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Lag0013225 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0013225
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr1:48531816..48532393
RNA-Seq ExpressionLag0013225
SyntenyLag0013225
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AFP55557.1 non-ltr retroelement reverse transcriptase [Rosa rugosa]3.2e-0635.63Show/hide
Query:  HIILESDCLQAINLITRGEDIRNELGSLVDEIRRRALGFSEINFIHIRRSGNSVADALAKYARRNGSFVIGNNLVPDWLRVLVSNDR
        +I++ESDCL+AI+L+   E      G LV++I+      +  +  H+RR GN+ A A+AK+  RN    +     PDWL  L+ +D+
Subjt:  HIILESDCLQAINLITRGEDIRNELGSLVDEIRRRALGFSEINFIHIRRSGNSVADALAKYARRNGSFVIGNNLVPDWLRVLVSNDR

KAG7633308.1 Ribonuclease H-like superfamily, partial [Arabidopsis suecica]1.2e-0537.65Show/hide
Query:  IILESDCLQAINLITRGEDIRNELGSLVDEIRRRALGFSEINFIHIRRSGNSVADALAKYARRNGSFVIGNNLVPDWLRVLVSND
        +I+E DC    +L+T G    N L +L+D+IR  A  FS + F  +RR GN +A  LAK+   + SF   +  +P WL     ND
Subjt:  IILESDCLQAINLITRGEDIRNELGSLVDEIRRRALGFSEINFIHIRRSGNSVADALAKYARRNGSFVIGNNLVPDWLRVLVSND

XP_030925054.1 uncharacterized protein LOC115952115 [Quercus lobata]1.2e-0536.47Show/hide
Query:  IILESDCLQAINLITRGEDIRNELGSLVDEIRRRALGFSEINFIHIRRSGNSVADALAKYARRNGSFVIGNNLVPDWLRVLVSND
        +I E D    I+ + +G  + +  G++VD+IR     FS   F H+ R+GN VADAL K A  N    +  N +P  + VLV  D
Subjt:  IILESDCLQAINLITRGEDIRNELGSLVDEIRRRALGFSEINFIHIRRSGNSVADALAKYARRNGSFVIGNNLVPDWLRVLVSND

XP_030939704.1 uncharacterized protein LOC115964557 [Quercus lobata]2.1e-0537.21Show/hide
Query:  IILESDCLQAINLITRGEDIRNELGSLVDEIRRRALGFSEINFIHIRRSGNSVADALAKYARRNGSFVIGNNLVPDWLRVLVSNDR
        +ILE D +  I  +       +  G ++D+IR  AL FS I+F H++R GN VAD+LAK A+ +      ++ +P  +  LVS DR
Subjt:  IILESDCLQAINLITRGEDIRNELGSLVDEIRRRALGFSEINFIHIRRSGNSVADALAKYARRNGSFVIGNNLVPDWLRVLVSNDR

XP_042974894.1 uncharacterized protein LOC122306534 [Carya illinoinensis]2.7e-0533.71Show/hide
Query:  SSHIILESDCLQAINLITRGEDIRNELGSLVDEIRRRALGFSEINFIHIRRSGNSVADALAKYARRNGSFVIGNNLVPDWLRVLVSNDR
        +S +++E+DCL  +  +    +   E   ++ EI+R  L F EI+F+H+ R GN+VA  LAKYAR     +   +  P ++   V  DR
Subjt:  SSHIILESDCLQAINLITRGEDIRNELGSLVDEIRRRALGFSEINFIHIRRSGNSVADALAKYARRNGSFVIGNNLVPDWLRVLVSNDR

TrEMBL top hitse value%identityAlignment
A0A2K3LB82 Ribonuclease H (Fragment)6.5e-0536.05Show/hide
Query:  IILESDCLQAINLITRGEDIRNELGSLVDEIRRRALGFSEINFIHIRRSGNSVADALAKYARRNGSFVIGNNLVPDWLRVLVSNDR
        I++ESD L AIN+I  G  I +    LV++I+ +A   +E+ F+H+ R  N VADALAK+       +   ++ PD++   +  DR
Subjt:  IILESDCLQAINLITRGEDIRNELGSLVDEIRRRALGFSEINFIHIRRSGNSVADALAKYARRNGSFVIGNNLVPDWLRVLVSNDR

A0A5S9WYA0 RNase H domain-containing protein5.0e-0537.65Show/hide
Query:  IILESDCLQAINLITRGEDIRNELGSLVDEIRRRALGFSEINFIHIRRSGNSVADALAKYARRNGSFVIGNNLVPDWLRVLVSND
        +I+E DC    NL++ G    N L +L+D+IR  A  FS + F  +RR GN VA  LAK    +  F   +  +P WL     ND
Subjt:  IILESDCLQAINLITRGEDIRNELGSLVDEIRRRALGFSEINFIHIRRSGNSVADALAKYARRNGSFVIGNNLVPDWLRVLVSND

J7G0Q7 Non-ltr retroelement reverse transcriptase1.6e-0635.63Show/hide
Query:  HIILESDCLQAINLITRGEDIRNELGSLVDEIRRRALGFSEINFIHIRRSGNSVADALAKYARRNGSFVIGNNLVPDWLRVLVSNDR
        +I++ESDCL+AI+L+   E      G LV++I+      +  +  H+RR GN+ A A+AK+  RN    +     PDWL  L+ +D+
Subjt:  HIILESDCLQAINLITRGEDIRNELGSLVDEIRRRALGFSEINFIHIRRSGNSVADALAKYARRNGSFVIGNNLVPDWLRVLVSNDR

K3XQQ1 Uncharacterized protein3.8e-0538.1Show/hide
Query:  ILESDCLQAINLITRGEDIRNELGSLVDEIRRRALGFSEINFIHIRRSGNSVADALAKYARRNGSFVIGNNLVPDWLRVLVSND
        +LESDCL AINL+++ E  R+    ++ E  R A G   + F H++R  NSVA  LA+ ARR     +     P  +  LV+ D
Subjt:  ILESDCLQAINLITRGEDIRNELGSLVDEIRRRALGFSEINFIHIRRSGNSVADALAKYARRNGSFVIGNNLVPDWLRVLVSND

Q9ZPU0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.0e-0537.65Show/hide
Query:  IILESDCLQAINLITRGEDIRNELGSLVDEIRRRALGFSEINFIHIRRSGNSVADALAKYARRNGSFVIGNNLVPDWLRVLVSND
        +I+E DC    NL++ G    N L +L+D+IR  A  FS + F  +RR GN VA  LAK    +  F   +  +P WL     ND
Subjt:  IILESDCLQAINLITRGEDIRNELGSLVDEIRRRALGFSEINFIHIRRSGNSVADALAKYARRNGSFVIGNNLVPDWLRVLVSND

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G13980.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.6e-0937.65Show/hide
Query:  IILESDCLQAINLITRGEDIRNELGSLVDEIRRRALGFSEINFIHIRRSGNSVADALAKYARRNGSFVIGNNLVPDWLRVLVSND
        +I+E DC    NL++ G    N L +L+D+IR  A  FS + F  +RR GN VA  LAK    +  F   +  +P WL     ND
Subjt:  IILESDCLQAINLITRGEDIRNELGSLVDEIRRRALGFSEINFIHIRRSGNSVADALAKYARRNGSFVIGNNLVPDWLRVLVSND

AT3G09510.1 Ribonuclease H-like superfamily protein1.4e-0735.63Show/hide
Query:  SHIILESDCLQAINLITRGEDIRNELGSLVDEIRRRALGFSEINFIHIRRSGNSVADALAKYARRNGSFVIGNNLVPDWLRVLVSND
        + + +E DC   INLI  G    + L + +++I   A  F+ I F  IRR GN +A  LAKY     +F  G+  +P WL     ND
Subjt:  SHIILESDCLQAINLITRGEDIRNELGSLVDEIRRRALGFSEINFIHIRRSGNSVADALAKYARRNGSFVIGNNLVPDWLRVLVSND

AT5G42965.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.2e-0437.29Show/hide
Query:  IILESDCLQAINLITRGEDIRNELGSLVDEIRRRALGFSEINFIHIRRSGNSVADALAK
        +I ESD    ++L+    D  N L   + +IR     F E+  +HI+R GNSVAD +A+
Subjt:  IILESDCLQAINLITRGEDIRNELGSLVDEIRRRALGFSEINFIHIRRSGNSVADALAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATTACAGACAGCGGATACGAGGTCGGGGTTGGTCAAAGTTCCCACATGCCCTAAAATTGACCGAACATCACCAATCACGTCATCCCACATTATCCTTGAATCTGA
TTGTCTCCAAGCGATTAATCTAATCACCAGAGGGGAAGACATTCGCAATGAACTAGGATCGTTGGTTGATGAGATTAGGCGGAGAGCTTTGGGGTTTTCCGAAATCAATT
TTATTCATATTCGTAGATCTGGCAACTCGGTTGCAGATGCCTTAGCTAAGTATGCTAGACGTAATGGTAGCTTTGTAATCGGGAACAATCTTGTTCCTGATTGGCTTCGT
GTATTGGTCTCTAATGACCGTTGTTCCGTTGCCCATGTGGCTGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAATTACAGACAGCGGATACGAGGTCGGGGTTGGTCAAAGTTCCCACATGCCCTAAAATTGACCGAACATCACCAATCACGTCATCCCACATTATCCTTGAATCTGA
TTGTCTCCAAGCGATTAATCTAATCACCAGAGGGGAAGACATTCGCAATGAACTAGGATCGTTGGTTGATGAGATTAGGCGGAGAGCTTTGGGGTTTTCCGAAATCAATT
TTATTCATATTCGTAGATCTGGCAACTCGGTTGCAGATGCCTTAGCTAAGTATGCTAGACGTAATGGTAGCTTTGTAATCGGGAACAATCTTGTTCCTGATTGGCTTCGT
GTATTGGTCTCTAATGACCGTTGTTCCGTTGCCCATGTGGCTGAATAA
Protein sequenceShow/hide protein sequence
MKLQTADTRSGLVKVPTCPKIDRTSPITSSHIILESDCLQAINLITRGEDIRNELGSLVDEIRRRALGFSEINFIHIRRSGNSVADALAKYARRNGSFVIGNNLVPDWLR
VLVSNDRCSVAHVAE