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Lag0013262 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0013262
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr1:48828747..48829292
RNA-Seq ExpressionLag0013262
SyntenyLag0013262
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFY85402.1 hypothetical protein Acr_04g0001400 [Actinidia rufa]3.8e-0847.25Show/hide
Query:  ATTSYPSAYPSFFPPHNFPNNQPSSVHPLP--FTPNPYPTLP---QPLAVKLNDTNFLLWKNQLLKAVLANGLHGFLDGSVPAPSRFLDDQ
        +TT   S  P+  PP + P    S  +P P     +P P +P   QPLAVKL+D N+++WK QLL  V+ANGL  FLDGS   P RFLD Q
Subjt:  ATTSYPSAYPSFFPPHNFPNNQPSSVHPLP--FTPNPYPTLP---QPLAVKLNDTNFLLWKNQLLKAVLANGLHGFLDGSVPAPSRFLDDQ

PON47862.1 hypothetical protein TorRG33x02_321990 [Trema orientale]2.2e-0850Show/hide
Query:  PPHNFPNNQPSSVHPLPFTPNPYPTLP---QPLAVKLNDTNFLLWKNQLLKAVLANGLHGFLDGSVPAPSRFLD
        PP N PN Q   +   P  P P P LP   QP  +KL+  N+L+WKNQLL  ++ANGL  F+DGS P P RF D
Subjt:  PPHNFPNNQPSSVHPLPFTPNPYPTLP---QPLAVKLNDTNFLLWKNQLLKAVLANGLHGFLDGSVPAPSRFLD

RVW56403.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]1.8e-1051.47Show/hide
Query:  PSSVHPLP-FTPN----PYPTLPQPLAVKLNDTNFLLWKNQLLKAVLANGLHGFLDGSVPAPSRFLDD
        P +++P P F+PN     YP+L QPL +KL++TN  LWKNQLL  ++ANGL  F++G  P P++FLDD
Subjt:  PSSVHPLP-FTPN----PYPTLPQPLAVKLNDTNFLLWKNQLLKAVLANGLHGFLDGSVPAPSRFLDD

RVX22862.1 hypothetical protein CK203_008411 [Vitis vinifera]3.1e-1050Show/hide
Query:  PSSVHPLP-FTPN----PYPTLPQPLAVKLNDTNFLLWKNQLLKAVLANGLHGFLDGSVPAPSRFLDD
        P +++P P F+PN     YP+L QPL +KL++TN  LWKNQL+  ++ANGL  F++G  P P++FLDD
Subjt:  PSSVHPLP-FTPN----PYPTLPQPLAVKLNDTNFLLWKNQLLKAVLANGLHGFLDGSVPAPSRFLDD

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]2.7e-1462.5Show/hide
Query:  FPPHNFPNNQPSSVHPLPFTPNPYPTLPQPLAVKLNDTNFLLWKNQLLKAVLANGLHGFLDGSVPAPSRFLD
        FPP   P     +  P PF+ NP+PTLPQPL VKLND NFLLWKNQLL AV+ANGL G+LDG++  P +FLD
Subjt:  FPPHNFPNNQPSSVHPLPFTPNPYPTLPQPLAVKLNDTNFLLWKNQLLKAVLANGLHGFLDGSVPAPSRFLD

TrEMBL top hitse value%identityAlignment
A0A2P5BGF8 Uncharacterized protein1.1e-0850Show/hide
Query:  PPHNFPNNQPSSVHPLPFTPNPYPTLP---QPLAVKLNDTNFLLWKNQLLKAVLANGLHGFLDGSVPAPSRFLD
        PP N PN Q   +   P  P P P LP   QP  +KL+  N+L+WKNQLL  ++ANGL  F+DGS P P RF D
Subjt:  PPHNFPNNQPSSVHPLPFTPNPYPTLP---QPLAVKLNDTNFLLWKNQLLKAVLANGLHGFLDGSVPAPSRFLD

A0A438F8X3 Retrovirus-related Pol polyprotein from transposon RE18.9e-1151.47Show/hide
Query:  PSSVHPLP-FTPN----PYPTLPQPLAVKLNDTNFLLWKNQLLKAVLANGLHGFLDGSVPAPSRFLDD
        P +++P P F+PN     YP+L QPL +KL++TN  LWKNQLL  ++ANGL  F++G  P P++FLDD
Subjt:  PSSVHPLP-FTPN----PYPTLPQPLAVKLNDTNFLLWKNQLLKAVLANGLHGFLDGSVPAPSRFLDD

A0A438KNU0 Uncharacterized protein1.5e-1050Show/hide
Query:  PSSVHPLP-FTPN----PYPTLPQPLAVKLNDTNFLLWKNQLLKAVLANGLHGFLDGSVPAPSRFLDD
        P +++P P F+PN     YP+L QPL +KL++TN  LWKNQL+  ++ANGL  F++G  P P++FLDD
Subjt:  PSSVHPLP-FTPN----PYPTLPQPLAVKLNDTNFLLWKNQLLKAVLANGLHGFLDGSVPAPSRFLDD

A0A6J1DQX7 uncharacterized protein LOC1110223151.3e-1462.5Show/hide
Query:  FPPHNFPNNQPSSVHPLPFTPNPYPTLPQPLAVKLNDTNFLLWKNQLLKAVLANGLHGFLDGSVPAPSRFLD
        FPP   P     +  P PF+ NP+PTLPQPL VKLND NFLLWKNQLL AV+ANGL G+LDG++  P +FLD
Subjt:  FPPHNFPNNQPSSVHPLPFTPNPYPTLPQPLAVKLNDTNFLLWKNQLLKAVLANGLHGFLDGSVPAPSRFLD

A0A7J0EGI5 Uncharacterized protein1.8e-0847.25Show/hide
Query:  ATTSYPSAYPSFFPPHNFPNNQPSSVHPLP--FTPNPYPTLP---QPLAVKLNDTNFLLWKNQLLKAVLANGLHGFLDGSVPAPSRFLDDQ
        +TT   S  P+  PP + P    S  +P P     +P P +P   QPLAVKL+D N+++WK QLL  V+ANGL  FLDGS   P RFLD Q
Subjt:  ATTSYPSAYPSFFPPHNFPNNQPSSVHPLP--FTPNPYPTLP---QPLAVKLNDTNFLLWKNQLLKAVLANGLHGFLDGSVPAPSRFLDDQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCAGATTCTTCATCATCCTCTACTTCTTCTGAAGCTCTTCCCACCCCTACTGAAAATCCATCTACACCAGTCACTACCCCCATTGTTACCCCGATTGCTCAACA
AGGCAAGTCCCCAATCTCCTCACAACCTGCCTTACCATCATCTGGTCCCCGACCCGCTGTTCGACCGAATCAATCTTCGAATCCTTCCTTCAATCCTTACCCACAACAAA
CCCAACCCTATTACCCACCAAATCCAAGCTTCTTTCAACCCTATTATCCTTCCAATTTTCCAAGAGCAACTACTTCCTATCCCTCTGCCTACCCATCATTTTTTCCTCCC
CATAATTTCCCTAATAACCAACCTTCGTCTGTTCATCCTCTTCCCTTTACTCCAAACCCCTACCCTACTTTACCCCAGCCTCTGGCCGTCAAGCTGAATGACACAAATTT
TCTCCTCTGGAAGAATCAACTTCTCAAAGCTGTTTTAGCAAATGGTCTCCATGGCTTCCTCGATGGTTCTGTCCCTGCTCCTTCTCGGTTTCTTGATGATCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCAGATTCTTCATCATCCTCTACTTCTTCTGAAGCTCTTCCCACCCCTACTGAAAATCCATCTACACCAGTCACTACCCCCATTGTTACCCCGATTGCTCAACA
AGGCAAGTCCCCAATCTCCTCACAACCTGCCTTACCATCATCTGGTCCCCGACCCGCTGTTCGACCGAATCAATCTTCGAATCCTTCCTTCAATCCTTACCCACAACAAA
CCCAACCCTATTACCCACCAAATCCAAGCTTCTTTCAACCCTATTATCCTTCCAATTTTCCAAGAGCAACTACTTCCTATCCCTCTGCCTACCCATCATTTTTTCCTCCC
CATAATTTCCCTAATAACCAACCTTCGTCTGTTCATCCTCTTCCCTTTACTCCAAACCCCTACCCTACTTTACCCCAGCCTCTGGCCGTCAAGCTGAATGACACAAATTT
TCTCCTCTGGAAGAATCAACTTCTCAAAGCTGTTTTAGCAAATGGTCTCCATGGCTTCCTCGATGGTTCTGTCCCTGCTCCTTCTCGGTTTCTTGATGATCAGTAG
Protein sequenceShow/hide protein sequence
MASDSSSSSTSSEALPTPTENPSTPVTTPIVTPIAQQGKSPISSQPALPSSGPRPAVRPNQSSNPSFNPYPQQTQPYYPPNPSFFQPYYPSNFPRATTSYPSAYPSFFPP
HNFPNNQPSSVHPLPFTPNPYPTLPQPLAVKLNDTNFLLWKNQLLKAVLANGLHGFLDGSVPAPSRFLDDQ