; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0013124 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0013124
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionSWIM-type domain-containing protein
Genome locationchr1:47665197..47666002
RNA-Seq ExpressionLag0013124
SyntenyLag0013124
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR004332 - Transposase, MuDR, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039579.1 protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa]1.2e-4939.63Show/hide
Query:  VGLLNVVVLFNGRWDENNRYNRFKSDSVPVPEGCTIPEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIRITDDRDVTWFILTC-------ICVVAD-
        + L  V  +F+GRW E+ RY  ++   V VP   +  EF  CI+ ++FP+ E  ++RLT+Y    N S +IRI DD+DV+W +L         + +V D 
Subjt:  VGLLNVVVLFNGRWDENNRYNRFKSDSVPVPEGCTIPEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIRITDDRDVTWFILTC-------ICVVAD-

Query:  -------HSEHHQTIINYVDDEGSVSVMED----------------SVFQDKDQLRKAIHLLALRNSFQLRTIKSNQKSFVVECKDVSCCWYIRASRHLD
               ++ +  + +   +D  + +V+ D                S+F+ K  L+KAI++LAL +SF+L T+ SN+ SF + CKD +C WY+ AS    
Subjt:  -------HSEHHQTIINYVDDEGSVSVMED----------------SVFQDKDQLRKAIHLLALRNSFQLRTIKSNQKSFVVECKDVSCCWYIRASRHLD

Query:  GGLWMVRKFVDKHECPLDMVKNDHMQATTWLVGECVKSFLKVNDKVQCRPRDVINYMRRKHDVNISYDKA
          +W+VRKF D H C +D+VKNDH QAT+ +V EC K   K+NDK  CRP DVINYM+  H VN+SYDKA
Subjt:  GGLWMVRKFVDKHECPLDMVKNDHMQATTWLVGECVKSFLKVNDKVQCRPRDVINYMRRKHDVNISYDKA

KAA0064137.1 MuDRA-like transposase [Cucumis melo var. makuwa]3.7e-4638.15Show/hide
Query:  VGLLNVVVLFNGRWDENNRYNRFKSDSVPVPEGCTIPEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIRITDDRDVTWFILTC-------ICVVAD-
        + L  V  +F+ RW E+ RY  ++   V VP   +  EF  CI+ ++FP+ E  ++RLT+Y    N S +I I DD+DV+W +L         + +V D 
Subjt:  VGLLNVVVLFNGRWDENNRYNRFKSDSVPVPEGCTIPEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIRITDDRDVTWFILTC-------ICVVAD-

Query:  -------HSEHHQTIINYVDDEGSVSVMED----------------SVFQDKDQLRKAIHLLALRNSFQLRTIKSNQKSFVVECKDVSCCWYIRASRHLD
               ++ +  + +   +D  S +++ D                S+F+ K  L+KAI++LAL +SF+L T++SN+ SF + CKD +C WY+RA     
Subjt:  -------HSEHHQTIINYVDDEGSVSVMED----------------SVFQDKDQLRKAIHLLALRNSFQLRTIKSNQKSFVVECKDVSCCWYIRASRHLD

Query:  GGLWMVRKFVDKHECPLDMVKNDHMQATTWLVGECVKSFLKVNDKVQCRPRDVINYMRRKHDVNISYDKA
          ++  RKF D H C +D+VKNDH QAT+W+V EC K   K+NDK  C P +VINYM+  HDVN+SYDKA
Subjt:  GGLWMVRKFVDKHECPLDMVKNDHMQATTWLVGECVKSFLKVNDKVQCRPRDVINYMRRKHDVNISYDKA

KAA0067552.1 protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa]1.7e-5140.74Show/hide
Query:  VGLLNVVVLFNGRWDENNRYNRFKSDSVPVPEGCTIPEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIRITDDRDVTWFILTC-------ICVVAD-
        + L  V  +F+GRW E+ RY  ++   V VP   +  EF  CI+ ++FP+ E  I  LT+Y    N S +IRI DD+DV+W +L         + +V D 
Subjt:  VGLLNVVVLFNGRWDENNRYNRFKSDSVPVPEGCTIPEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIRITDDRDVTWFILTC-------ICVVAD-

Query:  -------HSEHHQTIINYVDDEGSVSVMED----------------SVFQDKDQLRKAIHLLALRNSFQLRTIKSNQKSFVVECKDVSCCWYIRASRHLD
               ++ +  + +   +D  + +V+ D                S+F+ K  L+KAI++LAL +SF+L T++SN+ SF + CKD SC WY+RAS    
Subjt:  -------HSEHHQTIINYVDDEGSVSVMED----------------SVFQDKDQLRKAIHLLALRNSFQLRTIKSNQKSFVVECKDVSCCWYIRASRHLD

Query:  GGLWMVRKFVDKHECPLDMVKNDHMQATTWLVGECVKSFLKVNDKVQCRPRDVINYMRRKHDVNISYDKA
          +W++RKF D H C +D+VKNDH QAT+W+V EC K   K NDK  CRP DVINYM+  H VNISYDKA
Subjt:  GGLWMVRKFVDKHECPLDMVKNDHMQATTWLVGECVKSFLKVNDKVQCRPRDVINYMRRKHDVNISYDKA

XP_008455803.1 PREDICTED: uncharacterized protein LOC103495899 [Cucumis melo]3.0e-4042.99Show/hide
Query:  RLTMYKNGINKSNIIRITDDRDVTWFILTC-------ICVVAD--------HSEHHQTIINYVDDEGSVSVMED----------------SVFQDKDQLR
        +LT+Y    N S +IRI DD+DV+W +L         + VV D        ++ +  + +   +D  + +V+ D                S+F+ K  L+
Subjt:  RLTMYKNGINKSNIIRITDDRDVTWFILTC-------ICVVAD--------HSEHHQTIINYVDDEGSVSVMED----------------SVFQDKDQLR

Query:  KAIHLLALRNSFQLRTIKSNQKSFVVECKDVSCCWYIRASRHLDGGLWMVRKFVDKHECPLDMVKNDHMQATTWLVGECVKSFLKVNDKVQCRPRDVINY
        KAI++LAL +SF+L T++SN+ SF + CKD SC WY+RAS      +W+VRKF+  H C +D+VKNDH QAT+W+V EC K   K NDKV CRP DVINY
Subjt:  KAIHLLALRNSFQLRTIKSNQKSFVVECKDVSCCWYIRASRHLDGGLWMVRKFVDKHECPLDMVKNDHMQATTWLVGECVKSFLKVNDKVQCRPRDVINY

Query:  MRRKHDVNISYDKA
        M+  H VNISYDKA
Subjt:  MRRKHDVNISYDKA

XP_038887125.1 uncharacterized protein LOC120077310 [Benincasa hispida]1.7e-4339.42Show/hide
Query:  LLNVVVLFNGRWDENNRYNRFKSDSVPVPEGCTIPEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIRITDDRDVTWFILTC-------ICVVADH--
        L  V +LFNGRWDEN++Y+ F+     +P   +  +F E I+ K+FPSGE  I+RL MY  G + SN+I I +D+ + W +L         +CVV DH  
Subjt:  LLNVVVLFNGRWDENNRYNRFKSDSVPVPEGCTIPEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIRITDDRDVTWFILTC-------ICVVADH--

Query:  ---------------------SEHHQTIINYVDDEGSVSVMEDSV-------FQDKDQLRKAIHLLALRNSFQLRTIKSNQKSFVVECKDVSCCWYIRAS
                             S  H    N + D     V +  +       F  K  L+KAI+ LAL+NSF+L T +SN+ SF + CKD+SC WY+RAS
Subjt:  ---------------------SEHHQTIINYVDDEGSVSVMEDSV-------FQDKDQLRKAIHLLALRNSFQLRTIKSNQKSFVVECKDVSCCWYIRAS

Query:  RHLDGGLWMVRKFVDKHECPLDMVKNDHMQATTWLVGECVK
         +  GG+W+V+KF+D H+C +D+VK+ H QAT+W+V EC K
Subjt:  RHLDGGLWMVRKFVDKHECPLDMVKNDHMQATTWLVGECVK

TrEMBL top hitse value%identityAlignment
A0A1S3C300 uncharacterized protein LOC1034958991.5e-4042.99Show/hide
Query:  RLTMYKNGINKSNIIRITDDRDVTWFILTC-------ICVVAD--------HSEHHQTIINYVDDEGSVSVMED----------------SVFQDKDQLR
        +LT+Y    N S +IRI DD+DV+W +L         + VV D        ++ +  + +   +D  + +V+ D                S+F+ K  L+
Subjt:  RLTMYKNGINKSNIIRITDDRDVTWFILTC-------ICVVAD--------HSEHHQTIINYVDDEGSVSVMED----------------SVFQDKDQLR

Query:  KAIHLLALRNSFQLRTIKSNQKSFVVECKDVSCCWYIRASRHLDGGLWMVRKFVDKHECPLDMVKNDHMQATTWLVGECVKSFLKVNDKVQCRPRDVINY
        KAI++LAL +SF+L T++SN+ SF + CKD SC WY+RAS      +W+VRKF+  H C +D+VKNDH QAT+W+V EC K   K NDKV CRP DVINY
Subjt:  KAIHLLALRNSFQLRTIKSNQKSFVVECKDVSCCWYIRASRHLDGGLWMVRKFVDKHECPLDMVKNDHMQATTWLVGECVKSFLKVNDKVQCRPRDVINY

Query:  MRRKHDVNISYDKA
        M+  H VNISYDKA
Subjt:  MRRKHDVNISYDKA

A0A5A7TEC9 Protein FAR1-RELATED SEQUENCE 2-like5.9e-5039.63Show/hide
Query:  VGLLNVVVLFNGRWDENNRYNRFKSDSVPVPEGCTIPEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIRITDDRDVTWFILTC-------ICVVAD-
        + L  V  +F+GRW E+ RY  ++   V VP   +  EF  CI+ ++FP+ E  ++RLT+Y    N S +IRI DD+DV+W +L         + +V D 
Subjt:  VGLLNVVVLFNGRWDENNRYNRFKSDSVPVPEGCTIPEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIRITDDRDVTWFILTC-------ICVVAD-

Query:  -------HSEHHQTIINYVDDEGSVSVMED----------------SVFQDKDQLRKAIHLLALRNSFQLRTIKSNQKSFVVECKDVSCCWYIRASRHLD
               ++ +  + +   +D  + +V+ D                S+F+ K  L+KAI++LAL +SF+L T+ SN+ SF + CKD +C WY+ AS    
Subjt:  -------HSEHHQTIINYVDDEGSVSVMED----------------SVFQDKDQLRKAIHLLALRNSFQLRTIKSNQKSFVVECKDVSCCWYIRASRHLD

Query:  GGLWMVRKFVDKHECPLDMVKNDHMQATTWLVGECVKSFLKVNDKVQCRPRDVINYMRRKHDVNISYDKA
          +W+VRKF D H C +D+VKNDH QAT+ +V EC K   K+NDK  CRP DVINYM+  H VN+SYDKA
Subjt:  GGLWMVRKFVDKHECPLDMVKNDHMQATTWLVGECVKSFLKVNDKVQCRPRDVINYMRRKHDVNISYDKA

A0A5A7V1Z6 CCHC-type domain-containing protein6.7e-3842.29Show/hide
Query:  IIRITDDRDVTWFILTC-------ICVVAD--------HSEHHQTIINYVDDEGSVSVMED----------------SVFQDKDQLRKAIHLLALRNSFQ
        +IRI DD+DV+W +L         + +V D        ++ +  + +   +D  + +V+ D                S+F  K  L+K+I++LAL +SF+
Subjt:  IIRITDDRDVTWFILTC-------ICVVAD--------HSEHHQTIINYVDDEGSVSVMED----------------SVFQDKDQLRKAIHLLALRNSFQ

Query:  LRTIKSNQKSFVVECKDVSCCWYIRASRHLDGGLWMVRKFVDKHECPLDMVKNDHMQATTWLVGECVKSFLKVNDKVQCRPRDVINYMRRKHDVNISYDK
        L T++SN+ SF + CKD SC WY+RAS      +W+VRKF D H C +D+VKNDH QAT+W+V EC K   K+NDK  CRP DVINYM+  H VNISYDK
Subjt:  LRTIKSNQKSFVVECKDVSCCWYIRASRHLDGGLWMVRKFVDKHECPLDMVKNDHMQATTWLVGECVKSFLKVNDKVQCRPRDVINYMRRKHDVNISYDK

Query:  A
        A
Subjt:  A

A0A5A7VAU3 MuDRA-like transposase1.8e-4638.15Show/hide
Query:  VGLLNVVVLFNGRWDENNRYNRFKSDSVPVPEGCTIPEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIRITDDRDVTWFILTC-------ICVVAD-
        + L  V  +F+ RW E+ RY  ++   V VP   +  EF  CI+ ++FP+ E  ++RLT+Y    N S +I I DD+DV+W +L         + +V D 
Subjt:  VGLLNVVVLFNGRWDENNRYNRFKSDSVPVPEGCTIPEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIRITDDRDVTWFILTC-------ICVVAD-

Query:  -------HSEHHQTIINYVDDEGSVSVMED----------------SVFQDKDQLRKAIHLLALRNSFQLRTIKSNQKSFVVECKDVSCCWYIRASRHLD
               ++ +  + +   +D  S +++ D                S+F+ K  L+KAI++LAL +SF+L T++SN+ SF + CKD +C WY+RA     
Subjt:  -------HSEHHQTIINYVDDEGSVSVMED----------------SVFQDKDQLRKAIHLLALRNSFQLRTIKSNQKSFVVECKDVSCCWYIRASRHLD

Query:  GGLWMVRKFVDKHECPLDMVKNDHMQATTWLVGECVKSFLKVNDKVQCRPRDVINYMRRKHDVNISYDKA
          ++  RKF D H C +D+VKNDH QAT+W+V EC K   K+NDK  C P +VINYM+  HDVN+SYDKA
Subjt:  GGLWMVRKFVDKHECPLDMVKNDHMQATTWLVGECVKSFLKVNDKVQCRPRDVINYMRRKHDVNISYDKA

A0A5A7VGR4 Protein FAR1-RELATED SEQUENCE 2-like8.2e-5240.74Show/hide
Query:  VGLLNVVVLFNGRWDENNRYNRFKSDSVPVPEGCTIPEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIRITDDRDVTWFILTC-------ICVVAD-
        + L  V  +F+GRW E+ RY  ++   V VP   +  EF  CI+ ++FP+ E  I  LT+Y    N S +IRI DD+DV+W +L         + +V D 
Subjt:  VGLLNVVVLFNGRWDENNRYNRFKSDSVPVPEGCTIPEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIRITDDRDVTWFILTC-------ICVVAD-

Query:  -------HSEHHQTIINYVDDEGSVSVMED----------------SVFQDKDQLRKAIHLLALRNSFQLRTIKSNQKSFVVECKDVSCCWYIRASRHLD
               ++ +  + +   +D  + +V+ D                S+F+ K  L+KAI++LAL +SF+L T++SN+ SF + CKD SC WY+RAS    
Subjt:  -------HSEHHQTIINYVDDEGSVSVMED----------------SVFQDKDQLRKAIHLLALRNSFQLRTIKSNQKSFVVECKDVSCCWYIRASRHLD

Query:  GGLWMVRKFVDKHECPLDMVKNDHMQATTWLVGECVKSFLKVNDKVQCRPRDVINYMRRKHDVNISYDKA
          +W++RKF D H C +D+VKNDH QAT+W+V EC K   K NDK  CRP DVINYM+  H VNISYDKA
Subjt:  GGLWMVRKFVDKHECPLDMVKNDHMQATTWLVGECVKSFLKVNDKVQCRPRDVINYMRRKHDVNISYDKA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACTCCACGCCACCGGTTGGTTTGCTGAATGTGGTGGTTCTATTCAATGGGAGGTGGGATGAAAACAATCGGTACAATAGGTTTAAGTCCGACAGTGTGCCAGTACC
GGAGGGATGCACAATACCAGAGTTCAATGAATGCATCCGGAGCAAGGTATTTCCATCGGGCGAGCACATGATCACTCGGTTAACCATGTACAAGAATGGTATCAACAAGT
CTAATATAATCCGGATCACCGACGATAGAGATGTTACTTGGTTCATTCTAACATGCATATGCGTTGTGGCTGACCATTCAGAACATCACCAAACAATTATTAATTACGTC
GACGATGAAGGATCAGTATCTGTTATGGAAGACTCGGTGTTTCAAGACAAAGACCAGTTAAGGAAAGCAATACACTTGCTTGCGTTAAGAAACAGTTTCCAGCTACGGAC
CATTAAGTCCAACCAGAAATCGTTTGTGGTTGAATGCAAGGACGTTTCGTGTTGTTGGTACATCCGAGCGTCTCGTCATTTGGACGGGGGTTTGTGGATGGTTCGTAAGT
TCGTGGACAAACATGAATGCCCACTAGACATGGTAAAAAATGACCACATGCAAGCAACGACGTGGCTTGTGGGGGAGTGTGTGAAGTCATTTCTAAAAGTAAACGATAAG
GTCCAGTGTCGCCCTCGTGATGTTATTAACTATATGAGGAGGAAACACGATGTCAACATCAGTTATGACAAGGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGCACTCCACGCCACCGGTTGGTTTGCTGAATGTGGTGGTTCTATTCAATGGGAGGTGGGATGAAAACAATCGGTACAATAGGTTTAAGTCCGACAGTGTGCCAGTACC
GGAGGGATGCACAATACCAGAGTTCAATGAATGCATCCGGAGCAAGGTATTTCCATCGGGCGAGCACATGATCACTCGGTTAACCATGTACAAGAATGGTATCAACAAGT
CTAATATAATCCGGATCACCGACGATAGAGATGTTACTTGGTTCATTCTAACATGCATATGCGTTGTGGCTGACCATTCAGAACATCACCAAACAATTATTAATTACGTC
GACGATGAAGGATCAGTATCTGTTATGGAAGACTCGGTGTTTCAAGACAAAGACCAGTTAAGGAAAGCAATACACTTGCTTGCGTTAAGAAACAGTTTCCAGCTACGGAC
CATTAAGTCCAACCAGAAATCGTTTGTGGTTGAATGCAAGGACGTTTCGTGTTGTTGGTACATCCGAGCGTCTCGTCATTTGGACGGGGGTTTGTGGATGGTTCGTAAGT
TCGTGGACAAACATGAATGCCCACTAGACATGGTAAAAAATGACCACATGCAAGCAACGACGTGGCTTGTGGGGGAGTGTGTGAAGTCATTTCTAAAAGTAAACGATAAG
GTCCAGTGTCGCCCTCGTGATGTTATTAACTATATGAGGAGGAAACACGATGTCAACATCAGTTATGACAAGGCATGA
Protein sequenceShow/hide protein sequence
MHSTPPVGLLNVVVLFNGRWDENNRYNRFKSDSVPVPEGCTIPEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIRITDDRDVTWFILTCICVVADHSEHHQTIINYV
DDEGSVSVMEDSVFQDKDQLRKAIHLLALRNSFQLRTIKSNQKSFVVECKDVSCCWYIRASRHLDGGLWMVRKFVDKHECPLDMVKNDHMQATTWLVGECVKSFLKVNDK
VQCRPRDVINYMRRKHDVNISYDKA