; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0013011 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0013011
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionB3 domain-containing transcription factor VRN1-like
Genome locationchr1:46596912..46597519
RNA-Seq ExpressionLag0013011
SyntenyLag0013011
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR003340 - B3 DNA binding domain
IPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132589.1 B3 domain-containing transcription factor VRN1-like isoform X1 [Momordica charantia]9.8e-3855.62Show/hide
Query:  PHFFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEI
        PHFF I++Q NL+ ++LMIP+ FV EYGKFLS+S+ LKLPDGKEWKVGL    NGAVWLQNGW  FAEHY L+ GS LV R D NS+F T+IF  +GSEI
Subjt:  PHFFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEI

Query:  KYFRKIEDF------------EESNDVFSQ-PKEEEKASFTTSLQIRKKMRKEELLFLPIMEPEEGMRI
        +Y  K  DF            +ES ++F Q  K+ EK S  +S Q RKKMR E   F P M P+EG  I
Subjt:  KYFRKIEDF------------EESNDVFSQ-PKEEEKASFTTSLQIRKKMRKEELLFLPIMEPEEGMRI

XP_022132590.1 B3 domain-containing transcription factor VRN1-like isoform X2 [Momordica charantia]1.4e-3155.92Show/hide
Query:  MIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEIKYFRKIEDF--------
        MIP+ FV EYGKFLS+S+ LKLPDGKEWKVGL    NGAVWLQNGW  FAEHY L+ GS LV R D NS+F T+IF  +GSEI+Y  K  DF        
Subjt:  MIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEIKYFRKIEDF--------

Query:  ----EESNDVFSQ-PKEEEKASFTTSLQIRKKMRKEELLFLPIMEPEEGMRI
            +ES ++F Q  K+ EK S  +S Q RKKMR E   F P M P+EG  I
Subjt:  ----EESNDVFSQ-PKEEEKASFTTSLQIRKKMRKEELLFLPIMEPEEGMRI

XP_022132593.1 B3 domain-containing transcription factor VRN1-like [Momordica charantia]1.9e-4165.25Show/hide
Query:  PLSSNIVLHPPHFFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHT
        PL SNI+L+PP FF I+LQ NL+HKKLMIP+ FV +YGKFLS S+ L+L DG EWK+GLT A NGAVWLQNGW  FAEHYSLEFGS LVFRFDG S+FHT
Subjt:  PLSSNIVLHPPHFFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHT

Query:  MIFHTNGSEIKYFRKIE----DFEESNDVFSQPKEEEKASF
         IF   GSEIKY         DFEE +D  +  K+ EK SF
Subjt:  MIFHTNGSEIKYFRKIE----DFEESNDVFSQPKEEEKASF

XP_022132700.1 B3 domain-containing transcription factor VRN1-like [Momordica charantia]4.1e-3655.15Show/hide
Query:  PPHFFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSE
        PPHFF ++LQ +++ K+LMIP+ FV +YGKFLS+SI LKLPDG EWKVGL  A NG+VWL+NGW  FAEHY LE GS LV R DG S+FHT+IF   GSE
Subjt:  PPHFFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSE

Query:  IKYFRKIEDF------------EESNDVFSQ-PKEEEKASFTTSLQIRKKMRKEELLFLPIMEPE
        I+Y   ++DF            +ES + F Q  K+ EK SF +S Q  KKMR E   F P MEP+
Subjt:  IKYFRKIEDF------------EESNDVFSQ-PKEEEKASFTTSLQIRKKMRKEELLFLPIMEPE

XP_031743781.1 B3 domain-containing transcription factor VRN1-like [Cucumis sativus]5.0e-3457.25Show/hide
Query:  MASPLSSNIVLHPPHFFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSS
        MASP S   VLH PHFF IIL   L+ +KLMIP+ F+ +YGKFLSN I LK PDG EWKV  T   NG VWLQNGW +F+ HY L+ GS LVFR DGNS+
Subjt:  MASPLSSNIVLHPPHFFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSS

Query:  FHTMIFHTNGSEIKYFRKIEDFEESN--DVFSQPKEEE
        FHT+IF+ N SEI+Y        ESN  +  ++P+ EE
Subjt:  FHTMIFHTNGSEIKYFRKIEDFEESN--DVFSQPKEEE

TrEMBL top hitse value%identityAlignment
A0A6J1BT74 B3 domain-containing transcription factor VRN1-like2.0e-3655.15Show/hide
Query:  PPHFFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSE
        PPHFF ++LQ +++ K+LMIP+ FV +YGKFLS+SI LKLPDG EWKVGL  A NG+VWL+NGW  FAEHY LE GS LV R DG S+FHT+IF   GSE
Subjt:  PPHFFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSE

Query:  IKYFRKIEDF------------EESNDVFSQ-PKEEEKASFTTSLQIRKKMRKEELLFLPIMEPE
        I+Y   ++DF            +ES + F Q  K+ EK SF +S Q  KKMR E   F P MEP+
Subjt:  IKYFRKIEDF------------EESNDVFSQ-PKEEEKASFTTSLQIRKKMRKEELLFLPIMEPE

A0A6J1BTG9 B3 domain-containing transcription factor VRN1-like isoform X14.7e-3855.62Show/hide
Query:  PHFFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEI
        PHFF I++Q NL+ ++LMIP+ FV EYGKFLS+S+ LKLPDGKEWKVGL    NGAVWLQNGW  FAEHY L+ GS LV R D NS+F T+IF  +GSEI
Subjt:  PHFFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEI

Query:  KYFRKIEDF------------EESNDVFSQ-PKEEEKASFTTSLQIRKKMRKEELLFLPIMEPEEGMRI
        +Y  K  DF            +ES ++F Q  K+ EK S  +S Q RKKMR E   F P M P+EG  I
Subjt:  KYFRKIEDF------------EESNDVFSQ-PKEEEKASFTTSLQIRKKMRKEELLFLPIMEPEEGMRI

A0A6J1BU95 B3 domain-containing transcription factor VRN1-like isoform X26.6e-3255.92Show/hide
Query:  MIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEIKYFRKIEDF--------
        MIP+ FV EYGKFLS+S+ LKLPDGKEWKVGL    NGAVWLQNGW  FAEHY L+ GS LV R D NS+F T+IF  +GSEI+Y  K  DF        
Subjt:  MIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEIKYFRKIEDF--------

Query:  ----EESNDVFSQ-PKEEEKASFTTSLQIRKKMRKEELLFLPIMEPEEGMRI
            +ES ++F Q  K+ EK S  +S Q RKKMR E   F P M P+EG  I
Subjt:  ----EESNDVFSQ-PKEEEKASFTTSLQIRKKMRKEELLFLPIMEPEEGMRI

A0A6J1BWP5 B3 domain-containing transcription factor VRN1-like9.2e-4265.25Show/hide
Query:  PLSSNIVLHPPHFFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHT
        PL SNI+L+PP FF I+LQ NL+HKKLMIP+ FV +YGKFLS S+ L+L DG EWK+GLT A NGAVWLQNGW  FAEHYSLEFGS LVFRFDG S+FHT
Subjt:  PLSSNIVLHPPHFFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHT

Query:  MIFHTNGSEIKYFRKIE----DFEESNDVFSQPKEEEKASF
         IF   GSEIKY         DFEE +D  +  K+ EK SF
Subjt:  MIFHTNGSEIKYFRKIE----DFEESNDVFSQPKEEEKASF

A0A6J1KQQ1 B3 domain-containing transcription factor VRN1-like isoform X11.9e-3151.95Show/hide
Query:  PHFFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEI
        P FF I+L  NL+ +KLMIP+ FV +YG+ LS S+ LKLPDG EWKVGLT A NG VWLQNGW +FAEHYSLEFGS LVF+ DG S+F T IF  +G E 
Subjt:  PHFFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEI

Query:  KYF---------RKIEDFEESNDVFSQP----KEEEKASFTTSLQIRKKMRKEE
        +Y            +ED +   +  S P    K +  AS  +  Q RKKM+ EE
Subjt:  KYF---------RKIEDFEESNDVFSQP----KEEEKASFTTSLQIRKKMRKEE

SwissProt top hitse value%identityAlignment
Q10GM4 B3 domain-containing protein Os03g06221006.9e-1030.59Show/hide
Query:  KKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSE
        + +++P  F   +   +S  ++LK P GK W +G+  ++ G + L++GW +F +   ++    L+FR+ G SSF  +IF  +G E
Subjt:  KKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSE

Q84R27 B3 domain-containing protein At3g189603.3e-1237Show/hide
Query:  FFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEIKY
        FF ++L   ++ K + IP  FV   G  LS  ++L+ P G +  + L R     +W   GW +FAE +S+E G FL+F +  NSSF  +IF+ +  E KY
Subjt:  FFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEIKY

Q8L3W1 B3 domain-containing transcription factor VRN17.3e-2041.18Show/hide
Query:  PHFFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEI
        P F  +I    +Q K+L +P+ FV ++   LS +++L +PDG  W+VGL +A+N  +W Q+GW +F + YS+  G  L+FR++GNS+F   IF+ + SEI
Subjt:  PHFFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEI

Query:  KY
         Y
Subjt:  KY

Q9XIB4 B3 domain-containing protein At1g494758.1e-1130.5Show/hide
Query:  FFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEIKY
        F  IIL   +  K + +P  FV  +G  L+++++L+ P G +  + + R     VW + GW +FAE +SL  G FL F ++G+S F  +IF  + SEI+Y
Subjt:  FFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEIKY

Query:  FRKIEDFEESNDVFSQPKEEEKASFTTSLQIRKKMRKEELL
           ++D +++ +      E+    F +S    + +  +ELL
Subjt:  FRKIEDFEESNDVFSQPKEEEKASFTTSLQIRKKMRKEELL

Q9ZSH7 B3 domain-containing protein At4g015801.1e-1030.13Show/hide
Query:  FFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEIKY
        FF ++L   ++ K + IP  FV   G  LS  ++L  P G +  + L R     +W   GW +FAE +S+E G FL+F +  NSSF  +IF+ +  E  Y
Subjt:  FFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEIKY

Query:  -FRKIEDFEESNDVFSQPKEEEKASFTTSLQIRKKMRKEELLFLPIMEPEEGMRIL
            +   +  +DV     +E    F T  + + K R  ++ F  I+   + M++L
Subjt:  -FRKIEDFEESNDVFSQPKEEEKASFTTSLQIRKKMRKEELLFLPIMEPEEGMRIL

Arabidopsis top hitse value%identityAlignment
AT1G49475.1 AP2/B3-like transcriptional factor family protein5.8e-1230.5Show/hide
Query:  FFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEIKY
        F  IIL   +  K + +P  FV  +G  L+++++L+ P G +  + + R     VW + GW +FAE +SL  G FL F ++G+S F  +IF  + SEI+Y
Subjt:  FFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEIKY

Query:  FRKIEDFEESNDVFSQPKEEEKASFTTSLQIRKKMRKEELL
           ++D +++ +      E+    F +S    + +  +ELL
Subjt:  FRKIEDFEESNDVFSQPKEEEKASFTTSLQIRKKMRKEELL

AT3G18960.1 AP2/B3-like transcriptional factor family protein2.3e-1337Show/hide
Query:  FFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEIKY
        FF ++L   ++ K + IP  FV   G  LS  ++L+ P G +  + L R     +W   GW +FAE +S+E G FL+F +  NSSF  +IF+ +  E KY
Subjt:  FFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEIKY

AT3G18990.1 AP2/B3-like transcriptional factor family protein5.2e-2141.18Show/hide
Query:  PHFFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEI
        P F  +I    +Q K+L +P+ FV ++   LS +++L +PDG  W+VGL +A+N  +W Q+GW +F + YS+  G  L+FR++GNS+F   IF+ + SEI
Subjt:  PHFFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEI

Query:  KY
         Y
Subjt:  KY

AT4G01580.1 AP2/B3-like transcriptional factor family protein7.5e-1230.13Show/hide
Query:  FFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEIKY
        FF ++L   ++ K + IP  FV   G  LS  ++L  P G +  + L R     +W   GW +FAE +S+E G FL+F +  NSSF  +IF+ +  E  Y
Subjt:  FFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNGSEIKY

Query:  -FRKIEDFEESNDVFSQPKEEEKASFTTSLQIRKKMRKEELLFLPIMEPEEGMRIL
            +   +  +DV     +E    F T  + + K R  ++ F  I+   + M++L
Subjt:  -FRKIEDFEESNDVFSQPKEEEKASFTTSLQIRKKMRKEELLFLPIMEPEEGMRIL

AT4G33280.1 AP2/B3-like transcriptional factor family protein1.0e-0833.75Show/hide
Query:  HKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIF
        H +L+IP  F     + L   ++LK P G  + VG+   +   +  + GWD+F + +SLE    LVF+F G S F  ++F
Subjt:  HKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTCCTCTTTCTTCTAATATAGTTTTACATCCTCCTCACTTTTTCACCATCATTTTGCAGATAAATCTTCAACACAAAAAGCTGATGATTCCAGAGAGTTTCGT
CGGAGAATATGGAAAGTTTCTGTCAAATTCTATAAGTCTGAAGCTTCCCGATGGCAAGGAATGGAAAGTCGGGTTGACGAGGGCTGAAAACGGCGCCGTTTGGCTGCAAA
ATGGATGGGATCAGTTTGCGGAGCATTACAGTTTGGAGTTTGGTTCGTTCTTGGTTTTCAGATTCGATGGAAATTCTAGTTTTCACACGATGATATTCCACACGAATGGA
TCGGAGATAAAATATTTTCGCAAAATTGAGGATTTTGAAGAGTCAAATGATGTTTTTTCACAACCAAAAGAAGAGGAGAAGGCTTCATTTACGACCTCTTTGCAAATTCG
TAAGAAGATGAGAAAGGAAGAGTTATTATTTTTGCCTATAATGGAACCTGAAGAAGGTATGAGAATTTTGAATACCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCTCCTCTTTCTTCTAATATAGTTTTACATCCTCCTCACTTTTTCACCATCATTTTGCAGATAAATCTTCAACACAAAAAGCTGATGATTCCAGAGAGTTTCGT
CGGAGAATATGGAAAGTTTCTGTCAAATTCTATAAGTCTGAAGCTTCCCGATGGCAAGGAATGGAAAGTCGGGTTGACGAGGGCTGAAAACGGCGCCGTTTGGCTGCAAA
ATGGATGGGATCAGTTTGCGGAGCATTACAGTTTGGAGTTTGGTTCGTTCTTGGTTTTCAGATTCGATGGAAATTCTAGTTTTCACACGATGATATTCCACACGAATGGA
TCGGAGATAAAATATTTTCGCAAAATTGAGGATTTTGAAGAGTCAAATGATGTTTTTTCACAACCAAAAGAAGAGGAGAAGGCTTCATTTACGACCTCTTTGCAAATTCG
TAAGAAGATGAGAAAGGAAGAGTTATTATTTTTGCCTATAATGGAACCTGAAGAAGGTATGAGAATTTTGAATACCTAG
Protein sequenceShow/hide protein sequence
MASPLSSNIVLHPPHFFTIILQINLQHKKLMIPESFVGEYGKFLSNSISLKLPDGKEWKVGLTRAENGAVWLQNGWDQFAEHYSLEFGSFLVFRFDGNSSFHTMIFHTNG
SEIKYFRKIEDFEESNDVFSQPKEEEKASFTTSLQIRKKMRKEELLFLPIMEPEEGMRILNT