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Lag0013258 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0013258
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr1:48805976..48806656
RNA-Seq ExpressionLag0013258
SyntenyLag0013258
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037436.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.5e-3332.89Show/hide
Query:  GGLAIGNIKHRNVALLSKWIWRFVSEDEALWCKVIKAKYYPMATNQQWPLVSNEGSSKALWSSISMLNSIVKHNIKRELGNGNHITFWHDVWIQNHTLAS
        GGL I N+K  N ALL KW+WRF  E ++LW ++I AKY         P +    S KA W  I       +++   E+ +G +++FWH  WI + +L++
Subjt:  GGLAIGNIKHRNVALLSKWIWRFVSEDEALWCKVIKAKYYPMATNQQWPLVSNEGSSKALWSSISMLNSIVKHNIKRELGNGNHITFWHDVWIQNHTLAS

Query:  LYPKLYRLSTSTHASVANIWKVDNGVWDMGFRRNLNDFEIAEWVSLSHCLSYVVLKNNNDSWSWNYGTSKTFSVHSMKEVLTLQ---GGYSIEHLYSVIW
         YP+LY LS + +A++  +W  +   W++  RR LND EI  W +L   L  + L    ++  W      T++  S K  L  +      +  + Y  +W
Subjt:  LYPKLYRLSTSTHASVANIWKVDNGVWDMGFRRNLNDFEIAEWVSLSHCLSYVVLKNNNDSWSWNYGTSKTFSVHSMKEVLTLQ---GGYSIEHLYSVIW

Query:  KGSYPRKINIFLWELSHSGANTMDRLQR
        K   P+K   F+W L H   NT D LQ+
Subjt:  KGSYPRKINIFLWELSHSGANTMDRLQR

KAA0040037.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.6e-3433.48Show/hide
Query:  GGLAIGNIKHRNVALLSKWIWRFVSEDEALWCKVIKAKYYPMATNQQWPLVSNEGSSKALWSSISMLNSIVKHNIKRELGNGNHITFWHDVWIQNHTLAS
        GGL I  +K  N ALL+KW+WR++ ED  LW K+I AKY  ++     P V N  SS++ W SI       + ++  ++ NG   +FWH  W QN  L+ 
Subjt:  GGLAIGNIKHRNVALLSKWIWRFVSEDEALWCKVIKAKYYPMATNQQWPLVSNEGSSKALWSSISMLNSIVKHNIKRELGNGNHITFWHDVWIQNHTLAS

Query:  LYPKLYRLSTSTHASVANIWKVDNGVWDMGFRRNLNDFEIAEWVSLSHCLSYVVLKNNNDSWSWNYGTSKTFSVHSMKEVLTLQGGYSI-----EHLYSV
         YP+L+ LST+  +S+ ++W      WD+  RR L ++E   W  L + L+    +N  DS +W   ++  ++V S+K+ L  Q   S+     ++ +  
Subjt:  LYPKLYRLSTSTHASVANIWKVDNGVWDMGFRRNLNDFEIAEWVSLSHCLSYVVLKNNNDSWSWNYGTSKTFSVHSMKEVLTLQGGYSI-----EHLYSV

Query:  IWKGSYPRKINIFLWELSHSGANTMDRLQR
        +WK S P+K   F+W L +   NT ++L +
Subjt:  IWKGSYPRKINIFLWELSHSGANTMDRLQR

TYK00226.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.5e-3332.89Show/hide
Query:  GGLAIGNIKHRNVALLSKWIWRFVSEDEALWCKVIKAKYYPMATNQQWPLVSNEGSSKALWSSISMLNSIVKHNIKRELGNGNHITFWHDVWIQNHTLAS
        GGL I N+K  N ALL KW+WRF  E ++LW ++I AKY         P +    S KA W  I       +++   E+ +G +++FWH  WI + +L++
Subjt:  GGLAIGNIKHRNVALLSKWIWRFVSEDEALWCKVIKAKYYPMATNQQWPLVSNEGSSKALWSSISMLNSIVKHNIKRELGNGNHITFWHDVWIQNHTLAS

Query:  LYPKLYRLSTSTHASVANIWKVDNGVWDMGFRRNLNDFEIAEWVSLSHCLSYVVLKNNNDSWSWNYGTSKTFSVHSMKEVLTLQ---GGYSIEHLYSVIW
         YP+LY LS + +A++  +W  +   W++  RR LND EI  W +L   L  + L    ++  W      T++  S K  L  +      +  + Y  +W
Subjt:  LYPKLYRLSTSTHASVANIWKVDNGVWDMGFRRNLNDFEIAEWVSLSHCLSYVVLKNNNDSWSWNYGTSKTFSVHSMKEVLTLQ---GGYSIEHLYSVIW

Query:  KGSYPRKINIFLWELSHSGANTMDRLQR
        K   P+K   F+W L H   NT D LQ+
Subjt:  KGSYPRKINIFLWELSHSGANTMDRLQR

TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.7e-3433.91Show/hide
Query:  GGLAIGNIKHRNVALLSKWIWRFVSEDEALWCKVIKAKYYPMATNQQWPLVSNEGSSKALWSSISMLNSIVKHNIKRELGNGNHITFWHDVWIQNHTLAS
        GGL I  +K  N ALL+KW+WR++ ED  LW K+I AKY  ++     P V N  SS++ W SI       + ++  ++ NG   +FWH  W QN  L+S
Subjt:  GGLAIGNIKHRNVALLSKWIWRFVSEDEALWCKVIKAKYYPMATNQQWPLVSNEGSSKALWSSISMLNSIVKHNIKRELGNGNHITFWHDVWIQNHTLAS

Query:  LYPKLYRLSTSTHASVANIWKVDNGVWDMGFRRNLNDFEIAEWVSLSHCLSYVVLKNNNDSWSWNYGTSKTFSVHSMKEVLTLQGGYSI-----EHLYSV
         YP+LY LST+  +S+ ++W      WD+  RR L ++E+  W  L + ++    +N  DS  W   ++  ++V S+K+ L  Q   S+     ++ +  
Subjt:  LYPKLYRLSTSTHASVANIWKVDNGVWDMGFRRNLNDFEIAEWVSLSHCLSYVVLKNNNDSWSWNYGTSKTFSVHSMKEVLTLQGGYSI-----EHLYSV

Query:  IWKGSYPRKINIFLWELSHSGANTMDRLQR
        +WK S P+K   F+W L +   NT ++L +
Subjt:  IWKGSYPRKINIFLWELSHSGANTMDRLQR

XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]2.1e-3534.06Show/hide
Query:  GGLAIGNIKHRNVALLSKWIWRFVSEDEALWCKVIKAKYYPMATNQQWPLVSNEGSSKALWSSISMLNSIVKHNIKRELGNGNHITFWHDVWIQNHTLAS
        GGL I  +K  N ALL+KW+WR++ ED  LW K+I AKY  ++     P V N  SS++ W SI       + ++  ++ NG   +FWH  W QN  L+S
Subjt:  GGLAIGNIKHRNVALLSKWIWRFVSEDEALWCKVIKAKYYPMATNQQWPLVSNEGSSKALWSSISMLNSIVKHNIKRELGNGNHITFWHDVWIQNHTLAS

Query:  LYPKLYRLSTSTHASVANIWKVDNGVWDMGFRRNLNDFEIAEWVSLSHCLSYVVLKNNNDSWSWNYGTSKTFSVHSMKEVLTLQG----GYSIEHLYSVI
         YP+LY LST+  +S+ ++W      WD+  RR L ++E   W  L + L+    +N NDS  W   ++  ++V S+K+ L         +  ++ +  +
Subjt:  LYPKLYRLSTSTHASVANIWKVDNGVWDMGFRRNLNDFEIAEWVSLSHCLSYVVLKNNNDSWSWNYGTSKTFSVHSMKEVLTLQG----GYSIEHLYSVI

Query:  WKGSYPRKINIFLWELSHSGANTMDRLQR
        WK S P+K   F+W L +   NT ++L +
Subjt:  WKGSYPRKINIFLWELSHSGANTMDRLQR

TrEMBL top hitse value%identityAlignment
A0A540M4H0 zf-RVT domain-containing protein4.6e-3334.65Show/hide
Query:  GGLAIGNIKHRNVALLSKWIWRFVSEDEALWCKVIKAKYYPMATNQQWPLVSNEGSSKALWSSISMLNSIVKHNIKRELGNGNHITFWHDVWIQNHTLAS
        GGL +GN+++RN ALL+KW+WRF  E  +LW KVI++K Y +  N         GSS++ W  IS  + +  H  K E+GNG  + FW D W++   L  
Subjt:  GGLAIGNIKHRNVALLSKWIWRFVSEDEALWCKVIKAKYYPMATNQQWPLVSNEGSSKALWSSISMLNSIVKHNIKRELGNGNHITFWHDVWIQNHTLAS

Query:  LYPKLYRLSTSTHASVANI--WKVDNGVWDMGFRRNLNDFEIAEWVSLSHCLSYVVL-KNNNDSWSWNYGTSKTFSVHSMKEVLTLQGGYSIEHLYSVIW
         +P+L+ LS   + ++++   +  ++  W+  FRRNLN+ EI E   L   +  V L ++  D+  W    S+ F+  S +  L+  G       YS IW
Subjt:  LYPKLYRLSTSTHASVANI--WKVDNGVWDMGFRRNLNDFEIAEWVSLSHCLSYVVL-KNNNDSWSWNYGTSKTFSVHSMKEVLTLQGGYSIEHLYSVIW

Query:  KGSYPRKINIFLWELSHSGANTMDRLQR
        K   P K+ I +W ++    NT D++QR
Subjt:  KGSYPRKINIFLWELSHSGANTMDRLQR

A0A5A7T5L3 LINE-1 retrotransposable element ORF2 protein1.2e-3332.89Show/hide
Query:  GGLAIGNIKHRNVALLSKWIWRFVSEDEALWCKVIKAKYYPMATNQQWPLVSNEGSSKALWSSISMLNSIVKHNIKRELGNGNHITFWHDVWIQNHTLAS
        GGL I N+K  N ALL KW+WRF  E ++LW ++I AKY         P +    S KA W  I       +++   E+ +G +++FWH  WI + +L++
Subjt:  GGLAIGNIKHRNVALLSKWIWRFVSEDEALWCKVIKAKYYPMATNQQWPLVSNEGSSKALWSSISMLNSIVKHNIKRELGNGNHITFWHDVWIQNHTLAS

Query:  LYPKLYRLSTSTHASVANIWKVDNGVWDMGFRRNLNDFEIAEWVSLSHCLSYVVLKNNNDSWSWNYGTSKTFSVHSMKEVLTLQ---GGYSIEHLYSVIW
         YP+LY LS + +A++  +W  +   W++  RR LND EI  W +L   L  + L    ++  W      T++  S K  L  +      +  + Y  +W
Subjt:  LYPKLYRLSTSTHASVANIWKVDNGVWDMGFRRNLNDFEIAEWVSLSHCLSYVVLKNNNDSWSWNYGTSKTFSVHSMKEVLTLQ---GGYSIEHLYSVIW

Query:  KGSYPRKINIFLWELSHSGANTMDRLQR
        K   P+K   F+W L H   NT D LQ+
Subjt:  KGSYPRKINIFLWELSHSGANTMDRLQR

A0A5A7UV84 Reverse transcriptase domain-containing protein1.6e-3034.5Show/hide
Query:  GGLAIGNIKHRNVALLSKWIWRFVSEDEALWCKVIKAKYYPMATNQQWPLVSNEGSSKALWSSISMLNSIVKHNIKRELGNGNHITFWHDVWIQNHTLAS
        GGL I  ++  N ALLSKW+WR+ SE  ALW ++I+ KY         P  ++  SSKA W SI       K N   +L NG+ I+FW+  W Q   L++
Subjt:  GGLAIGNIKHRNVALLSKWIWRFVSEDEALWCKVIKAKYYPMATNQQWPLVSNEGSSKALWSSISMLNSIVKHNIKRELGNGNHITFWHDVWIQNHTLAS

Query:  LYPKLYRLSTSTHASVANIWKVDNGVWDMGFRRNLNDFEIAEWVSLSHCLSYVVLKNNNDSWSWNYGTSKTFSVHSMKEVLTLQ----GGYSIEHLYSVI
         YP+L+ L+     SV + W   +  W + FRR LND E   W  +   L        +   +W    +K+FS+ S K +++ Q     G S   L  +I
Subjt:  LYPKLYRLSTSTHASVANIWKVDNGVWDMGFRRNLNDFEIAEWVSLSHCLSYVVLKNNNDSWSWNYGTSKTFSVHSMKEVLTLQ----GGYSIEHLYSVI

Query:  WKGSYPRKINIFLWELSHSGANTMDRLQR
        WK + P KI  F+W L     +TM+ +Q+
Subjt:  WKGSYPRKINIFLWELSHSGANTMDRLQR

A0A5D3BL61 LINE-1 retrotransposable element ORF2 protein1.3e-3034.22Show/hide
Query:  GGLAIGNIKHRNVALLSKWIWRFVSEDEALWCKVIKAKYYPMATNQQWPLVSNEGSSKALWSSISMLNSIVKHNIKRELGNGNHITFWHDVWIQNHTLAS
        GGL I  ++  N ALLSKW+WR+ SE  +LW ++I  KY         P   +  SSKA W SI       K N   +L NG+ I+FW+  W     L++
Subjt:  GGLAIGNIKHRNVALLSKWIWRFVSEDEALWCKVIKAKYYPMATNQQWPLVSNEGSSKALWSSISMLNSIVKHNIKRELGNGNHITFWHDVWIQNHTLAS

Query:  LYPKLYRLSTSTHASVANIWKVDNGVWDMGFRRNLNDFEIAEWVSLSHCLSYVVLKNNNDSWSWNYGTSKTFSVHSMKEVLTLQGGYSIEH----LYSVI
         YP+L+ LS    +S+ ++W  +N  W++ FRR LND E++ W  +   L  +         +W   + K FS+ S K  ++ Q   S+ +    L ++I
Subjt:  LYPKLYRLSTSTHASVANIWKVDNGVWDMGFRRNLNDFEIAEWVSLSHCLSYVVLKNNNDSWSWNYGTSKTFSVHSMKEVLTLQGGYSIEH----LYSVI

Query:  WKGSYPRKINIFLWELSHSGANTMD
        WK   P KI  F+W L     NTM+
Subjt:  WKGSYPRKINIFLWELSHSGANTMD

A0A5D3BPP1 LINE-1 retrotransposable element ORF2 protein1.2e-3332.89Show/hide
Query:  GGLAIGNIKHRNVALLSKWIWRFVSEDEALWCKVIKAKYYPMATNQQWPLVSNEGSSKALWSSISMLNSIVKHNIKRELGNGNHITFWHDVWIQNHTLAS
        GGL I N+K  N ALL KW+WRF  E ++LW ++I AKY         P +    S KA W  I       +++   E+ +G +++FWH  WI + +L++
Subjt:  GGLAIGNIKHRNVALLSKWIWRFVSEDEALWCKVIKAKYYPMATNQQWPLVSNEGSSKALWSSISMLNSIVKHNIKRELGNGNHITFWHDVWIQNHTLAS

Query:  LYPKLYRLSTSTHASVANIWKVDNGVWDMGFRRNLNDFEIAEWVSLSHCLSYVVLKNNNDSWSWNYGTSKTFSVHSMKEVLTLQ---GGYSIEHLYSVIW
         YP+LY LS + +A++  +W  +   W++  RR LND EI  W +L   L  + L    ++  W      T++  S K  L  +      +  + Y  +W
Subjt:  LYPKLYRLSTSTHASVANIWKVDNGVWDMGFRRNLNDFEIAEWVSLSHCLSYVVLKNNNDSWSWNYGTSKTFSVHSMKEVLTLQ---GGYSIEHLYSVIW

Query:  KGSYPRKINIFLWELSHSGANTMDRLQR
        K   P+K   F+W L H   NT D LQ+
Subjt:  KGSYPRKINIFLWELSHSGANTMDRLQR

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657505.5e-1525.86Show/hide
Query:  GGLAIGNIKHRNVALLSKWIWRFVSEDEALWCKVIKAKYYPMATNQQWPLVSNEGSSKALWSSISM-LNSIVKHNIKRELGNGNHITFWHDVWIQNHTLA
        GGL +   K  N AL+SK  WR + E  +LW  V++ KY+         L+  +GS  + W SI++ L  +V H +    G+G  I FW D W+    L 
Subjt:  GGLAIGNIKHRNVALLSKWIWRFVSEDEALWCKVIKAKYYPMATNQQWPLVSNEGSSKALWSSISM-LNSIVKHNIKRELGNGNHITFWHDVWIQNHTLA

Query:  SLYPKLYRLSTSTHASVANIWKVDNGVWDMG----FRRNLNDFEIAEWVSLSHCLSYVVLKNNNDSWSWNYGTSKTFSVHSMKEVLTLQ--GGYSIEHLY
         L     R +        ++W    G WD      +  N    E+         +   ++    D  SW +     FSV S  E+LT+      ++   +
Subjt:  SLYPKLYRLSTSTHASVANIWKVDNGVWDMG----FRRNLNDFEIAEWVSLSHCLSYVVLKNNNDSWSWNYGTSKTFSVHSMKEVLTLQ--GGYSIEHLY

Query:  SVIWKGSYPRKINIFLWELSHSGANTMDRLQR
        + +WK   P ++  FLW + +    T +   R
Subjt:  SVIWKGSYPRKINIFLWELSHSGANTMDRLQR

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGGTCTGGCCATTGGTAACATCAAGCATAGGAATGTGGCTCTCTTATCAAAATGGATATGGAGATTTGTTTCTGAAGATGAAGCCCTCTGGTGTAAAGTCATCAA
AGCTAAGTATTACCCTATGGCTACCAACCAACAATGGCCCTTGGTTTCAAATGAAGGATCCTCTAAAGCACTGTGGTCATCGATTTCTATGTTAAACAGCATTGTAAAGC
ATAATATTAAAAGAGAATTGGGCAATGGAAATCACATCACTTTTTGGCATGATGTCTGGATCCAAAATCACACTTTGGCTTCTTTATATCCAAAACTGTACAGACTTTCC
ACAAGTACTCATGCTTCGGTGGCCAACATATGGAAAGTTGATAATGGAGTTTGGGACATGGGTTTCAGGAGAAACCTAAATGATTTTGAAATAGCTGAATGGGTCTCCTT
GTCTCATTGCCTTTCATATGTTGTTTTAAAAAATAACAATGACTCATGGAGTTGGAATTATGGAACATCCAAAACCTTTTCAGTCCATTCTATGAAGGAGGTTTTAACAC
TACAGGGAGGTTATTCTATAGAACATTTATATTCAGTTATATGGAAAGGATCTTATCCTCGAAAAATTAATATTTTCCTATGGGAGCTTAGCCATAGTGGTGCTAACACC
ATGGATCGCCTTCAACGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGGTCTGGCCATTGGTAACATCAAGCATAGGAATGTGGCTCTCTTATCAAAATGGATATGGAGATTTGTTTCTGAAGATGAAGCCCTCTGGTGTAAAGTCATCAA
AGCTAAGTATTACCCTATGGCTACCAACCAACAATGGCCCTTGGTTTCAAATGAAGGATCCTCTAAAGCACTGTGGTCATCGATTTCTATGTTAAACAGCATTGTAAAGC
ATAATATTAAAAGAGAATTGGGCAATGGAAATCACATCACTTTTTGGCATGATGTCTGGATCCAAAATCACACTTTGGCTTCTTTATATCCAAAACTGTACAGACTTTCC
ACAAGTACTCATGCTTCGGTGGCCAACATATGGAAAGTTGATAATGGAGTTTGGGACATGGGTTTCAGGAGAAACCTAAATGATTTTGAAATAGCTGAATGGGTCTCCTT
GTCTCATTGCCTTTCATATGTTGTTTTAAAAAATAACAATGACTCATGGAGTTGGAATTATGGAACATCCAAAACCTTTTCAGTCCATTCTATGAAGGAGGTTTTAACAC
TACAGGGAGGTTATTCTATAGAACATTTATATTCAGTTATATGGAAAGGATCTTATCCTCGAAAAATTAATATTTTCCTATGGGAGCTTAGCCATAGTGGTGCTAACACC
ATGGATCGCCTTCAACGATGA
Protein sequenceShow/hide protein sequence
MGGLAIGNIKHRNVALLSKWIWRFVSEDEALWCKVIKAKYYPMATNQQWPLVSNEGSSKALWSSISMLNSIVKHNIKRELGNGNHITFWHDVWIQNHTLASLYPKLYRLS
TSTHASVANIWKVDNGVWDMGFRRNLNDFEIAEWVSLSHCLSYVVLKNNNDSWSWNYGTSKTFSVHSMKEVLTLQGGYSIEHLYSVIWKGSYPRKINIFLWELSHSGANT
MDRLQR