFREIKFQYMLRSCNDIADYIAKRAK
             +  S F +I  ++  R  N +A  +A+RA+
Subjt:  NRIWALSSSSFREIKFQYMLRSCNDIADYIAKRAK

B9GBH0 Uncharacterized protein6.6e-0629.63Show/hide
Query:  WKSPPKGFWKLNTDASCASLPFSTGLEFINRGAAGISLDIEYS-------APIAELMAIAEGACLAAELGCERLIVESDCLTL--ILKNIKYLGEVEAIL
        WK PP+G   +N DA    +     +  + R  +G  L   +S       AP+AE  A+ EG  LA ++GC RLI++SDC+ +  I+ +  +     A +
Subjt:  WKSPPKGFWKLNTDASCASLPFSTGLEFINRGAAGISLDIEYS-------APIAELMAIAEGACLAAELGCERLIVESDCLTL--ILKNIKYLGEVEAIL

Query:  NRIWALSSSSFREIKFQYMLRSCNDIADYIAKRAK
             +  S F +I  ++  R  N +A  +A+RA+
Subjt:  NRIWALSSSSFREIKFQYMLRSCNDIADYIAKRAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCGATCAAATCGTCATTCATCGAATTTGAGCTGGAAGTCTCCCCCTAAAGGTTTTTGGAAACTGAACACAGATGCTTCTTGTGCTTCACTCCCCTTTTCGACAGG
GCTCGAATTTATAAATCGCGGAGCTGCGGGAATTTCCTTAGATATTGAATATTCAGCTCCTATTGCTGAGTTGATGGCAATAGCTGAGGGAGCATGTCTGGCAGCTGAGT
TGGGTTGTGAAAGATTAATAGTGGAGTCTGATTGTTTGACTTTGATCCTAAAGAATATAAAATATTTGGGTGAAGTGGAAGCTATTTTAAACCGTATCTGGGCCTTATCA
TCATCATCATTCAGAGAAATTAAGTTTCAATATATGTTGAGATCTTGTAATGATATTGCAGATTATATTGCTAAGAGAGCTAAAAATGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATCGATCAAATCGTCATTCATCGAATTTGAGCTGGAAGTCTCCCCCTAAAGGTTTTTGGAAACTGAACACAGATGCTTCTTGTGCTTCACTCCCCTTTTCGACAGG
GCTCGAATTTATAAATCGCGGAGCTGCGGGAATTTCCTTAGATATTGAATATTCAGCTCCTATTGCTGAGTTGATGGCAATAGCTGAGGGAGCATGTCTGGCAGCTGAGT
TGGGTTGTGAAAGATTAATAGTGGAGTCTGATTGTTTGACTTTGATCCTAAAGAATATAAAATATTTGGGTGAAGTGGAAGCTATTTTAAACCGTATCTGGGCCTTATCA
TCATCATCATTCAGAGAAATTAAGTTTCAATATATGTTGAGATCTTGTAATGATATTGCAGATTATATTGCTAAGAGAGCTAAAAATGCTTAA
Protein sequenceShow/hide protein sequence
MNRSNRHSSNLSWKSPPKGFWKLNTDASCASLPFSTGLEFINRGAAGISLDIEYSAPIAELMAIAEGACLAAELGCERLIVESDCLTLILKNIKYLGEVEAILNRIWALS
SSSFREIKFQYMLRSCNDIADYIAKRAKNA