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Lag0013077 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0013077
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr1:47203142..47203660
RNA-Seq ExpressionLag0013077
SyntenyLag0013077
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_006471930.1 uncharacterized protein LOC102617744 [Citrus sinensis]4.0e-0734.11Show/hide
Query:  MNSDAAWFDKDDVGGISWVIRDSDGSPIAVGLKHFSRKLQIKSMEAYAIWEGLSNIHRKFKENHPHLIVESDAMDVIDLLKGKKEDLSELKNVTDAISSL
        +N DAA   KD   G+  V+RDS+G  +A G+K  S +  +   EA AI  GL       K     LIVE+D  DV +L+   K   SE+  +   I + 
Subjt:  MNSDAAWFDKDDVGGISWVIRDSDGSPIAVGLKHFSRKLQIKSMEAYAIWEGLSNIHRKFKENHPHLIVESDAMDVIDLLKGKKEDLSELKNVTDAISSL

Query:  CNEMGKVEFHHCPRLQNSVAHHSSRFASR
          E  ++ F+  PR  N+ AH  ++ A R
Subjt:  CNEMGKVEFHHCPRLQNSVAHHSSRFASR

XP_006491472.1 uncharacterized protein LOC102626455 [Citrus sinensis]1.1e-0732.56Show/hide
Query:  MNSDAAWFDKDDVGGISWVIRDSDGSPIAVGLKHFSRKLQIKSMEAYAIWEGLSNIHRKFKENHPHLIVESDAMDVIDLLKGKKEDLSELKNVTDAISSL
        +N DAA   KD   G+  ++RD++G  +AVG+K    + ++   EA AI  GL   ++    +   LIVESD  +V++LL   K   +E+  +   +   
Subjt:  MNSDAAWFDKDDVGGISWVIRDSDGSPIAVGLKHFSRKLQIKSMEAYAIWEGLSNIHRKFKENHPHLIVESDAMDVIDLLKGKKEDLSELKNVTDAISSL

Query:  CNEMGKVEFHHCPRLQNSVAHHSSRFASR
          E  +V+F   PR  N+ AH  ++FA R
Subjt:  CNEMGKVEFHHCPRLQNSVAHHSSRFASR

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]4.0e-0732.03Show/hide
Query:  MNSDAAWFDKDDVGGISWVIRDSDGSPIAVGLKHFSRKLQIKSMEAYAIWEGLSNIHRKFKENHPHLI-VESDAMDVIDLLKGKKEDLSELKNVTDAISS
        +N++AAW    + GGI W++RD  G  I    +    +  I  +E  AI EGL    R  ++ H   I +ESD+++ I LL  + +D +E+  + + I  
Subjt:  MNSDAAWFDKDDVGGISWVIRDSDGSPIAVGLKHFSRKLQIKSMEAYAIWEGLSNIHRKFKENHPHLI-VESDAMDVIDLLKGKKEDLSELKNVTDAISS

Query:  LCNEMGKVEFHHCPRLQNSVAHHSSRFA
        +  +M  V   H  R  N VAH  +R A
Subjt:  LCNEMGKVEFHHCPRLQNSVAHHSSRFA

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.5e-0931.87Show/hide
Query:  MNSDAAWFDKDDVGGISWVIRDSDGSPIAVGLKHFSRKLQIKSMEAYAIWEGLSNIHRKFKENHPHLIVESDAMDVIDLLKGKKEDLSELKNVTDAISSL
        +N+DA+W D    GGI W+IR  DG  +  G +       +K +EA AI EGL N+         H  +E+D+ +V  LL  K+EDL++   V + I +L
Subjt:  MNSDAAWFDKDDVGGISWVIRDSDGSPIAVGLKHFSRKLQIKSMEAYAIWEGLSNIHRKFKENHPHLIVESDAMDVIDLLKGKKEDLSELKNVTDAISSL

Query:  CNEMGKVEFHHCPRLQNSVAHHSSRFASRYFCLRDQDLSPSRDEVSVFWHPVFPSWFNAL
         +    + F    R  N  AH     A R   LR+          S+ W   FP+W + L
Subjt:  CNEMGKVEFHHCPRLQNSVAHHSSRFASRYFCLRDQDLSPSRDEVSVFWHPVFPSWFNAL

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.1e-0732.58Show/hide
Query:  MNSDAAWFDKDDVGGISWVIRDSDGSPIAVGLKHFSRKLQIKSMEAYAIWEGLSNIH----RKFKENHPHLI-VESDAMDVIDLLKGKKEDLSELKNVTD
        +N+DAAW    + GGI W++RD  G  I    +    +  I  +E  AI EGL  I     R  ++ H   I +ESD+++ I LL  + +D +E+  + +
Subjt:  MNSDAAWFDKDDVGGISWVIRDSDGSPIAVGLKHFSRKLQIKSMEAYAIWEGLSNIH----RKFKENHPHLI-VESDAMDVIDLLKGKKEDLSELKNVTD

Query:  AISSLCNEMGKVEFHHCPRLQNSVAHHSSRFA
         I  +  +M  V   H  R  N VAH  +R A
Subjt:  AISSLCNEMGKVEFHHCPRLQNSVAHHSSRFA

TrEMBL top hitse value%identityAlignment
A0A392M5F5 Ribonuclease H protein (Fragment)7.4e-0731.75Show/hide
Query:  NSDAAWFDKDDVGGISWVIRDSDGSPIAVGLKHFSRKLQIKSMEAYAIWEGLSNIHRKFKENHPHLIVESDAMDVIDLLKGKKEDLSELKNVTDAISSLC
        N DA++FD  D  G  W +RD  G  I  G      +L     EA A+ E +S +    +  + H+I+ESD+  VI+ +  ++   SE  N+   I SL 
Subjt:  NSDAAWFDKDDVGGISWVIRDSDGSPIAVGLKHFSRKLQIKSMEAYAIWEGLSNIHRKFKENHPHLIVESDAMDVIDLLKGKKEDLSELKNVTDAISSLC

Query:  NEMGKVEFHHCPRLQNSVAHHSSRFA
          +   E     R  N+VAH  +R A
Subjt:  NEMGKVEFHHCPRLQNSVAHHSSRFA

A0A6J1CP26 uncharacterized protein LOC1110134121.9e-0732.03Show/hide
Query:  MNSDAAWFDKDDVGGISWVIRDSDGSPIAVGLKHFSRKLQIKSMEAYAIWEGLSNIHRKFKENHPHLI-VESDAMDVIDLLKGKKEDLSELKNVTDAISS
        +N++AAW    + GGI W++RD  G  I    +    +  I  +E  AI EGL    R  ++ H   I +ESD+++ I LL  + +D +E+  + + I  
Subjt:  MNSDAAWFDKDDVGGISWVIRDSDGSPIAVGLKHFSRKLQIKSMEAYAIWEGLSNIHRKFKENHPHLI-VESDAMDVIDLLKGKKEDLSELKNVTDAISS

Query:  LCNEMGKVEFHHCPRLQNSVAHHSSRFA
        +  +M  V   H  R  N VAH  +R A
Subjt:  LCNEMGKVEFHHCPRLQNSVAHHSSRFA

A0A6J1DNV9 uncharacterized protein LOC1110224037.1e-1031.87Show/hide
Query:  MNSDAAWFDKDDVGGISWVIRDSDGSPIAVGLKHFSRKLQIKSMEAYAIWEGLSNIHRKFKENHPHLIVESDAMDVIDLLKGKKEDLSELKNVTDAISSL
        +N+DA+W D    GGI W+IR  DG  +  G +       +K +EA AI EGL N+         H  +E+D+ +V  LL  K+EDL++   V + I +L
Subjt:  MNSDAAWFDKDDVGGISWVIRDSDGSPIAVGLKHFSRKLQIKSMEAYAIWEGLSNIHRKFKENHPHLIVESDAMDVIDLLKGKKEDLSELKNVTDAISSL

Query:  CNEMGKVEFHHCPRLQNSVAHHSSRFASRYFCLRDQDLSPSRDEVSVFWHPVFPSWFNAL
         +    + F    R  N  AH     A R   LR+          S+ W   FP+W + L
Subjt:  CNEMGKVEFHHCPRLQNSVAHHSSRFASRYFCLRDQDLSPSRDEVSVFWHPVFPSWFNAL

A0A6J1DSV1 uncharacterized protein LOC1110236085.1e-0832.58Show/hide
Query:  MNSDAAWFDKDDVGGISWVIRDSDGSPIAVGLKHFSRKLQIKSMEAYAIWEGLSNIH----RKFKENHPHLI-VESDAMDVIDLLKGKKEDLSELKNVTD
        +N+DAAW    + GGI W++RD  G  I    +    +  I  +E  AI EGL  I     R  ++ H   I +ESD+++ I LL  + +D +E+  + +
Subjt:  MNSDAAWFDKDDVGGISWVIRDSDGSPIAVGLKHFSRKLQIKSMEAYAIWEGLSNIH----RKFKENHPHLI-VESDAMDVIDLLKGKKEDLSELKNVTD

Query:  AISSLCNEMGKVEFHHCPRLQNSVAHHSSRFA
         I  +  +M  V   H  R  N VAH  +R A
Subjt:  AISSLCNEMGKVEFHHCPRLQNSVAHHSSRFA

A0A6J5UAY2 Reverse transcriptase domain-containing protein2.5e-0730.06Show/hide
Query:  MNSDAAWFDKDDVGGISWVIRDSDGSPIAVGLKHFSRKLQIKSMEAYAIWEGLSNIHRKFKENHPHLIVESDAMDVIDLLKGKKEDLSELKNVTDAISSL
        +N DAAW  +  +GG+ WV+RDSDG  +  G K   R     +MEA AI E L       +     L VESD++ VI ++ G+      +  +   I  L
Subjt:  MNSDAAWFDKDDVGGISWVIRDSDGSPIAVGLKHFSRKLQIKSMEAYAIWEGLSNIHRKFKENHPHLIVESDAMDVIDLLKGKKEDLSELKNVTDAISSL

Query:  CNEMGKVEFHHCPRLQNSVAHHSSRFASRYFCLRDQDLSPSRDEVSVFWHPVFPSW-FNALLS
          +     F + PR  N  AH  + F SR   +               W  ++P W F+ L+S
Subjt:  CNEMGKVEFHHCPRLQNSVAHHSSRFASRYFCLRDQDLSPSRDEVSVFWHPVFPSW-FNALLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G52990.1 thioredoxin family protein4.0e-0530Show/hide
Query:  NSDAAWFDKDDVGGISWVIRDSDGSPIAVGLKHFSRKLQIKSMEAYA-IWEGLSNIHRKFKENHPHLIVESDAMDVIDLLKGKKEDLSELKNVTDAISSL
        N DA+  + D V G+ W+IR+S G+ +  G+  F  ++  +  E  A IW     I       +  +I E D  +V  L+   K D   LK+  D I S 
Subjt:  NSDAAWFDKDDVGGISWVIRDSDGSPIAVGLKHFSRKLQIKSMEAYA-IWEGLSNIHRKFKENHPHLIVESDAMDVIDLLKGKKEDLSELKNVTDAISSL

Query:  CNEMGKVEFHHCPRLQNSVA
               EF    R QN  A
Subjt:  CNEMGKVEFHHCPRLQNSVA

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein8.1e-0625.83Show/hide
Query:  NSDAAWFDKDDVGGISWVIRDSDGSPIAVGLKHFSRKLQIKSME-AYAIWEGLSNIHRKFKENHPHLIVESDAMDVIDLLKGKKEDLSELKNVTDAISSL
        N DA+  +++ V G+ W++R+S G+ I  G+  F  ++  +  E +  IW     I   +   H  +I E D   +  ++  K  +   L++  D I S 
Subjt:  NSDAAWFDKDDVGGISWVIRDSDGSPIAVGLKHFSRKLQIKSME-AYAIWEGLSNIHRKFKENHPHLIVESDAMDVIDLLKGKKEDLSELKNVTDAISSL

Query:  CNEMGKVEFHHCPRLQNSVA
              +EF    R QN  A
Subjt:  CNEMGKVEFHHCPRLQNSVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTCTGACGCAGCCTGGTTCGATAAAGACGACGTGGGAGGTATTAGCTGGGTAATTCGTGATTCAGACGGATCCCCGATTGCAGTTGGGCTGAAACACTTTAGCAG
GAAATTGCAAATCAAATCGATGGAAGCTTATGCGATCTGGGAAGGCCTATCAAACATCCATCGAAAATTCAAGGAGAATCATCCTCACCTGATCGTGGAGTCCGACGCCA
TGGATGTAATCGATCTGCTTAAAGGGAAGAAGGAAGATCTTTCGGAGCTAAAAAATGTGACTGACGCCATCTCTTCCCTCTGTAACGAAATGGGCAAAGTAGAATTTCAT
CATTGCCCTAGGCTACAAAATTCAGTAGCCCACCATTCATCTCGTTTTGCTTCGAGATACTTTTGTTTGCGGGACCAGGATCTCTCTCCCTCGCGGGATGAAGTTTCTGT
TTTTTGGCATCCTGTTTTCCCCTCCTGGTTTAATGCCCTTCTTTCTAAGGGTAGTTGTAACGTTTCTTTCCCCCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATTCTGACGCAGCCTGGTTCGATAAAGACGACGTGGGAGGTATTAGCTGGGTAATTCGTGATTCAGACGGATCCCCGATTGCAGTTGGGCTGAAACACTTTAGCAG
GAAATTGCAAATCAAATCGATGGAAGCTTATGCGATCTGGGAAGGCCTATCAAACATCCATCGAAAATTCAAGGAGAATCATCCTCACCTGATCGTGGAGTCCGACGCCA
TGGATGTAATCGATCTGCTTAAAGGGAAGAAGGAAGATCTTTCGGAGCTAAAAAATGTGACTGACGCCATCTCTTCCCTCTGTAACGAAATGGGCAAAGTAGAATTTCAT
CATTGCCCTAGGCTACAAAATTCAGTAGCCCACCATTCATCTCGTTTTGCTTCGAGATACTTTTGTTTGCGGGACCAGGATCTCTCTCCCTCGCGGGATGAAGTTTCTGT
TTTTTGGCATCCTGTTTTCCCCTCCTGGTTTAATGCCCTTCTTTCTAAGGGTAGTTGTAACGTTTCTTTCCCCCTTTAA
Protein sequenceShow/hide protein sequence
MNSDAAWFDKDDVGGISWVIRDSDGSPIAVGLKHFSRKLQIKSMEAYAIWEGLSNIHRKFKENHPHLIVESDAMDVIDLLKGKKEDLSELKNVTDAISSLCNEMGKVEFH
HCPRLQNSVAHHSSRFASRYFCLRDQDLSPSRDEVSVFWHPVFPSWFNALLSKGSCNVSFPL