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Lag0012931 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012931
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase, RNA-dependent DNA polymerase
Genome locationchr1:45872942..45873481
RNA-Seq ExpressionLag0012931
SyntenyLag0012931
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067279.1 uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa]2.8e-4355.56Show/hide
Query:  NPARLSVASIGTTNFNNPPLNQLLKQITSIKLDRDNFLLWKNLTLPILRSNKLEGHLSGEKPCPPKYVRATTEGQNVGLTPGEGASSSEAVVSGASTSTA
        N A +SV +  TT+F NP LNQ+L Q+T+IKLDR N+LLWK L LPIL+S KL  HL GE PC PK +  TT+  N  +    G  S E     +S+STA
Subjt:  NPARLSVASIGTTNFNNPPLNQLLKQITSIKLDRDNFLLWKNLTLPILRSNKLEGHLSGEKPCPPKYVRATTEGQNVGLTPGEGASSSEAVVSGASTSTA

Query:  TATINPQYESWIAIDQLLLGWLYNSMTPEVATQVMGFENSQEFWAAVQDLFGIQSQAKEDYLCLVFRQSRK
          T+NP+YE WI  D LLLGWLYNSMTPEV  Q+MGF N+++ W A QDLFGIQS+AKED+L   F+ ++K
Subjt:  TATINPQYESWIAIDQLLLGWLYNSMTPEVATQVMGFENSQEFWAAVQDLFGIQSQAKEDYLCLVFRQSRK

XP_016900937.1 PREDICTED: uncharacterized protein LOC107991116 [Cucumis melo]1.2e-4355.17Show/hide
Query:  NPARLSVASIGTTNFNNPPLNQLLKQITSIKLDRDNFLLWKNLTLPILRSNKLEGHLSGEKPCPPKYVRATTEGQNVGLTPGEGASSSEAVVSGASTSTA
        N A +SV +  TT+F NP LNQ+L Q+T+IKLDR N+LLWK L LPIL+S KL  HL GE PC PK +  TT+  N  +    G  S E     +S+STA
Subjt:  NPARLSVASIGTTNFNNPPLNQLLKQITSIKLDRDNFLLWKNLTLPILRSNKLEGHLSGEKPCPPKYVRATTEGQNVGLTPGEGASSSEAVVSGASTSTA

Query:  TATINPQYESWIAIDQLLLGWLYNSMTPEVATQVMGFENSQEFWAAVQDLFGIQSQAKEDYLCLVFRQSRKEVL
          T+NP+YE WI  D LLLGWLYNSMTPEV  Q+MGF N+++ W A QDLFGIQS+AKED+L   F+ ++K V+
Subjt:  TATINPQYESWIAIDQLLLGWLYNSMTPEVATQVMGFENSQEFWAAVQDLFGIQSQAKEDYLCLVFRQSRKEVL

XP_016902203.1 PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo]2.1e-3849.71Show/hide
Query:  MANVNPARLSVASIGTTNFNNPPLNQLLKQITSIKLDRDNFLLWKNLTLPILRSNKLEGHLSGEKPCPPKYVRATTEGQNVGLTPGEGASSSEAVVSGAS
        MAN  P   +  S+ +  F+NPPLNQ+L Q+T++KLDR N+LLWK L LPIL+  KLEGHL+ E PCP  +V  +    N  +T  EGA ++     GAS
Subjt:  MANVNPARLSVASIGTTNFNNPPLNQLLKQITSIKLDRDNFLLWKNLTLPILRSNKLEGHLSGEKPCPPKYVRATTEGQNVGLTPGEGASSSEAVVSGAS

Query:  TSTATATINPQYESWIAIDQLLLGWLYNSMTPEVATQVMGFENSQEFWAAVQDLFGIQSQAKEDYLCLVFRQSRK
        +S     +NP +E W+  D LLLGWLYNSMTP+VA Q+MGF N ++ W A QD FG+QS+A+ED+L  + + +RK
Subjt:  TSTATATINPQYESWIAIDQLLLGWLYNSMTPEVATQVMGFENSQEFWAAVQDLFGIQSQAKEDYLCLVFRQSRK

XP_022151683.1 uncharacterized protein LOC111019598 [Momordica charantia]1.4e-3954.78Show/hide
Query:  FNNPPLNQLLKQITSIKLDRDNFLLWKNLTLPILRSNKLEGHLSGEKPCPPKYVRATTEGQNVGLTPGEGASSSEAVVSGASTSTATATINPQYESWIAI
        F +PPLNQLL QITSIK+DR NFLLW+NL LPILRS KL  +L+G+KPCPP ++  T    N               + G+++S ++ T+NP YE+WI +
Subjt:  FNNPPLNQLLKQITSIKLDRDNFLLWKNLTLPILRSNKLEGHLSGEKPCPPKYVRATTEGQNVGLTPGEGASSSEAVVSGASTSTATATINPQYESWIAI

Query:  DQLLLGWLYNSMTPEVATQVMGFENSQEFWAAVQDLFGIQSQAKEDYLCLVFRQSRK
        D+LLLGWLYNSM  +VA QVMGF  S+E W AVQ+LFG+QS+A+ DYL  VF+Q+ K
Subjt:  DQLLLGWLYNSMTPEVATQVMGFENSQEFWAAVQDLFGIQSQAKEDYLCLVFRQSRK

XP_031745012.1 uncharacterized protein LOC116405217 [Cucumis sativus]2.4e-3949.7Show/hide
Query:  LSVASIGTTNFNNPPLNQLLKQITSIKLDRDNFLLWKNLTLPILRSNKLEGHLSGEKPCPPKYVRATTEGQNVGLTPGEGASSSEAVVSGASTSTATATI
        +S+    TTNF+NPPLNQ+L Q+ S+KLDR N+LLW+ L LPIL+S KL+GHL+ E  CPPK++          + P  GAS         S ST T T+
Subjt:  LSVASIGTTNFNNPPLNQLLKQITSIKLDRDNFLLWKNLTLPILRSNKLEGHLSGEKPCPPKYVRATTEGQNVGLTPGEGASSSEAVVSGASTSTATATI

Query:  NPQYESWIAIDQLLLGWLYNSMTPEVATQVMGFENSQEFWAAVQDLFGIQSQAKEDYLCLVFRQSRK
        NP+++ W+  D LLLGW+YNSMTPEVA Q+MGF  +++ W A+QDLFG+Q +A+ED+L   F+ ++K
Subjt:  NPQYESWIAIDQLLLGWLYNSMTPEVATQVMGFENSQEFWAAVQDLFGIQSQAKEDYLCLVFRQSRK

TrEMBL top hitse value%identityAlignment
A0A1S4DY80 uncharacterized protein LOC1079911166.0e-4455.17Show/hide
Query:  NPARLSVASIGTTNFNNPPLNQLLKQITSIKLDRDNFLLWKNLTLPILRSNKLEGHLSGEKPCPPKYVRATTEGQNVGLTPGEGASSSEAVVSGASTSTA
        N A +SV +  TT+F NP LNQ+L Q+T+IKLDR N+LLWK L LPIL+S KL  HL GE PC PK +  TT+  N  +    G  S E     +S+STA
Subjt:  NPARLSVASIGTTNFNNPPLNQLLKQITSIKLDRDNFLLWKNLTLPILRSNKLEGHLSGEKPCPPKYVRATTEGQNVGLTPGEGASSSEAVVSGASTSTA

Query:  TATINPQYESWIAIDQLLLGWLYNSMTPEVATQVMGFENSQEFWAAVQDLFGIQSQAKEDYLCLVFRQSRKEVL
          T+NP+YE WI  D LLLGWLYNSMTPEV  Q+MGF N+++ W A QDLFGIQS+AKED+L   F+ ++K V+
Subjt:  TATINPQYESWIAIDQLLLGWLYNSMTPEVATQVMGFENSQEFWAAVQDLFGIQSQAKEDYLCLVFRQSRKEVL

A0A1S4E1U6 uncharacterized protein LOC107991581 isoform X19.9e-3949.71Show/hide
Query:  MANVNPARLSVASIGTTNFNNPPLNQLLKQITSIKLDRDNFLLWKNLTLPILRSNKLEGHLSGEKPCPPKYVRATTEGQNVGLTPGEGASSSEAVVSGAS
        MAN  P   +  S+ +  F+NPPLNQ+L Q+T++KLDR N+LLWK L LPIL+  KLEGHL+ E PCP  +V  +    N  +T  EGA ++     GAS
Subjt:  MANVNPARLSVASIGTTNFNNPPLNQLLKQITSIKLDRDNFLLWKNLTLPILRSNKLEGHLSGEKPCPPKYVRATTEGQNVGLTPGEGASSSEAVVSGAS

Query:  TSTATATINPQYESWIAIDQLLLGWLYNSMTPEVATQVMGFENSQEFWAAVQDLFGIQSQAKEDYLCLVFRQSRK
        +S     +NP +E W+  D LLLGWLYNSMTP+VA Q+MGF N ++ W A QD FG+QS+A+ED+L  + + +RK
Subjt:  TSTATATINPQYESWIAIDQLLLGWLYNSMTPEVATQVMGFENSQEFWAAVQDLFGIQSQAKEDYLCLVFRQSRK

A0A1S4E1U9 uncharacterized protein LOC107991581 isoform X49.9e-3949.71Show/hide
Query:  MANVNPARLSVASIGTTNFNNPPLNQLLKQITSIKLDRDNFLLWKNLTLPILRSNKLEGHLSGEKPCPPKYVRATTEGQNVGLTPGEGASSSEAVVSGAS
        MAN  P   +  S+ +  F+NPPLNQ+L Q+T++KLDR N+LLWK L LPIL+  KLEGHL+ E PCP  +V  +    N  +T  EGA ++     GAS
Subjt:  MANVNPARLSVASIGTTNFNNPPLNQLLKQITSIKLDRDNFLLWKNLTLPILRSNKLEGHLSGEKPCPPKYVRATTEGQNVGLTPGEGASSSEAVVSGAS

Query:  TSTATATINPQYESWIAIDQLLLGWLYNSMTPEVATQVMGFENSQEFWAAVQDLFGIQSQAKEDYLCLVFRQSRK
        +S     +NP +E W+  D LLLGWLYNSMTP+VA Q+MGF N ++ W A QD FG+QS+A+ED+L  + + +RK
Subjt:  TSTATATINPQYESWIAIDQLLLGWLYNSMTPEVATQVMGFENSQEFWAAVQDLFGIQSQAKEDYLCLVFRQSRK

A0A5A7VPY0 Uncharacterized protein1.3e-4355.56Show/hide
Query:  NPARLSVASIGTTNFNNPPLNQLLKQITSIKLDRDNFLLWKNLTLPILRSNKLEGHLSGEKPCPPKYVRATTEGQNVGLTPGEGASSSEAVVSGASTSTA
        N A +SV +  TT+F NP LNQ+L Q+T+IKLDR N+LLWK L LPIL+S KL  HL GE PC PK +  TT+  N  +    G  S E     +S+STA
Subjt:  NPARLSVASIGTTNFNNPPLNQLLKQITSIKLDRDNFLLWKNLTLPILRSNKLEGHLSGEKPCPPKYVRATTEGQNVGLTPGEGASSSEAVVSGASTSTA

Query:  TATINPQYESWIAIDQLLLGWLYNSMTPEVATQVMGFENSQEFWAAVQDLFGIQSQAKEDYLCLVFRQSRK
          T+NP+YE WI  D LLLGWLYNSMTPEV  Q+MGF N+++ W A QDLFGIQS+AKED+L   F+ ++K
Subjt:  TATINPQYESWIAIDQLLLGWLYNSMTPEVATQVMGFENSQEFWAAVQDLFGIQSQAKEDYLCLVFRQSRK

A0A6J1DCW4 uncharacterized protein LOC1110195986.9e-4054.78Show/hide
Query:  FNNPPLNQLLKQITSIKLDRDNFLLWKNLTLPILRSNKLEGHLSGEKPCPPKYVRATTEGQNVGLTPGEGASSSEAVVSGASTSTATATINPQYESWIAI
        F +PPLNQLL QITSIK+DR NFLLW+NL LPILRS KL  +L+G+KPCPP ++  T    N               + G+++S ++ T+NP YE+WI +
Subjt:  FNNPPLNQLLKQITSIKLDRDNFLLWKNLTLPILRSNKLEGHLSGEKPCPPKYVRATTEGQNVGLTPGEGASSSEAVVSGASTSTATATINPQYESWIAI

Query:  DQLLLGWLYNSMTPEVATQVMGFENSQEFWAAVQDLFGIQSQAKEDYLCLVFRQSRK
        D+LLLGWLYNSM  +VA QVMGF  S+E W AVQ+LFG+QS+A+ DYL  VF+Q+ K
Subjt:  DQLLLGWLYNSMTPEVATQVMGFENSQEFWAAVQDLFGIQSQAKEDYLCLVFRQSRK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAACGTCAACCCCGCTAGACTTTCTGTTGCATCCATCGGAACCACAAACTTCAACAATCCTCCTCTAAATCAGCTGCTAAAACAGATTACATCAATCAAGCTAGA
CAGAGACAACTTTCTGCTCTGGAAAAACCTAACACTACCAATCCTTCGAAGCAACAAATTGGAAGGACATTTATCTGGTGAAAAACCATGCCCTCCAAAGTATGTTCGAG
CAACAACCGAGGGTCAGAATGTTGGCTTAACCCCAGGGGAAGGAGCATCTAGCTCAGAGGCAGTTGTGAGTGGAGCGTCTACTTCAACTGCAACGGCGACCATAAATCCC
CAATATGAATCTTGGATTGCGATCGATCAGCTACTGCTTGGGTGGCTGTATAACTCGATGACACCTGAAGTTGCAACGCAAGTGATGGGCTTCGAGAACTCTCAAGAGTT
CTGGGCAGCTGTGCAAGATCTTTTTGGCATTCAGTCGCAGGCTAAGGAAGACTATCTTTGCCTAGTCTTTCGACAATCTCGAAAAGAGGTATTGCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAACGTCAACCCCGCTAGACTTTCTGTTGCATCCATCGGAACCACAAACTTCAACAATCCTCCTCTAAATCAGCTGCTAAAACAGATTACATCAATCAAGCTAGA
CAGAGACAACTTTCTGCTCTGGAAAAACCTAACACTACCAATCCTTCGAAGCAACAAATTGGAAGGACATTTATCTGGTGAAAAACCATGCCCTCCAAAGTATGTTCGAG
CAACAACCGAGGGTCAGAATGTTGGCTTAACCCCAGGGGAAGGAGCATCTAGCTCAGAGGCAGTTGTGAGTGGAGCGTCTACTTCAACTGCAACGGCGACCATAAATCCC
CAATATGAATCTTGGATTGCGATCGATCAGCTACTGCTTGGGTGGCTGTATAACTCGATGACACCTGAAGTTGCAACGCAAGTGATGGGCTTCGAGAACTCTCAAGAGTT
CTGGGCAGCTGTGCAAGATCTTTTTGGCATTCAGTCGCAGGCTAAGGAAGACTATCTTTGCCTAGTCTTTCGACAATCTCGAAAAGAGGTATTGCATTGA
Protein sequenceShow/hide protein sequence
MANVNPARLSVASIGTTNFNNPPLNQLLKQITSIKLDRDNFLLWKNLTLPILRSNKLEGHLSGEKPCPPKYVRATTEGQNVGLTPGEGASSSEAVVSGASTSTATATINP
QYESWIAIDQLLLGWLYNSMTPEVATQVMGFENSQEFWAAVQDLFGIQSQAKEDYLCLVFRQSRKEVLH