; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0012961 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0012961
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr1:46140726..46142011
RNA-Seq ExpressionLag0012961
SyntenyLag0012961
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.6e-4628.5Show/hide
Query:  LPNLDVNVVVGLAPILGFRWE-VTQKVLYSGSRY----LKKFSINCIVGNTLLFLKVVVILLSKLLSQVC-------RDFFWEGSKGDGGVHNVNWERTQ
        LP   + + +G  P     W+ V QK+    S +    L K     ++ +TL  L +  + + K+   +        R+F W G+     +  + W +  
Subjt:  LPNLDVNVVVGLAPILGFRWE-VTQKVLYSGSRY----LKKFSINCIVGNTLLFLKVVVILLSKLLSQVC-------RDFFWEGSKGDGGVHNVNWERTQ

Query:  LPKLSGGLGIGNFQLRNTALLAKWIWRFLQEEGSLWRNLIIAKYYDSEGVCLWPTQIQRGSYKSPWRFICSTIDMVASRVHRNIGNG-------------
         PK  GGLGI +    N ALL KW+W+FL E+  LW+ LII+K YD E +  +P+  +  S  SPW+ +   I      +   + +G             
Subjt:  LPKLSGGLGIGNFQLRNTALLAKWIWRFLQEEGSLWRNLIIAKYYDSEGVCLWPTQIQRGSYKSPWRFICSTIDMVASRVHRNIGNG-------------

Query:  ----------------------QVWNSSQLAWNLCPRRYLNEFETNEWAQLSHLLSSIRLRDMNDSWSWLLHPSSLFTVKSLMHDILHAPTTTSN---NL
                              + WN S   W+L   R L + E N W  +   L +      +    W L+ +++F   S+   I  AP + +N   NL
Subjt:  ----------------------QVWNSSQLAWNLCPRRYLNEFETNEWAQLSHLLSSIRLRDMNDSWSWLLHPSSLFTVKSLMHDILHAPTTTSN---NL

Query:  YAVIWKDHYPKKIKIFLWELSLGAINMADRLQQRMPHFHLSPSWCIMCSSNMENPGHLFVTCPFASRYWAFMVDAFGWYIPLPVDIHDLLASIFVGHPFY
        Y  +WK  +PKK K F+W L  G IN ADRLQ+R+P++ LSP+WC MC+ + E+  HLF+ CP++ + W+       W    P D+  L+ +I       
Subjt:  YAVIWKDHYPKKIKIFLWELSLGAINMADRLQQRMPHFHLSPSWCIMCSSNMENPGHLFVTCPFASRYWAFMVDAFGWYIPLPVDIHDLLASIFVGHPFY

Query:  GDKKTLWLAFNRAFFWYLWNGRNGRIFR
          K  +    N    W +W  RN RIF+
Subjt:  GDKKTLWLAFNRAFFWYLWNGRNGRIFR

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.2e-4428.44Show/hide
Query:  LPNLDVNVVVGLAPILGFRWE-VTQKVLYSGSRY----LKKFSINCIVGNTLLFLKVVVILLSKL-------LSQVCRDFFWEGSKGDGGVHNVNWERTQ
        LP   + + +G  P     W+ + QK+    S +    L K     ++ +TL  L +  + + K+       +    R+F W G+     +  + W +  
Subjt:  LPNLDVNVVVGLAPILGFRWE-VTQKVLYSGSRY----LKKFSINCIVGNTLLFLKVVVILLSKL-------LSQVCRDFFWEGSKGDGGVHNVNWERTQ

Query:  LPKLSGGLGIGNFQLRNTALLAKWIWRFLQEEGSLWRNLIIAKYYDSEGVCLWPTQIQRGSYKSPWRFICSTIDMVASRVHRNIGNGQ------------
         PK  GGLGI +    N ALL KW+W+FL E+  LW+ LII+K YD E +  +P++ +  S  SPW+ + + I      +   + +G+            
Subjt:  LPKLSGGLGIGNFQLRNTALLAKWIWRFLQEEGSLWRNLIIAKYYDSEGVCLWPTQIQRGSYKSPWRFICSTIDMVASRVHRNIGNGQ------------

Query:  -----------------------VWNSSQLAWNLCPRRYLNEFETNEWAQLSHLLSSIRLRDMNDSWS-WLLHPSSLFTVKSLMHDILHA---PTTTSNN
                               +WN S   WN+   R L + E N W  +   L +  L D   S   W L+ +++F   S+  D+  A   PT    +
Subjt:  -----------------------VWNSSQLAWNLCPRRYLNEFETNEWAQLSHLLSSIRLRDMNDSWS-WLLHPSSLFTVKSLMHDILHA---PTTTSNN

Query:  LYAVIWKDHYPKKIKIFLWELSLGAINMADRLQQRMPHFHLSPSWCIMCSSNMENPGHLFVTCPFASRYWAFMVDAFGWYIPLPVDIHDLLASIFVGHPF
        LY  +WK  +PKK K F+W L  G IN ADRLQ+R+P++ LSP+WC MC+ + E+  HLF+ CP++ + W+       W    P D+  L  +I      
Subjt:  LYAVIWKDHYPKKIKIFLWELSLGAINMADRLQQRMPHFHLSPSWCIMCSSNMENPGHLFVTCPFASRYWAFMVDAFGWYIPLPVDIHDLLASIFVGHPF

Query:  YGDKKTLWLAFNRAFFWYLWNGRNGRIFR
           K  +         W +W  RN RIF+
Subjt:  YGDKKTLWLAFNRAFFWYLWNGRNGRIFR

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.1e-4328.44Show/hide
Query:  LPNLDVNVVVGLAPILGFRWE-VTQKVLYSGSRY----LKKFSINCIVGNTLLFLKVVVILLSKL-------LSQVCRDFFWEGSKGDGGVHNVNWERTQ
        LP   + + +G  P     W+ + QK+    S +    L K     ++ +TL  L +  + + K+       +    R+F W G+     +  + W +  
Subjt:  LPNLDVNVVVGLAPILGFRWE-VTQKVLYSGSRY----LKKFSINCIVGNTLLFLKVVVILLSKL-------LSQVCRDFFWEGSKGDGGVHNVNWERTQ

Query:  LPKLSGGLGIGNFQLRNTALLAKWIWRFLQEEGSLWRNLIIAKYYDSEGVCLWPTQIQRGSYKSPWRFICSTIDMVASRVHRNIGNGQ------------
         PK  GGLGI      N ALL KW+W+FL E+  LW+ LII+K YD E +  +P++ +  S  SPW+ + + I      +   + +G+            
Subjt:  LPKLSGGLGIGNFQLRNTALLAKWIWRFLQEEGSLWRNLIIAKYYDSEGVCLWPTQIQRGSYKSPWRFICSTIDMVASRVHRNIGNGQ------------

Query:  -----------------------VWNSSQLAWNLCPRRYLNEFETNEWAQLSHLLSSIRLRDMNDSWS-WLLHPSSLFTVKSLMHDILHA---PTTTSNN
                               +WN S   WN+   R L + E N W  +   L +  L D   S   W L+ +++F   S+  D+  A   PT    +
Subjt:  -----------------------VWNSSQLAWNLCPRRYLNEFETNEWAQLSHLLSSIRLRDMNDSWS-WLLHPSSLFTVKSLMHDILHA---PTTTSNN

Query:  LYAVIWKDHYPKKIKIFLWELSLGAINMADRLQQRMPHFHLSPSWCIMCSSNMENPGHLFVTCPFASRYWAFMVDAFGWYIPLPVDIHDLLASIFVGHPF
        LY  +WK  +PKK K F+W L  G IN ADRLQ+R+P++ LSP+WC MC+ + E+  HLF+ CP++ + W+       W    P D+  L  +I      
Subjt:  LYAVIWKDHYPKKIKIFLWELSLGAINMADRLQQRMPHFHLSPSWCIMCSSNMENPGHLFVTCPFASRYWAFMVDAFGWYIPLPVDIHDLLASIFVGHPF

Query:  YGDKKTLWLAFNRAFFWYLWNGRNGRIFR
           K  +         W +W  RN RIF+
Subjt:  YGDKKTLWLAFNRAFFWYLWNGRNGRIFR

KAA0046762.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.9e-4329.78Show/hide
Query:  LLSKLLSQVCRDFFWEGSKGDGGVHNVNWERTQLPKLSGGLGIGNFQLRNTALLAKWIWRFLQEEGSLWRNLIIAKY---YDSEGVCLWPTQIQRGSYKS
        L  K + +  R+F W+G+    G H +NW +    K  GGLGI    + N ALL KW+WR+L E  +LWR LI  KY   Y  +     P+ I   + K+
Subjt:  LLSKLLSQVCRDFFWEGSKGDGGVHNVNWERTQLPKLSGGLGIGNFQLRNTALLAKWIWRFLQEEGSLWRNLIIAKY---YDSEGVCLWPTQIQRGSYKS

Query:  PWRFICSTIDMVASRVHRNIGNG-----------------------------------QVWNSSQLAWNLCPRRYLNEFETNEWAQLSHLLSSIRLRDMN
        PWR I   +D   S    ++ NG                                     WN+    W +  RR LN+ E N+WA++  +L   R    +
Subjt:  PWRFICSTIDMVASRVHRNIGNG-----------------------------------QVWNSSQLAWNLCPRRYLNEFETNEWAQLSHLLSSIRLRDMN

Query:  DSWSWLLHPSSLFTVKS----LMHDILHAPTTTSNNLYAVIWKDHYPKKIKIFLWELSLGAINMADRLQQRMPHFHLSPSWCIMCSSNMENPGHLFVTCP
           +W+    + F++ S    +   +  +     + L  +IWK   P KIK F+W L    IN  + +Q RMP+  L PSWC++C  + E+  HLF+ C 
Subjt:  DSWSWLLHPSSLFTVKS----LMHDILHAPTTTSNNLYAVIWKDHYPKKIKIFLWELSLGAINMADRLQQRMPHFHLSPSWCIMCSSNMENPGHLFVTCP

Query:  FASRYWAFMVDAFGWYIPLPVDIHDLLASIFVGHP--FYGDKKTLWLAFNRAFFWYLWNGRNGRIF
             W+F+ +AF     L +   DL    F   P  F  ++K ++     A FW +W  RN RIF
Subjt:  FASRYWAFMVDAFGWYIPLPVDIHDLLASIFVGHP--FYGDKKTLWLAFNRAFFWYLWNGRNGRIF

VVA25489.1 Hypothetical predicted protein, partial [Prunus dulcis]1.1e-4131.63Show/hide
Query:  LYSGSRYLKKFSINCIVGNTLLFLKVVVILLSKLLSQVCRDFFWEGSKGDGGVHNVNWERTQLPKLSGGLGIGNFQLRNTALLAKWIWRFLQEEGSLWRN
        L  G R     ++ C +    + L  + I ++  + ++ RDF WEG  G    H V+WE     K  GGLG+G+ + R+ AL AKW+WRF  E  +LW  
Subjt:  LYSGSRYLKKFSINCIVGNTLLFLKVVVILLSKLLSQVCRDFFWEGSKGDGGVHNVNWERTQLPKLSGGLGIGNFQLRNTALLAKWIWRFLQEEGSLWRN

Query:  LIIAKY-YDSEGVCLWPTQ-IQRGSYKSPWRFICSTIDMVASRVHRNIGNG---------------------QVWNSSQ----------------LAWNL
        +I + Y  D+ G   W  +   RGS + PWR I S  ++        +G+G                     +++N S+                L+W+ 
Subjt:  LIIAKY-YDSEGVCLWPTQ-IQRGSYKSPWRFICSTIDMVASRVHRNIGNG---------------------QVWNSSQ----------------LAWNL

Query:  CPRRYLNEFETNEWAQLSHLLSSIRL-RDMNDSWSWLLHPSSLFTVKSLMHDILHAPTTTSNNLYAVIWKDHYPKKIKIFLWELSLGAINMADRLQQRMP
          RR LNE E  E A+L  LL  +RL     D   W   PS LFT  SL   I +     +   Y  IWK   P K+KIF+W+  LG +N  D LQ+R P
Subjt:  CPRRYLNEFETNEWAQLSHLLSSIRL-RDMNDSWSWLLHPSSLFTVKSLMHDILHAPTTTSNNLYAVIWKDHYPKKIKIFLWELSLGAINMADRLQQRMP

Query:  HFHLSPSWCIMCSSNMENPGHLFVTCPFASRYWAFMVDAFGWYIPLPVDIHDLLASIFVGHPFYGDK-KTLWLAFNRAFFWYLWNGRNGRIF
        +  +SP WC +C+   ++  HL + CPF+ + W  ++        +P    +L  SI +     G K K LW +  +A  W LW  RN RIF
Subjt:  HFHLSPSWCIMCSSNMENPGHLFVTCPFASRYWAFMVDAFGWYIPLPVDIHDLLASIFVGHPFYGDK-KTLWLAFNRAFFWYLWNGRNGRIF

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein1.3e-4628.5Show/hide
Query:  LPNLDVNVVVGLAPILGFRWE-VTQKVLYSGSRY----LKKFSINCIVGNTLLFLKVVVILLSKLLSQVC-------RDFFWEGSKGDGGVHNVNWERTQ
        LP   + + +G  P     W+ V QK+    S +    L K     ++ +TL  L +  + + K+   +        R+F W G+     +  + W +  
Subjt:  LPNLDVNVVVGLAPILGFRWE-VTQKVLYSGSRY----LKKFSINCIVGNTLLFLKVVVILLSKLLSQVC-------RDFFWEGSKGDGGVHNVNWERTQ

Query:  LPKLSGGLGIGNFQLRNTALLAKWIWRFLQEEGSLWRNLIIAKYYDSEGVCLWPTQIQRGSYKSPWRFICSTIDMVASRVHRNIGNG-------------
         PK  GGLGI +    N ALL KW+W+FL E+  LW+ LII+K YD E +  +P+  +  S  SPW+ +   I      +   + +G             
Subjt:  LPKLSGGLGIGNFQLRNTALLAKWIWRFLQEEGSLWRNLIIAKYYDSEGVCLWPTQIQRGSYKSPWRFICSTIDMVASRVHRNIGNG-------------

Query:  ----------------------QVWNSSQLAWNLCPRRYLNEFETNEWAQLSHLLSSIRLRDMNDSWSWLLHPSSLFTVKSLMHDILHAPTTTSN---NL
                              + WN S   W+L   R L + E N W  +   L +      +    W L+ +++F   S+   I  AP + +N   NL
Subjt:  ----------------------QVWNSSQLAWNLCPRRYLNEFETNEWAQLSHLLSSIRLRDMNDSWSWLLHPSSLFTVKSLMHDILHAPTTTSN---NL

Query:  YAVIWKDHYPKKIKIFLWELSLGAINMADRLQQRMPHFHLSPSWCIMCSSNMENPGHLFVTCPFASRYWAFMVDAFGWYIPLPVDIHDLLASIFVGHPFY
        Y  +WK  +PKK K F+W L  G IN ADRLQ+R+P++ LSP+WC MC+ + E+  HLF+ CP++ + W+       W    P D+  L+ +I       
Subjt:  YAVIWKDHYPKKIKIFLWELSLGAINMADRLQQRMPHFHLSPSWCIMCSSNMENPGHLFVTCPFASRYWAFMVDAFGWYIPLPVDIHDLLASIFVGHPFY

Query:  GDKKTLWLAFNRAFFWYLWNGRNGRIFR
          K  +    N    W +W  RN RIF+
Subjt:  GDKKTLWLAFNRAFFWYLWNGRNGRIFR

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein3.5e-4428.44Show/hide
Query:  LPNLDVNVVVGLAPILGFRWE-VTQKVLYSGSRY----LKKFSINCIVGNTLLFLKVVVILLSKL-------LSQVCRDFFWEGSKGDGGVHNVNWERTQ
        LP   + + +G  P     W+ + QK+    S +    L K     ++ +TL  L +  + + K+       +    R+F W G+     +  + W +  
Subjt:  LPNLDVNVVVGLAPILGFRWE-VTQKVLYSGSRY----LKKFSINCIVGNTLLFLKVVVILLSKL-------LSQVCRDFFWEGSKGDGGVHNVNWERTQ

Query:  LPKLSGGLGIGNFQLRNTALLAKWIWRFLQEEGSLWRNLIIAKYYDSEGVCLWPTQIQRGSYKSPWRFICSTIDMVASRVHRNIGNGQ------------
         PK  GGLGI +    N ALL KW+W+FL E+  LW+ LII+K YD E +  +P++ +  S  SPW+ + + I      +   + +G+            
Subjt:  LPKLSGGLGIGNFQLRNTALLAKWIWRFLQEEGSLWRNLIIAKYYDSEGVCLWPTQIQRGSYKSPWRFICSTIDMVASRVHRNIGNGQ------------

Query:  -----------------------VWNSSQLAWNLCPRRYLNEFETNEWAQLSHLLSSIRLRDMNDSWS-WLLHPSSLFTVKSLMHDILHA---PTTTSNN
                               +WN S   WN+   R L + E N W  +   L +  L D   S   W L+ +++F   S+  D+  A   PT    +
Subjt:  -----------------------VWNSSQLAWNLCPRRYLNEFETNEWAQLSHLLSSIRLRDMNDSWS-WLLHPSSLFTVKSLMHDILHA---PTTTSNN

Query:  LYAVIWKDHYPKKIKIFLWELSLGAINMADRLQQRMPHFHLSPSWCIMCSSNMENPGHLFVTCPFASRYWAFMVDAFGWYIPLPVDIHDLLASIFVGHPF
        LY  +WK  +PKK K F+W L  G IN ADRLQ+R+P++ LSP+WC MC+ + E+  HLF+ CP++ + W+       W    P D+  L  +I      
Subjt:  LYAVIWKDHYPKKIKIFLWELSLGAINMADRLQQRMPHFHLSPSWCIMCSSNMENPGHLFVTCPFASRYWAFMVDAFGWYIPLPVDIHDLLASIFVGHPF

Query:  YGDKKTLWLAFNRAFFWYLWNGRNGRIFR
           K  +         W +W  RN RIF+
Subjt:  YGDKKTLWLAFNRAFFWYLWNGRNGRIFR

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein1.0e-4328.44Show/hide
Query:  LPNLDVNVVVGLAPILGFRWE-VTQKVLYSGSRY----LKKFSINCIVGNTLLFLKVVVILLSKL-------LSQVCRDFFWEGSKGDGGVHNVNWERTQ
        LP   + + +G  P     W+ + QK+    S +    L K     ++ +TL  L +  + + K+       +    R+F W G+     +  + W +  
Subjt:  LPNLDVNVVVGLAPILGFRWE-VTQKVLYSGSRY----LKKFSINCIVGNTLLFLKVVVILLSKL-------LSQVCRDFFWEGSKGDGGVHNVNWERTQ

Query:  LPKLSGGLGIGNFQLRNTALLAKWIWRFLQEEGSLWRNLIIAKYYDSEGVCLWPTQIQRGSYKSPWRFICSTIDMVASRVHRNIGNGQ------------
         PK  GGLGI      N ALL KW+W+FL E+  LW+ LII+K YD E +  +P++ +  S  SPW+ + + I      +   + +G+            
Subjt:  LPKLSGGLGIGNFQLRNTALLAKWIWRFLQEEGSLWRNLIIAKYYDSEGVCLWPTQIQRGSYKSPWRFICSTIDMVASRVHRNIGNGQ------------

Query:  -----------------------VWNSSQLAWNLCPRRYLNEFETNEWAQLSHLLSSIRLRDMNDSWS-WLLHPSSLFTVKSLMHDILHA---PTTTSNN
                               +WN S   WN+   R L + E N W  +   L +  L D   S   W L+ +++F   S+  D+  A   PT    +
Subjt:  -----------------------VWNSSQLAWNLCPRRYLNEFETNEWAQLSHLLSSIRLRDMNDSWS-WLLHPSSLFTVKSLMHDILHA---PTTTSNN

Query:  LYAVIWKDHYPKKIKIFLWELSLGAINMADRLQQRMPHFHLSPSWCIMCSSNMENPGHLFVTCPFASRYWAFMVDAFGWYIPLPVDIHDLLASIFVGHPF
        LY  +WK  +PKK K F+W L  G IN ADRLQ+R+P++ LSP+WC MC+ + E+  HLF+ CP++ + W+       W    P D+  L  +I      
Subjt:  LYAVIWKDHYPKKIKIFLWELSLGAINMADRLQQRMPHFHLSPSWCIMCSSNMENPGHLFVTCPFASRYWAFMVDAFGWYIPLPVDIHDLLASIFVGHPF

Query:  YGDKKTLWLAFNRAFFWYLWNGRNGRIFR
           K  +         W +W  RN RIF+
Subjt:  YGDKKTLWLAFNRAFFWYLWNGRNGRIFR

A0A5A7TTK1 LINE-1 retrotransposable element ORF2 protein3.8e-4329.78Show/hide
Query:  LLSKLLSQVCRDFFWEGSKGDGGVHNVNWERTQLPKLSGGLGIGNFQLRNTALLAKWIWRFLQEEGSLWRNLIIAKY---YDSEGVCLWPTQIQRGSYKS
        L  K + +  R+F W+G+    G H +NW +    K  GGLGI    + N ALL KW+WR+L E  +LWR LI  KY   Y  +     P+ I   + K+
Subjt:  LLSKLLSQVCRDFFWEGSKGDGGVHNVNWERTQLPKLSGGLGIGNFQLRNTALLAKWIWRFLQEEGSLWRNLIIAKY---YDSEGVCLWPTQIQRGSYKS

Query:  PWRFICSTIDMVASRVHRNIGNG-----------------------------------QVWNSSQLAWNLCPRRYLNEFETNEWAQLSHLLSSIRLRDMN
        PWR I   +D   S    ++ NG                                     WN+    W +  RR LN+ E N+WA++  +L   R    +
Subjt:  PWRFICSTIDMVASRVHRNIGNG-----------------------------------QVWNSSQLAWNLCPRRYLNEFETNEWAQLSHLLSSIRLRDMN

Query:  DSWSWLLHPSSLFTVKS----LMHDILHAPTTTSNNLYAVIWKDHYPKKIKIFLWELSLGAINMADRLQQRMPHFHLSPSWCIMCSSNMENPGHLFVTCP
           +W+    + F++ S    +   +  +     + L  +IWK   P KIK F+W L    IN  + +Q RMP+  L PSWC++C  + E+  HLF+ C 
Subjt:  DSWSWLLHPSSLFTVKS----LMHDILHAPTTTSNNLYAVIWKDHYPKKIKIFLWELSLGAINMADRLQQRMPHFHLSPSWCIMCSSNMENPGHLFVTCP

Query:  FASRYWAFMVDAFGWYIPLPVDIHDLLASIFVGHP--FYGDKKTLWLAFNRAFFWYLWNGRNGRIF
             W+F+ +AF     L +   DL    F   P  F  ++K ++     A FW +W  RN RIF
Subjt:  FASRYWAFMVDAFGWYIPLPVDIHDLLASIFVGHP--FYGDKKTLWLAFNRAFFWYLWNGRNGRIF

A0A803P465 Uncharacterized protein3.0e-4831.32Show/hide
Query:  LSKLLSQVCRDFFWEGSKGDGGVHNVNWERTQLPKLSGGLGIGNFQLRNTALLAKWIWRFLQEEGSLWRNLIIAKYYDSEGVCLWPTQI-QRGSYKSPWR
        ++K L ++ RDF WEGS+  GG H V W+    P+  GGLGIG  +LRN +LL KW+WRF  E+ SLW  +++++Y  ++   LW ++   R S K PWR
Subjt:  LSKLLSQVCRDFFWEGSKGDGGVHNVNWERTQLPKLSGGLGIGNFQLRNTALLAKWIWRFLQEEGSLWRNLIIAKYYDSEGVCLWPTQI-QRGSYKSPWR

Query:  FICSTIDMVASRVHRNIGNG---QVWNSSQL--------------------------------------AWNLCPRRYLNEFETNEWAQLSHLLSSIRLR
         I    D     VH  +G G   + W    +                                      +WN   RR L + E      L   +  +R+ 
Subjt:  FICSTIDMVASRVHRNIGNG---QVWNSSQL--------------------------------------AWNLCPRRYLNEFETNEWAQLSHLLSSIRLR

Query:  DMN-DSWSWLLHPSSLFTVKSLMHDILHAPTTTSNNLYAVIWKDHYPKKIKIFLWELSLGAINMADRLQQRMPHFHLSPSWCIMCSSNMENPGHLFVTCP
         ++ DS  W   PS +F+ KS    ++  P+    +    +WK   P K+K+F W L+L  +N+ D++Q+R P  ++SP WC+ C  + E+ GHLF+ C 
Subjt:  DMN-DSWSWLLHPSSLFTVKSLMHDILHAPTTTSNNLYAVIWKDHYPKKIKIFLWELSLGAINMADRLQQRMPHFHLSPSWCIMCSSNMENPGHLFVTCP

Query:  FASRYWAFMVDAFGWYIPLPVDIHDLLASIFVGHPFYGDKKTLWLAFNRAFFWYLWNGRNGRIF
        F  R W +++  FG    +P  +  L+AS  +G      K  LW +   A  W +W  RN RIF
Subjt:  FASRYWAFMVDAFGWYIPLPVDIHDLLASIFVGHPFYGDKKTLWLAFNRAFFWYLWNGRNGRIF

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657501.2e-1725.07Show/hide
Query:  LSQVCRDFFWEGSKGDGGVHNVNWERTQLPKLSGGLGIGNFQLRNTALLAKWIWRFLQEEGSLWRNLIIAKYYDSE-GVCLWPTQIQRGSYKSPWRFICS
        L Q+ R F W  +      H V W +   PK  GGLG+   +  N AL++K  WR LQE+ SLW  ++  KY+  E     W   I +GS+ S WR I  
Subjt:  LSQVCRDFFWEGSKGDGGVHNVNWERTQLPKLSGGLGIGNFQLRNTALLAKWIWRFLQEEGSLWRNLIIAKYYDSE-GVCLWPTQIQRGSYKSPWRFICS

Query:  TI-DMVASRVHRNIGNGQV-------WNSSQLAWNL------------------CPRR-----YLNEFETNEWAQLSHLLSSIRLRDMNDSWSWLLHPSS
         + D+V+  V    G+GQ        W S +    L                   P R      ++ + TN        +    +    D  SW      
Subjt:  TI-DMVASRVHRNIGNGQV-------WNSSQLAWNL------------------CPRR-----YLNEFETNEWAQLSHLLSSIRLRDMNDSWSWLLHPSS

Query:  LFTVKSL--MHDILHAPTTTSNNLYAVIWKDHYPKKIKIFLWELSLGAINMADRLQQRMPHFHLSPS-WCIMCSSNMENPGHLFVTCPFASRYWA-----
         F+V+S   M  +   P     + +  +WK   P+++K FLW +   A+   +   +R    HLS S  C +C   +E+  H+   CP     W      
Subjt:  LFTVKSL--MHDILHAPTTTSNNLYAVIWKDHYPKKIKIFLWELSLGAINMADRLQQRMPHFHLSPS-WCIMCSSNMENPGHLFVTCPFASRYWA-----

Query:  ------FMVDAFGWYIPLPVDIHDLLASIFVGHPFYGDKKTLWLAFNRAFFWYLWNGRNGRIF
              F    F W       ++D L          G +   W        W+ W  R G IF
Subjt:  ------FMVDAFGWYIPLPVDIHDLLASIFVGHPFYGDKKTLWLAFNRAFFWYLWNGRNGRIF

Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein2.7e-2026.3Show/hide
Query:  KLLSQVCRDFFWEGSKGDGGVHNVNWERTQLPKLSGGLGIGNFQLRNTALLAKWIWRFLQEEGSLWRNLIIAKYYDSEGVCLWPTQIQRGSYKS-PWRFI
        K +  V  DF+W   +   G+H   W+     K  GG+G  + +  N ALL K +WR L    SL   +  ++Y+        P     GS  S  W+ I
Subjt:  KLLSQVCRDFFWEGSKGDGGVHNVNWERTQLPKLSGGLGIGNFQLRNTALLAKWIWRFLQEEGSLWRNLIIAKYYDSEGVCLWPTQIQRGSYKS-PWRFI

Query:  CSTIDMVASRVHRNIGNGQ---VWNSSQL----------AWNLCPRRY-----------LNEFETNEWAQ----------LSHLLSSIRL--RDMNDSWS
         ++ +++       +GNG+   +W    L             + P+ Y           L +    EW +             L+  +R   R + DS++
Subjt:  CSTIDMVASRVHRNIGNGQ---VWNSSQL----------AWNLCPRRY-----------LNEFETNEWAQ----------LSHLLSSIRL--RDMNDSWS

Query:  WLLHPSSLFTVKS---LMHDILH---APTTTS----NNLYAVIWKDHYPKKIKIFLWELSLGAINMADRLQQRMPHFHLS-PSWCIMCSSNMENPGHLFV
        W    S  +TVKS   ++  I++   +P   S    N +Y  IWK     KI+ FLW+    ++ +A  L  R    HLS  S CI C S  E   HL  
Subjt:  WLLHPSSLFTVKS---LMHDILH---APTTTS----NNLYAVIWKDHYPKKIKIFLWELSLGAINMADRLQQRMPHFHLS-PSWCIMCSSNMENPGHLFV

Query:  TCPFASRYWAFMVDAFGWYIPLPVDIHDLLASIFV----------GHPFYGDKKTL--WLAFNRAFFWYLWNGRNGRIFRVLNF
         C FA   WA         IP+P+   +   SI+V          G+P +     L  WL       W LW  RN  +FR   F
Subjt:  TCPFASRYWAFMVDAFGWYIPLPVDIHDLLASIFV----------GHPFYGDKKTL--WLAFNRAFFWYLWNGRNGRIFRVLNF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCAGACTTGGAGGAGATGGCTACCAAATTTGGATGTAAATGTGGTAGTTGGCCTAGCACCTATCTTGGGCTTCCGTTGGGAGGTAACTCAAAAAGTTCTTTATTC
TGGCAGCCGGTATTTGAAAAAATTCAGCATAAATTGCATAGTTGGAAATACGCTTTTATTTCTAAAGGTGGTCGTCATACTCTTATCCAAGCTACTCTCTCAAGTATGCC
GCGATTTCTTTTGGGAAGGATCTAAAGGGGATGGTGGTGTGCATAATGTTAATTGGGAACGAACACAACTTCCGAAATTATCAGGTGGTCTTGGCATTGGTAATTTTCAG
CTTAGAAATACGGCCCTTTTGGCCAAATGGATATGGAGGTTTTTGCAAGAGGAAGGATCTTTGTGGCGTAATCTCATTATTGCTAAATATTATGATTCTGAAGGTGTTTG
TCTTTGGCCTACTCAAATTCAAAGAGGATCCTATAAATCGCCTTGGCGCTTTATTTGTTCTACTATAGATATGGTTGCCAGTCGGGTTCATCGTAATATCGGTAATGGCC
AAGTTTGGAATTCATCTCAATTGGCTTGGAACCTTTGCCCTCGTCGTTATCTTAACGAGTTTGAAACTAATGAATGGGCTCAACTTTCTCATCTACTATCTTCTATTAGA
TTACGGGATATGAATGACTCTTGGTCTTGGCTTCTTCATCCATCCAGTTTGTTTACTGTTAAATCTTTGATGCATGACATTTTGCATGCCCCTACCACCACATCGAATAA
TCTATATGCTGTGATATGGAAAGATCATTATCCTAAAAAGATAAAAATCTTTCTATGGGAGCTTAGTCTTGGGGCCATCAATATGGCGGATCGCCTTCAACAAAGAATGC
CTCACTTTCACCTATCGCCATCTTGGTGCATTATGTGCTCATCAAACATGGAGAATCCGGGCCATCTTTTTGTTACGTGTCCTTTTGCTTCTAGATATTGGGCCTTTATG
GTTGATGCTTTCGGTTGGTATATTCCGTTGCCGGTGGACATTCATGATCTTTTGGCTTCTATTTTTGTGGGTCATCCTTTTTATGGAGATAAGAAGACTCTATGGCTTGC
TTTCAATAGAGCTTTCTTTTGGTATCTATGGAACGGAAGAAATGGAAGAATTTTCAGGGTTCTTAACTTTCGATTCTTTTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATCAGACTTGGAGGAGATGGCTACCAAATTTGGATGTAAATGTGGTAGTTGGCCTAGCACCTATCTTGGGCTTCCGTTGGGAGGTAACTCAAAAAGTTCTTTATTC
TGGCAGCCGGTATTTGAAAAAATTCAGCATAAATTGCATAGTTGGAAATACGCTTTTATTTCTAAAGGTGGTCGTCATACTCTTATCCAAGCTACTCTCTCAAGTATGCC
GCGATTTCTTTTGGGAAGGATCTAAAGGGGATGGTGGTGTGCATAATGTTAATTGGGAACGAACACAACTTCCGAAATTATCAGGTGGTCTTGGCATTGGTAATTTTCAG
CTTAGAAATACGGCCCTTTTGGCCAAATGGATATGGAGGTTTTTGCAAGAGGAAGGATCTTTGTGGCGTAATCTCATTATTGCTAAATATTATGATTCTGAAGGTGTTTG
TCTTTGGCCTACTCAAATTCAAAGAGGATCCTATAAATCGCCTTGGCGCTTTATTTGTTCTACTATAGATATGGTTGCCAGTCGGGTTCATCGTAATATCGGTAATGGCC
AAGTTTGGAATTCATCTCAATTGGCTTGGAACCTTTGCCCTCGTCGTTATCTTAACGAGTTTGAAACTAATGAATGGGCTCAACTTTCTCATCTACTATCTTCTATTAGA
TTACGGGATATGAATGACTCTTGGTCTTGGCTTCTTCATCCATCCAGTTTGTTTACTGTTAAATCTTTGATGCATGACATTTTGCATGCCCCTACCACCACATCGAATAA
TCTATATGCTGTGATATGGAAAGATCATTATCCTAAAAAGATAAAAATCTTTCTATGGGAGCTTAGTCTTGGGGCCATCAATATGGCGGATCGCCTTCAACAAAGAATGC
CTCACTTTCACCTATCGCCATCTTGGTGCATTATGTGCTCATCAAACATGGAGAATCCGGGCCATCTTTTTGTTACGTGTCCTTTTGCTTCTAGATATTGGGCCTTTATG
GTTGATGCTTTCGGTTGGTATATTCCGTTGCCGGTGGACATTCATGATCTTTTGGCTTCTATTTTTGTGGGTCATCCTTTTTATGGAGATAAGAAGACTCTATGGCTTGC
TTTCAATAGAGCTTTCTTTTGGTATCTATGGAACGGAAGAAATGGAAGAATTTTCAGGGTTCTTAACTTTCGATTCTTTTTTTGA
Protein sequenceShow/hide protein sequence
MNQTWRRWLPNLDVNVVVGLAPILGFRWEVTQKVLYSGSRYLKKFSINCIVGNTLLFLKVVVILLSKLLSQVCRDFFWEGSKGDGGVHNVNWERTQLPKLSGGLGIGNFQ
LRNTALLAKWIWRFLQEEGSLWRNLIIAKYYDSEGVCLWPTQIQRGSYKSPWRFICSTIDMVASRVHRNIGNGQVWNSSQLAWNLCPRRYLNEFETNEWAQLSHLLSSIR
LRDMNDSWSWLLHPSSLFTVKSLMHDILHAPTTTSNNLYAVIWKDHYPKKIKIFLWELSLGAINMADRLQQRMPHFHLSPSWCIMCSSNMENPGHLFVTCPFASRYWAFM
VDAFGWYIPLPVDIHDLLASIFVGHPFYGDKKTLWLAFNRAFFWYLWNGRNGRIFRVLNFRFFF