; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0012943 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012943
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr1:45983040..45986230
RNA-Seq ExpressionLag0012943
SyntenyLag0012943
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-2164.29Show/hide
Query:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKFLP
        +SMA  EEENQC MST  R  AF+RLS+STSKK R STS FDRLK+TNDQ +R+M + + K F E N D+K+HS +PSRMKRK SV INTEGSL   P
Subjt:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKFLP

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.5e-2164.29Show/hide
Query:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKFLP
        +SMA  EEENQC  ST  R  AF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D+K+HS +PSRMKRK SV INTEGSL   P
Subjt:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKFLP

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]2.5e-2164.29Show/hide
Query:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKFLP
        +SMA  EEENQC  ST  R  AF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D+K+HS +PSRMKRK SV INTEGSL   P
Subjt:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKFLP

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-2062.24Show/hide
Query:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKFLP
        +SMA  EEENQC MST TR  AF+RLS+S SKK R STS FDRLK+TNDQ +R+M +L+ K F E N D+K++S +PSR+KRK S+ INTEGSL   P
Subjt:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKFLP

TYK02147.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.2e-2164.65Show/hide
Query:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLF-DEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKFLP
        +SMA  EEENQC  S STR  AF+RLS+STSKK R STS FDRLK+TNDQ +R+M  L+ KLF +E N D+K+H+ IPSRMKRK SV I+TEGSL   P
Subjt:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLF-DEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKFLP

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein7.0e-2264.29Show/hide
Query:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKFLP
        +SMA  EEENQC MST  R  AF+RLS+STSKK R STS FDRLK+TNDQ +R+M + + K F E N D+K+HS +PSRMKRK SV INTEGSL   P
Subjt:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKFLP

A0A5A7TQ06 Retrotransposon gag protein1.2e-2164.29Show/hide
Query:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKFLP
        +SMA  EEENQC  ST  R  AF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D+K+HS +PSRMKRK SV INTEGSL   P
Subjt:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKFLP

A0A5A7U974 Retrotransposon gag protein5.9e-2162.24Show/hide
Query:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKFLP
        +SMA  EEENQC MST TR  AF+RLS+S SKK R STS FDRLK+TNDQ +R+M +L+ K F E N D+K++S +PSR+KRK S+ INTEGSL   P
Subjt:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKFLP

A0A5D3BBF9 Gag protease polyprotein1.2e-2164.29Show/hide
Query:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKFLP
        +SMA  EEENQC  ST  R  AF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D+K+HS +PSRMKRK SV INTEGSL   P
Subjt:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKFLP

A0A5D3BRW2 Retrotransposon gag protein3.5e-2164.65Show/hide
Query:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLF-DEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKFLP
        +SMA  EEENQC  S STR  AF+RLS+STSKK R STS FDRLK+TNDQ +R+M  L+ KLF +E N D+K+H+ IPSRMKRK SV I+TEGSL   P
Subjt:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLF-DEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKFLP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTTAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTC
AACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACGAGAAGCTTCATA
GTAGCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACACGCTTCGCTCTGCAA
TTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGTTTCGTTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGG
TTCTCACGCGCTTCGTGCAGTTCCTTCCTCAAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTC
CTTCCTCCAAGTTTGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCT
CACGCGCTTCGCTGCATTTCCTTCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTT
CCTCCAAGTTCAAAGGTTCTCGCGCGCTTCGATGCAGTTCCTTCCTCCAAGTTTGAAGGTTTTCACGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACG
TGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCAAAGGTTCTCACGCGCTTCGATGTAGTTCCTTCCTC
CAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGTTCCTTCCTCCAA
GTTCGAAGGTCCTCATGCTACGCTCGGCTGCACTCCTACGCTACTTCCTAAGGTCCAAAGGCCTCAATTGTCCTCACGCTGCGCTGCTTCCTTCTCCAAGTTCGAAGGTC
CTCATGCTACGCTCGGCTGCACTGCTGCGCTACTTCCTAAAGCGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAA
AGGAGCGGCGGCGGCACAAATCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGTGGCGGCGGCACAAGTCCAAGGAACATGTCCCAA
CTCAAGGAACACGTCCTTGCAACTCGTGCTGAAAGGCGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGCGCGGCGGCGGCACAAGTCCA
AGGAACATGTCCCAACTCAAGGAACATGTCTGTGCACTCGTGCTGAAAGGCGTGGCGGCGGCACAAGTCCAAGGAACATGTCCCAACTAAAGGAACACGTCCTTGCAACT
CGTGCTGAAAGGCGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGCGTGGCGGCGACACAAGCCCAAGGAACATGTCCCAACTCAAGGAACATG
TCTGTGCACTCGTGCTGAAAGGCGTGGCGGCGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACACGTCCTTGCAACTCGTGCTGAAAGGCGTGGCGGCGACACAA
GTCCAAGGAACATGTCCCAACTCAAGAAACATGTCCTTGCACTCGTGCTGAAAGGCGTGGCGGTGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACACGTCCTTG
CAACTCGTGCTGAAAGGCGTGGCAGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGCCGTGTACTCGTGCTGAAAGGCGTGACGGCGACACAAGTCCAAG
GAACATGTCCCAACTCAAGGAACATGTCATTGCACTCGTGCTGAAAGGCGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCTGTGCACTCGT
GCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTTAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTC
AACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACGAGAAGCTTCATA
GTAGCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACACGCTTCGCTCTGCAA
TTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGTTTCGTTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGG
TTCTCACGCGCTTCGTGCAGTTCCTTCCTCAAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTC
CTTCCTCCAAGTTTGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCT
CACGCGCTTCGCTGCATTTCCTTCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTT
CCTCCAAGTTCAAAGGTTCTCGCGCGCTTCGATGCAGTTCCTTCCTCCAAGTTTGAAGGTTTTCACGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACG
TGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCAAAGGTTCTCACGCGCTTCGATGTAGTTCCTTCCTC
CAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGTTCCTTCCTCCAA
GTTCGAAGGTCCTCATGCTACGCTCGGCTGCACTCCTACGCTACTTCCTAAGGTCCAAAGGCCTCAATTGTCCTCACGCTGCGCTGCTTCCTTCTCCAAGTTCGAAGGTC
CTCATGCTACGCTCGGCTGCACTGCTGCGCTACTTCCTAAAGCGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAA
AGGAGCGGCGGCGGCACAAATCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGTGGCGGCGGCACAAGTCCAAGGAACATGTCCCAA
CTCAAGGAACACGTCCTTGCAACTCGTGCTGAAAGGCGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGCGCGGCGGCGGCACAAGTCCA
AGGAACATGTCCCAACTCAAGGAACATGTCTGTGCACTCGTGCTGAAAGGCGTGGCGGCGGCACAAGTCCAAGGAACATGTCCCAACTAAAGGAACACGTCCTTGCAACT
CGTGCTGAAAGGCGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGCGTGGCGGCGACACAAGCCCAAGGAACATGTCCCAACTCAAGGAACATG
TCTGTGCACTCGTGCTGAAAGGCGTGGCGGCGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACACGTCCTTGCAACTCGTGCTGAAAGGCGTGGCGGCGACACAA
GTCCAAGGAACATGTCCCAACTCAAGAAACATGTCCTTGCACTCGTGCTGAAAGGCGTGGCGGTGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACACGTCCTTG
CAACTCGTGCTGAAAGGCGTGGCAGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGCCGTGTACTCGTGCTGAAAGGCGTGACGGCGACACAAGTCCAAG
GAACATGTCCCAACTCAAGGAACATGTCATTGCACTCGTGCTGAAAGGCGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCTGTGCACTCGT
GCTGA
Protein sequenceShow/hide protein sequence
MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKFLPPSLKVLTRFALQ
FLPPSSKVLTRFVAVPSSKFEGSHALRSAIPSPKFEGSHALRAVPSSKFEGSHALRCSSFPPSSKVLTRFVAVPSSKFEGSHALRSAIPSPKFEGSHALRAVPSSKFEGS
HALRCISFPQIRRFSRASLQFLPPKFEGSHALRCSSFLQVQRFSRASMQFLPPSLKVFTRFVAVPSSKFEGSHVLRSAIPSPKFEGSHALRAVPSSKFKGSHALRCSSFL
QVRRFSRASLQFLPPSSKVLTRFVAVPSSKFEVPSSKFEGPHATLGCTPTLLPKVQRPQLSSRCAASFSKFEGPHATLGCTAALLPKAWRRHKSKEHVPTQGTCPCTRAE
RSGGGTNPRNMSQLKEHVRALVLKGVAAAQVQGTCPNSRNTSLQLVLKGVAATQVQGTCPNSRNMSARRRHKSKEHVPTQGTCLCTRAERRGGGTSPRNMSQLKEHVLAT
RAERRGGDTSPRNMSQLKEHAWRRHKPKEHVPTQGTCLCTRAERRGGGTSPRNMSQLKEHVLATRAERRGGDTSPRNMSQLKKHVLALVLKGVAVAQVQGTCPNSRNTSL
QLVLKGVAATQVQGTCPNSRNMPCTRAERRDGDTSPRNMSQLKEHVIALVLKGVAATQVQGTCPNSRNMSVHSC