; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0013549 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0013549
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDUF1990 domain-containing protein
Genome locationchr1:51166016..51166348
RNA-Seq ExpressionLag0013549
SyntenyLag0013549
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RXI06566.1 hypothetical protein DVH24_025702 [Malus domestica]9.1e-0565Show/hide
Query:  SFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHSTANR
        SFSKPAH+LS I  P V+L+ KYFAHQSTNA+ KH  A++
Subjt:  SFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHSTANR

TQD71959.1 hypothetical protein C1H46_042505 [Malus baccata]9.1e-0565Show/hide
Query:  SFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHSTANR
        SFSKPAH+LS I  P V+L+ KYFAHQSTNA+ KH  A++
Subjt:  SFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHSTANR

XP_022141808.1 UPF0548 protein At2g17695 [Momordica charantia]1.1e-0574.36Show/hide
Query:  SFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHSTAN
        SFSKPAHILS I+ P VIL+ KYFAHQS+NAV+K+STA+
Subjt:  SFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHSTAN

XP_038883220.1 UPF0548 protein At2g17695 isoform X1 [Benincasa hispida]3.1e-0573.68Show/hide
Query:  SFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHSTA
        SFSKPAHILS ++ P VIL+ KYFAHQSTNAV+K+ TA
Subjt:  SFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHSTA

XP_038883223.1 UPF0548 protein At2g17695 isoform X3 [Benincasa hispida]3.1e-0573.68Show/hide
Query:  SFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHSTA
        SFSKPAHILS ++ P VIL+ KYFAHQSTNAV+K+ TA
Subjt:  SFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHSTA

TrEMBL top hitse value%identityAlignment
A0A0A0KKV8 DUF1990 domain-containing protein5.8e-0570.27Show/hide
Query:  SFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHST
        SFSKPAHILS ++ P +IL+ KYFAHQSTNAV+K+ T
Subjt:  SFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHST

A0A498KGR7 DUF1990 domain-containing protein4.4e-0565Show/hide
Query:  SFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHSTANR
        SFSKPAH+LS I  P V+L+ KYFAHQSTNA+ KH  A++
Subjt:  SFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHSTANR

A0A540KCN0 DUF1990 domain-containing protein4.4e-0565Show/hide
Query:  SFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHSTANR
        SFSKPAH+LS I  P V+L+ KYFAHQSTNA+ KH  A++
Subjt:  SFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHSTANR

A0A6J1CKD3 UPF0548 protein At2g176955.2e-0674.36Show/hide
Query:  SFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHSTAN
        SFSKPAHILS I+ P VIL+ KYFAHQS+NAV+K+STA+
Subjt:  SFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHSTAN

A0A6J1GGC4 UPF0548 protein At2g176957.5e-0571.05Show/hide
Query:  SFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHSTA
        SFSKPAHILS ++ P VIL+ KYFA+QSTNAV+K+ TA
Subjt:  SFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHSTA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G17695.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1990 (InterPro:IPR018960); Has 259 Blast hits to 259 proteins in 120 species: Archae - 0; Bacteria - 197; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).3.7e-0453.85Show/hide
Query:  SFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHSTAN
        SFSKPAH LS +  P V L+ K+FA  S+ AV KH  A+
Subjt:  SFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHSTAN

AT2G17695.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1990 (InterPro:IPR018960); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).3.7e-0453.85Show/hide
Query:  SFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHSTAN
        SFSKPAH LS +  P V L+ K+FA  S+ AV KH  A+
Subjt:  SFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHSTAN

AT2G17695.3 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1990 (InterPro:IPR018960).3.7e-0453.85Show/hide
Query:  SFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHSTAN
        SFSKPAH LS +  P V L+ K+FA  S+ AV KH  A+
Subjt:  SFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHSTAN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCAAACAGAAACACCCAATCTGTCTCCTTTATTTCTGAAGAGTTCACTCAAACAATTTGCAATCTTCCTTTATTCCTGGCCAAAATTTTCCCAGATTCAGACTGG
TAATGTTTCCCATTTGAGATGGACAAGAACAACCAGGAATGGTATGAAATTCTCCTTCTCAAAGCCAGCCCACATATTATCAGTCATTACTAATCCCCAAGTAATTCTTC
AGTACAAGTATTTTGCTCATCAATCTACCAATGCAGTCCAGAAACATTCGACTGCTAATAGAGTTCCAGTAGATAACTTCTTCTTGCACAACACTGTTTCTAATGATCCT
TAG
mRNA sequenceShow/hide mRNA sequence
ATGGATCAAACAGAAACACCCAATCTGTCTCCTTTATTTCTGAAGAGTTCACTCAAACAATTTGCAATCTTCCTTTATTCCTGGCCAAAATTTTCCCAGATTCAGACTGG
TAATGTTTCCCATTTGAGATGGACAAGAACAACCAGGAATGGTATGAAATTCTCCTTCTCAAAGCCAGCCCACATATTATCAGTCATTACTAATCCCCAAGTAATTCTTC
AGTACAAGTATTTTGCTCATCAATCTACCAATGCAGTCCAGAAACATTCGACTGCTAATAGAGTTCCAGTAGATAACTTCTTCTTGCACAACACTGTTTCTAATGATCCT
TAG
Protein sequenceShow/hide protein sequence
MDQTETPNLSPLFLKSSLKQFAIFLYSWPKFSQIQTGNVSHLRWTRTTRNGMKFSFSKPAHILSVITNPQVILQYKYFAHQSTNAVQKHSTANRVPVDNFFLHNTVSNDP