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Lag0013246 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0013246
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionzf-RVT domain-containing protein
Genome locationchr1:48715171..48715545
RNA-Seq ExpressionLag0013246
SyntenyLag0013246
Gene Ontology termsGO:0050789 - regulation of biological process (biological process)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN68165.1 hypothetical protein VITISV_008538 [Vitis vinifera]1.1e-0943.42Show/hide
Query:  ALKPKGSFSTKSLIIDMAGTNNLIEPSLAKTIWKENYPKKIKFFLWEVVHKAINTNDVLQRRMPYMSLSPERCSLC
        +L   G F+ KS  + ++  + L      K +W    P KIKFF+W V HK +NTND+LQ R PY +LSP+ C LC
Subjt:  ALKPKGSFSTKSLIIDMAGTNNLIEPSLAKTIWKENYPKKIKFFLWEVVHKAINTNDVLQRRMPYMSLSPERCSLC

RVW31180.1 hypothetical protein CK203_097661 [Vitis vinifera]4.0e-0941.56Show/hide
Query:  LKPKGSFSTKSLIIDMAGTNNLIEPSLAKTIWKENYPKKIKFFLWEVVHKAINTNDVLQRRMPYMSLSPERCSLCKR
        L   G FS KS  + ++ +    +   +K +W    P K+KFF+W V HK +NTND+LQ R PY +LSP+ C LC +
Subjt:  LKPKGSFSTKSLIIDMAGTNNLIEPSLAKTIWKENYPKKIKFFLWEVVHKAINTNDVLQRRMPYMSLSPERCSLCKR

RVW36758.1 hypothetical protein CK203_101571 [Vitis vinifera]2.8e-1038.14Show/hide
Query:  ALKPKGSFSTKSLIIDMAGTNNLIEPSLAKTIWKENYPKKIKFFLWEVVHKAINTNDVLQRRMPYMSLSPERCSLCKRTTNLKATSLPFAPLLRDFG
        +L P G F+ KS  + ++  +        K +W    P K+K F+W V HK +NTND+LQ R P+ +LSP+ C+LC +  + + +  PF PLL D G
Subjt:  ALKPKGSFSTKSLIIDMAGTNNLIEPSLAKTIWKENYPKKIKFFLWEVVHKAINTNDVLQRRMPYMSLSPERCSLCKRTTNLKATSLPFAPLLRDFG

RVW74148.1 putative ribonuclease H protein [Vitis vinifera]1.1e-0943.42Show/hide
Query:  ALKPKGSFSTKSLIIDMAGTNNLIEPSLAKTIWKENYPKKIKFFLWEVVHKAINTNDVLQRRMPYMSLSPERCSLC
        +L   G F+ KS  + ++  + L      K +W    P KIKFF+W V HK +NTND+LQ R PY +LSP+ C LC
Subjt:  ALKPKGSFSTKSLIIDMAGTNNLIEPSLAKTIWKENYPKKIKFFLWEVVHKAINTNDVLQRRMPYMSLSPERCSLC

RVX23043.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]4.0e-0937.5Show/hide
Query:  ALKPKGSFSTKSLIIDMAGTNNLIEPSLAKTIWKENYPKKIKFFLWEVVHKAINTNDVLQRRMPYMSLSPERCSLCKRTTNLKATSLP
        +L P G F+ KS  + ++  +        K +W    P K+K F+W V HK +NTND+LQ R PY +LSP+ C LC +      + LP
Subjt:  ALKPKGSFSTKSLIIDMAGTNNLIEPSLAKTIWKENYPKKIKFFLWEVVHKAINTNDVLQRRMPYMSLSPERCSLCKRTTNLKATSLP

TrEMBL top hitse value%identityAlignment
A0A438D6P3 zf-RVT domain-containing protein2.0e-0941.56Show/hide
Query:  LKPKGSFSTKSLIIDMAGTNNLIEPSLAKTIWKENYPKKIKFFLWEVVHKAINTNDVLQRRMPYMSLSPERCSLCKR
        L   G FS KS  + ++ +    +   +K +W    P K+KFF+W V HK +NTND+LQ R PY +LSP+ C LC +
Subjt:  LKPKGSFSTKSLIIDMAGTNNLIEPSLAKTIWKENYPKKIKFFLWEVVHKAINTNDVLQRRMPYMSLSPERCSLCKR

A0A438DMT0 zf-RVT domain-containing protein1.4e-1038.14Show/hide
Query:  ALKPKGSFSTKSLIIDMAGTNNLIEPSLAKTIWKENYPKKIKFFLWEVVHKAINTNDVLQRRMPYMSLSPERCSLCKRTTNLKATSLPFAPLLRDFG
        +L P G F+ KS  + ++  +        K +W    P K+K F+W V HK +NTND+LQ R P+ +LSP+ C+LC +  + + +  PF PLL D G
Subjt:  ALKPKGSFSTKSLIIDMAGTNNLIEPSLAKTIWKENYPKKIKFFLWEVVHKAINTNDVLQRRMPYMSLSPERCSLCKRTTNLKATSLPFAPLLRDFG

A0A438GPP0 Putative ribonuclease H protein5.1e-1043.42Show/hide
Query:  ALKPKGSFSTKSLIIDMAGTNNLIEPSLAKTIWKENYPKKIKFFLWEVVHKAINTNDVLQRRMPYMSLSPERCSLC
        +L   G F+ KS  + ++  + L      K +W    P KIKFF+W V HK +NTND+LQ R PY +LSP+ C LC
Subjt:  ALKPKGSFSTKSLIIDMAGTNNLIEPSLAKTIWKENYPKKIKFFLWEVVHKAINTNDVLQRRMPYMSLSPERCSLC

A0A438KPB4 LINE-1 retrotransposable element ORF2 protein2.0e-0937.5Show/hide
Query:  ALKPKGSFSTKSLIIDMAGTNNLIEPSLAKTIWKENYPKKIKFFLWEVVHKAINTNDVLQRRMPYMSLSPERCSLCKRTTNLKATSLP
        +L P G F+ KS  + ++  +        K +W    P K+K F+W V HK +NTND+LQ R PY +LSP+ C LC +      + LP
Subjt:  ALKPKGSFSTKSLIIDMAGTNNLIEPSLAKTIWKENYPKKIKFFLWEVVHKAINTNDVLQRRMPYMSLSPERCSLCKRTTNLKATSLP

A5BPI6 Uncharacterized protein5.1e-1043.42Show/hide
Query:  ALKPKGSFSTKSLIIDMAGTNNLIEPSLAKTIWKENYPKKIKFFLWEVVHKAINTNDVLQRRMPYMSLSPERCSLC
        +L   G F+ KS  + ++  + L      K +W    P KIKFF+W V HK +NTND+LQ R PY +LSP+ C LC
Subjt:  ALKPKGSFSTKSLIIDMAGTNNLIEPSLAKTIWKENYPKKIKFFLWEVVHKAINTNDVLQRRMPYMSLSPERCSLC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGGCCCTTAAGCCCAAGGGATCCTTCTCAACAAAATCTCTCATCATTGACATGGCTGGTACCAACAACCTCATTGAGCCATCTTTGGCAAAGACAATCTGGAA
AGAAAATTACCCAAAGAAAATAAAATTTTTCTTATGGGAAGTTGTCCACAAAGCCATCAATACTAATGATGTTTTGCAAAGACGTATGCCTTACATGTCTCTTTCGCCTG
AAAGATGCTCATTATGCAAAAGGACAACGAATCTCAAGGCCACATCTTTGCCCTTTGCCCCTTTGCTCAGAGATTTTGGTCCAGAATCATTAAGTCTTTTGGATGGCCCC
TTGTTATCTCGGGTAATATGGATGTTCTCCTTGCATCGGTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGGCCCTTAAGCCCAAGGGATCCTTCTCAACAAAATCTCTCATCATTGACATGGCTGGTACCAACAACCTCATTGAGCCATCTTTGGCAAAGACAATCTGGAA
AGAAAATTACCCAAAGAAAATAAAATTTTTCTTATGGGAAGTTGTCCACAAAGCCATCAATACTAATGATGTTTTGCAAAGACGTATGCCTTACATGTCTCTTTCGCCTG
AAAGATGCTCATTATGCAAAAGGACAACGAATCTCAAGGCCACATCTTTGCCCTTTGCCCCTTTGCTCAGAGATTTTGGTCCAGAATCATTAAGTCTTTTGGATGGCCCC
TTGTTATCTCGGGTAATATGGATGTTCTCCTTGCATCGGTTCTGA
Protein sequenceShow/hide protein sequence
MEMALKPKGSFSTKSLIIDMAGTNNLIEPSLAKTIWKENYPKKIKFFLWEVVHKAINTNDVLQRRMPYMSLSPERCSLCKRTTNLKATSLPFAPLLRDFGPESLSLLDGP
LLSRVIWMFSLHRF