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Lag0013468 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0013468
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionProtein FAR1-RELATED SEQUENCE 4
Genome locationchr1:50498958..50500382
RNA-Seq ExpressionLag0013468
SyntenyLag0013468
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0032196 - transposition (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033326.1 MuDRA-like transposase [Cucumis melo var. makuwa]3.7e-2429.58Show/hide
Query:  LLNVVVLFSGRWDENNRYNGFKSDSVPVPEECTIQEFNECIRSKVFPSDEHMITRLTMYKNGINKANIIRITDDRDVTWVM-------------------
        L  V  +  GRW E++RY  ++  +V VP   + Q+   CI+ ++FP+ E  ++ LT+Y NG N +N+IRI DD+ V+W+M                   
Subjt:  LLNVVVLFSGRWDENNRYNGFKSDSVPVPEECTIQEFNECIRSKVFPSDEHMITRLTMYKNGINKANIIRITDDRDVTWVM-------------------

Query:  -SNIGDG--MASDICVVAD-----------------------------HC-MEGRKLAL--------YCHQWV----TRSVVCTNPCFLCCP-DRENPVM
         SNIG+   ++S++ +  D                             HC + G K+ L            W+    T+S    N    C P D  N + 
Subjt:  -SNIGDG--MASDICVVAD-----------------------------HC-MEGRKLAL--------YCHQWV----TRSVVCTNPCFLCCP-DRENPVM

Query:  TRYGGG---------RNLHFTAIRGSPEASYALILVFSVALIEKNPGAYTAFDVDDEGKFRYFFMCVSTSIHAWKYCFPVMSVE
          +G           R +   +I G+PE SY ++  FS A I  NPG Y A   DDEG+F+++FM ++ SI AW YC PV+ V+
Subjt:  TRYGGG---------RNLHFTAIRGSPEASYALILVFSVALIEKNPGAYTAFDVDDEGKFRYFFMCVSTSIHAWKYCFPVMSVE

KAA0038035.1 uncharacterized protein E6C27_scaffold36G002340 [Cucumis melo var. makuwa]6.4e-2427.34Show/hide
Query:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEECTIQEFNECIRSKVFPSDEHMITRLTMYKNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVAD-
        + L  V  +F GRW E++RY  +    V VP   + QEF  CI+ ++FP+ E  ++RLT+Y    N +N+I+I +D+D +W+M  I     +D+ +V D 
Subjt:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEECTIQEFNECIRSKVFPSDEHMITRLTMYKNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVAD-

Query:  -------------------------------HCMEGRK--LALYCHQWVTRSVVCTNPCFLCCPDRENPVMTRYGGGRNLH----------FTAIRGSPE
                                       +  E     +++       + +V     ++   +    ++T      +            +    G+PE
Subjt:  -------------------------------HCMEGRK--LALYCHQWVTRSVVCTNPCFLCCPDRENPVMTRYGGGRNLH----------FTAIRGSPE

Query:  ASYALILVFSVALIEKNPGAYTAFDVDDEGKFRYFFMCVSTSIHAWKYCFPVMSVE
          YA++  FS ALI  NPG YTA + DDEG+F+++FM ++ SI AW YC P++ V+
Subjt:  ASYALILVFSVALIEKNPGAYTAFDVDDEGKFRYFFMCVSTSIHAWKYCFPVMSVE

KAA0066503.1 uncharacterized protein E6C27_scaffold25G00500 [Cucumis melo var. makuwa]3.4e-2533.96Show/hide
Query:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEECTIQEFNECIRSKVFPSDEHMITRLTMYKNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVADH
        + L  V  +F GRW E+ RY  ++   V VP   + QEF  CI  ++FP+ E  ++RLT+Y    N   +IRI DD+DV+W+M  I     +D+ +V D 
Subjt:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEECTIQEFNECIRSKVFPSDEHMITRLTMYKNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVADH

Query:  CMEGRKLALYCHQWVTRSVVCTNPCFLCCPDRENPVMTRYGGGRNLHFTAIRGSPEASYALILVFSVALIEKNPGAYTAFDVDDEGKFRYFFMCVSTSIH
                             T P             T  G           G+ E SYA++  F  ALI  NPG YTA + +DEG+F+++ M ++ SI 
Subjt:  CMEGRKLALYCHQWVTRSVVCTNPCFLCCPDRENPVMTRYGGGRNLHFTAIRGSPEASYALILVFSVALIEKNPGAYTAFDVDDEGKFRYFFMCVSTSIH

Query:  AWKYCFPVMSVE
        AW YC PV+SV+
Subjt:  AWKYCFPVMSVE

TYK21259.1 protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa]2.6e-2530.47Show/hide
Query:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEECTIQEFNECIRSKVFPSDEHMITRLTMYKNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVAD-
        + L  V  +F GRW E+ RY  ++                  I+ ++FP+ E  ++RLT+Y    N +  IRI DD++V+W+M  +     +D+ +V D 
Subjt:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEECTIQEFNECIRSKVFPSDEHMITRLTMYKNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVAD-

Query:  -----------------HCMEGRKLALY-------------CHQWV----TRSVVCTNPCFLCCP-DRENPVMTRYGG---------GRNLHFTAIRGSP
                            + R   ++                W+    T+ +  TN    CCP D  N +   +GG         G  +   +IRG+P
Subjt:  -----------------HCMEGRKLALY-------------CHQWV----TRSVVCTNPCFLCCP-DRENPVMTRYGG---------GRNLHFTAIRGSP

Query:  EASYALILVFSVALIEKNPGAYTAFDVDDEGKFRYFFMCVSTSIHAWKYCFPVMSV
        E SYA++  FS ALI  NPG YTA + DDEG+F+++FM ++ SI AW YC PV+SV
Subjt:  EASYALILVFSVALIEKNPGAYTAFDVDDEGKFRYFFMCVSTSIHAWKYCFPVMSV

XP_038887125.1 uncharacterized protein LOC120077310 [Benincasa hispida]4.0e-2628.9Show/hide
Query:  LLNVVVLFSGRWDENNRYNGFKSDSVPVPEECTIQEFNECIRSKVFPSDEHMITRLTMYKNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVADH--
        L  V +LF+GRWDEN++Y+ F+     +P   + Q+F E I+ K+FPS E  I+RL MY  G + +N+I I +D+ + W+M  + D    D+CVV DH  
Subjt:  LLNVVVLFSGRWDENNRYNGFKSDSVPVPEECTIQEFNECIRSKVFPSDEHMITRLTMYKNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVADH--

Query:  -CMEGRKLALYCHQ--------------------------------------WVTRSVVCTNPCFLCCPDRENPVMTR----------------------
           +  +  LY +                                       + ++SV+     FL   +      TR                      
Subjt:  -CMEGRKLALYCHQ--------------------------------------WVTRSVVCTNPCFLCCPDRENPVMTR----------------------

Query:  -YGGG-------------------RNLHFTA--------IRGSPEASYALILVFSVALIEKNPGAYTAFDVDDEGKFRYFFMCVSTSIHAWKYCFPVMSV
         Y GG                   ++ H  A         +G+ E+SY  +  FS ALIE NPG YT  + DDEG+F+Y+F+ ++ SI AWK+CFP+MSV
Subjt:  -YGGG-------------------RNLHFTA--------IRGSPEASYALILVFSVALIEKNPGAYTAFDVDDEGKFRYFFMCVSTSIHAWKYCFPVMSV

Query:  E
        +
Subjt:  E

TrEMBL top hitse value%identityAlignment
A0A5A7TFW2 Protein FAR-RED ELONGATED HYPOCOTYL 3-like1.7e-2231.84Show/hide
Query:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEECTIQEFNECIRSKVFPSDEHMITRLTMYKNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVADH
        + L  V  +  GRW E+ RY  +    V V    + QEF  CI+ ++FP+ +  ++RLT+Y  G N   +I+I DD+DV+W+M  +     +D+ +V D 
Subjt:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEECTIQEFNECIRSKVFPSDEHMITRLTMYKNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVADH

Query:  C-MEGRKLALYCHQWVTRSVVCTNPCFLCCP-DRENPVMTRYG---------GGRNLHFTAIRGSPEASYALILVFSVALIEKNPGAYTAFDVDDEGKFR
              +   Y    + R+    +    C P D  N +   +G          GR     +IR + E SYA++  FS ALI  N       + DD+G+F+
Subjt:  C-MEGRKLALYCHQWVTRSVVCTNPCFLCCP-DRENPVMTRYG---------GGRNLHFTAIRGSPEASYALILVFSVALIEKNPGAYTAFDVDDEGKFR

Query:  YFFMCVSTSIHAWKYCFPVMSVE
        ++FM ++ SI AW YC PV+SV+
Subjt:  YFFMCVSTSIHAWKYCFPVMSVE

A0A5A7VEN5 Uncharacterized protein1.6e-2533.96Show/hide
Query:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEECTIQEFNECIRSKVFPSDEHMITRLTMYKNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVADH
        + L  V  +F GRW E+ RY  ++   V VP   + QEF  CI  ++FP+ E  ++RLT+Y    N   +IRI DD+DV+W+M  I     +D+ +V D 
Subjt:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEECTIQEFNECIRSKVFPSDEHMITRLTMYKNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVADH

Query:  CMEGRKLALYCHQWVTRSVVCTNPCFLCCPDRENPVMTRYGGGRNLHFTAIRGSPEASYALILVFSVALIEKNPGAYTAFDVDDEGKFRYFFMCVSTSIH
                             T P             T  G           G+ E SYA++  F  ALI  NPG YTA + +DEG+F+++ M ++ SI 
Subjt:  CMEGRKLALYCHQWVTRSVVCTNPCFLCCPDRENPVMTRYGGGRNLHFTAIRGSPEASYALILVFSVALIEKNPGAYTAFDVDDEGKFRYFFMCVSTSIH

Query:  AWKYCFPVMSVE
        AW YC PV+SV+
Subjt:  AWKYCFPVMSVE

A0A5D3DAG3 ZnF_PMZ domain-containing protein3.1e-2427.34Show/hide
Query:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEECTIQEFNECIRSKVFPSDEHMITRLTMYKNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVAD-
        + L  V  +F GRW E++RY  +    V VP   + QEF  CI+ ++FP+ E  ++RLT+Y    N +N+I+I +D+D +W+M  I     +D+ +V D 
Subjt:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEECTIQEFNECIRSKVFPSDEHMITRLTMYKNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVAD-

Query:  -------------------------------HCMEGRK--LALYCHQWVTRSVVCTNPCFLCCPDRENPVMTRYGGGRNLH----------FTAIRGSPE
                                       +  E     +++       + +V     ++   +    ++T      +            +    G+PE
Subjt:  -------------------------------HCMEGRK--LALYCHQWVTRSVVCTNPCFLCCPDRENPVMTRYGGGRNLH----------FTAIRGSPE

Query:  ASYALILVFSVALIEKNPGAYTAFDVDDEGKFRYFFMCVSTSIHAWKYCFPVMSVE
          YA++  FS ALI  NPG YTA + DDEG+F+++FM ++ SI AW YC P++ V+
Subjt:  ASYALILVFSVALIEKNPGAYTAFDVDDEGKFRYFFMCVSTSIHAWKYCFPVMSVE

A0A5D3DDB9 Protein FAR1-RELATED SEQUENCE 41.3e-2530.47Show/hide
Query:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEECTIQEFNECIRSKVFPSDEHMITRLTMYKNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVAD-
        + L  V  +F GRW E+ RY  ++                  I+ ++FP+ E  ++RLT+Y    N +  IRI DD++V+W+M  +     +D+ +V D 
Subjt:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEECTIQEFNECIRSKVFPSDEHMITRLTMYKNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVAD-

Query:  -----------------HCMEGRKLALY-------------CHQWV----TRSVVCTNPCFLCCP-DRENPVMTRYGG---------GRNLHFTAIRGSP
                            + R   ++                W+    T+ +  TN    CCP D  N +   +GG         G  +   +IRG+P
Subjt:  -----------------HCMEGRKLALY-------------CHQWV----TRSVVCTNPCFLCCP-DRENPVMTRYGG---------GRNLHFTAIRGSP

Query:  EASYALILVFSVALIEKNPGAYTAFDVDDEGKFRYFFMCVSTSIHAWKYCFPVMSV
        E SYA++  FS ALI  NPG YTA + DDEG+F+++FM ++ SI AW YC PV+SV
Subjt:  EASYALILVFSVALIEKNPGAYTAFDVDDEGKFRYFFMCVSTSIHAWKYCFPVMSV

A0A5D3DDR3 MuDRA-like transposase1.8e-2429.58Show/hide
Query:  LLNVVVLFSGRWDENNRYNGFKSDSVPVPEECTIQEFNECIRSKVFPSDEHMITRLTMYKNGINKANIIRITDDRDVTWVM-------------------
        L  V  +  GRW E++RY  ++  +V VP   + Q+   CI+ ++FP+ E  ++ LT+Y NG N +N+IRI DD+ V+W+M                   
Subjt:  LLNVVVLFSGRWDENNRYNGFKSDSVPVPEECTIQEFNECIRSKVFPSDEHMITRLTMYKNGINKANIIRITDDRDVTWVM-------------------

Query:  -SNIGDG--MASDICVVAD-----------------------------HC-MEGRKLAL--------YCHQWV----TRSVVCTNPCFLCCP-DRENPVM
         SNIG+   ++S++ +  D                             HC + G K+ L            W+    T+S    N    C P D  N + 
Subjt:  -SNIGDG--MASDICVVAD-----------------------------HC-MEGRKLAL--------YCHQWV----TRSVVCTNPCFLCCP-DRENPVM

Query:  TRYGGG---------RNLHFTAIRGSPEASYALILVFSVALIEKNPGAYTAFDVDDEGKFRYFFMCVSTSIHAWKYCFPVMSVE
          +G           R +   +I G+PE SY ++  FS A I  NPG Y A   DDEG+F+++FM ++ SI AW YC PV+ V+
Subjt:  TRYGGG---------RNLHFTAIRGSPEASYALILVFSVALIEKNPGAYTAFDVDDEGKFRYFFMCVSTSIHAWKYCFPVMSVE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACTCCATGCCGCCAGTTGGTTTGCTGAATGTTGTGGTTCTATTCAGTGGGAGGTGGGATGAAAACAATCGGTACAATGGGTTTAAGTCCGACAGTGTGCCAGTACC
GGAGGAATGCACAATACAAGAGTTCAATGAATGTATCCGAAGCAAGGTATTTCCATCGGACGAGCACATGATCACTCGGTTAACCATGTACAAGAATGGTATCAACAAGG
CTAATATAATCCGGATCACTGACGACAGGGATGTTACTTGGGTCATGTCCAACATTGGCGATGGGATGGCTAGTGACATATGCGTTGTGGCTGACCACTGTATGGAGGGG
CGGAAACTTGCACTTTACTGCCATCAGTGGGTCACCCGAAGCGTCGTATGCACTAATCCTTGTTTTCTCTGTTGCCCTGATCGAGAAAACCCAGTTATGACAAGGTATGG
AGGGGGCAGAAACTTGCACTTTACTGCCATCAGAGGGTCACCCGAAGCGTCGTATGCACTAATCCTTGTTTTCTCTGTTGCCCTGATCGAGAAAAACCCAGGTGCATACA
CTGCTTTTGATGTTGACGATGAGGGCAAGTTCAGGTACTTTTTCATGTGTGTCTCTACGTCCATACATGCATGGAAATACTGTTTTCCTGTTATGTCGGTTGAAGAGGTA
GATTTGGTTTTCAGAGATACACCCCCACAACAATATGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCACTCCATGCCGCCAGTTGGTTTGCTGAATGTTGTGGTTCTATTCAGTGGGAGGTGGGATGAAAACAATCGGTACAATGGGTTTAAGTCCGACAGTGTGCCAGTACC
GGAGGAATGCACAATACAAGAGTTCAATGAATGTATCCGAAGCAAGGTATTTCCATCGGACGAGCACATGATCACTCGGTTAACCATGTACAAGAATGGTATCAACAAGG
CTAATATAATCCGGATCACTGACGACAGGGATGTTACTTGGGTCATGTCCAACATTGGCGATGGGATGGCTAGTGACATATGCGTTGTGGCTGACCACTGTATGGAGGGG
CGGAAACTTGCACTTTACTGCCATCAGTGGGTCACCCGAAGCGTCGTATGCACTAATCCTTGTTTTCTCTGTTGCCCTGATCGAGAAAACCCAGTTATGACAAGGTATGG
AGGGGGCAGAAACTTGCACTTTACTGCCATCAGAGGGTCACCCGAAGCGTCGTATGCACTAATCCTTGTTTTCTCTGTTGCCCTGATCGAGAAAAACCCAGGTGCATACA
CTGCTTTTGATGTTGACGATGAGGGCAAGTTCAGGTACTTTTTCATGTGTGTCTCTACGTCCATACATGCATGGAAATACTGTTTTCCTGTTATGTCGGTTGAAGAGGTA
GATTTGGTTTTCAGAGATACACCCCCACAACAATATGCTTGA
Protein sequenceShow/hide protein sequence
MHSMPPVGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEECTIQEFNECIRSKVFPSDEHMITRLTMYKNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVADHCMEG
RKLALYCHQWVTRSVVCTNPCFLCCPDRENPVMTRYGGGRNLHFTAIRGSPEASYALILVFSVALIEKNPGAYTAFDVDDEGKFRYFFMCVSTSIHAWKYCFPVMSVEEV
DLVFRDTPPQQYA