CuGenDBv2

Gene ID	Lag0013673
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Genome location	chr1:51967184..51969880
RNA-Seq Expression	Lag0013673
Synteny	Lag0013673
Gene Ontology terms	NA
InterPro domains	IPR026960 - Reverse transcriptase zinc-binding domain

Homology

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GenBank top hits

e value

%identity

Alignment

RVW19550.1 putative ribonuclease H protein [Vitis vinifera]

2.7e-21

36.36

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Query:  PTSFGYFLELWKARIPKKIKFFIWTVIYRRLNTTDRLQQIFKSSALNPSCCPLCRAESDALDHIFVHCALTFDIW-RSFHLASGIHLPMPSQVNRICLEA
        PT F     +WK+++P K+K FIW V ++++NT D LQ      A++P  C LC  + ++ DH+F+HC++T  +W R F LA    +P P  ++ +    
Subjt:  PTSFGYFLELWKARIPKKIKFFIWTVIYRRLNTTDRLQQIFKSSALNPSCCPLCRAESDALDHIFVHCALTFDIW-RSFHLASGIHLPMPSQVNRICLEA

Query:  FAVRAKSQREILI-QSMFATILWVIWGERNRRIFHNTSRTSINIWEDIITLLSF
        +    KS+R +++ Q+    ++WV+W ERN RIF + +R S N+W+ I  L SF
Subjt:  FAVRAKSQREILI-QSMFATILWVIWGERNRRIFHNTSRTSINIWEDIITLLSF

RVW26228.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]

3.6e-21

36.73

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Query:  LELWKARIPKKIKFFIWTVIYRRLNTTDRLQQIFKSSALNPSCCPLCRAESDALDHIFVHCALTFDIW-RSFHLASGIHLPMPSQVNRICLEAFAVRAKS
        L +WK+++P K+K F+W V ++++NT D LQ      AL+P  C LC  + ++ DH+F+HC++T  +W R F LA    +P P  ++ +    +    KS
Subjt:  LELWKARIPKKIKFFIWTVIYRRLNTTDRLQQIFKSSALNPSCCPLCRAESDALDHIFVHCALTFDIW-RSFHLASGIHLPMPSQVNRICLEAFAVRAKS

Query:  QREILI-QSMFATILWVIWGERNRRIFHNTSRTSINIWEDIITLLSF
        +R +++ Q+    ++WV+W ERN RIF + +R S N+W+ I  L SF
Subjt:  QREILI-QSMFATILWVIWGERNRRIFHNTSRTSINIWEDIITLLSF

RVW70234.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]

2.1e-21

36.36

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Query:  PTSFGYFLELWKARIPKKIKFFIWTVIYRRLNTTDRLQQIFKSSALNPSCCPLCRAESDALDHIFVHCALTFDIW-RSFHLASGIHLPMPSQVNRICLEA
        PT F     +WK+++P K+K F+W V ++++NT D LQ      A++P  C LC  + ++ DHIF+HC++T  +W R F LA    +P P  ++ +    
Subjt:  PTSFGYFLELWKARIPKKIKFFIWTVIYRRLNTTDRLQQIFKSSALNPSCCPLCRAESDALDHIFVHCALTFDIW-RSFHLASGIHLPMPSQVNRICLEA

Query:  FAVRAKSQREILI-QSMFATILWVIWGERNRRIFHNTSRTSINIWEDIITLLSF
        +    KS+R +++ Q+    ++WV+W ERN RIF + +R S N+W+ I  L SF
Subjt:  FAVRAKSQREILI-QSMFATILWVIWGERNRRIFHNTSRTSINIWEDIITLLSF

RVW78885.1 Kinesin-like protein KIN-14I [Vitis vinifera]

1.2e-21

35.47

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Query:  PTSFGYFLELWKARIPKKIKFFIWTVIYRRLNTTDRLQQIFKSSALNPSCCPLCRAESDALDHIFVHCALTFDIW-RSFHLASGIHLPMPSQVNRICLEA
        PT F     +WK+++P K+K F+W V +++LNT D LQ      AL+P  C LC  + ++ DH+F+HC++T  +W R F LA    +P  S ++ + +  
Subjt:  PTSFGYFLELWKARIPKKIKFFIWTVIYRRLNTTDRLQQIFKSSALNPSCCPLCRAESDALDHIFVHCALTFDIW-RSFHLASGIHLPMPSQVNRICLEA

Query:  FAVRAKSQREILIQSMFATILWVIWGERNRRIFHNTSRTSINIWEDIITLLSF------GHLPQKLCPTIRL
               +  IL Q+    ++WV+W ERN RIF + +R S N+W+ I  L SF       +L Q+L   I+L
Subjt:  FAVRAKSQREILIQSMFATILWVIWGERNRRIFHNTSRTSINIWEDIITLLSF------GHLPQKLCPTIRL

RVW98432.1 Cation-chloride cotransporter 1 [Vitis vinifera]

3.6e-21

28.14

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Query:  DKEPIERNSLLDTEIAIFTVEPLKEPAQWYCNNQTATYSSTRSFESPVSEEITDRDGEGEPEVPENFKPIEIFNLNSHRED-------FSNDFKVSLAKR
        D+ P     ++D  + I+++  L  P  W  N                  ++TD + E   ++    + I+  NL++   D        S  F V     
Subjt:  DKEPIERNSLLDTEIAIFTVEPLKEPAQWYCNNQTATYSSTRSFESPVSEEITDRDGEGEPEVPENFKPIEIFNLNSHRED-------FSNDFKVSLAKR

Query:  KTSVICRSTPTSFGYFLELWKARIPKKIKFFIWTVIYRRLNTTDRLQQIFKSSALNPSCCPLCRAESDALDHIFVHCALTFDIW-RSFHLASGIHLPMPS
          S    S+P     F  +WK+++P K+K F+W V ++++NT D LQ      AL+P  C LC  + ++ DH+F+HC++T  +W R F LA    +P P 
Subjt:  KTSVICRSTPTSFGYFLELWKARIPKKIKFFIWTVIYRRLNTTDRLQQIFKSSALNPSCCPLCRAESDALDHIFVHCALTFDIW-RSFHLASGIHLPMPS

Query:  QVNRICLEAFAVRAKSQREILI-QSMFATILWVIWGERNRRIFHNTSRTSINIWEDIITLLSF
         ++ +    +    KS+R +++ Q+    ++WV+W ERN RIF + +R S N+W+ I  + SF
Subjt:  QVNRICLEAFAVRAKSQREILI-QSMFATILWVIWGERNRRIFHNTSRTSINIWEDIITLLSF

TrEMBL top hits

e value

%identity

Alignment

A0A438C8I4 Putative ribonuclease H protein

1.3e-21

36.36

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Query:  PTSFGYFLELWKARIPKKIKFFIWTVIYRRLNTTDRLQQIFKSSALNPSCCPLCRAESDALDHIFVHCALTFDIW-RSFHLASGIHLPMPSQVNRICLEA
        PT F     +WK+++P K+K FIW V ++++NT D LQ      A++P  C LC  + ++ DH+F+HC++T  +W R F LA    +P P  ++ +    
Subjt:  PTSFGYFLELWKARIPKKIKFFIWTVIYRRLNTTDRLQQIFKSSALNPSCCPLCRAESDALDHIFVHCALTFDIW-RSFHLASGIHLPMPSQVNRICLEA

Query:  FAVRAKSQREILI-QSMFATILWVIWGERNRRIFHNTSRTSINIWEDIITLLSF
        +    KS+R +++ Q+    ++WV+W ERN RIF + +R S N+W+ I  L SF
Subjt:  FAVRAKSQREILI-QSMFATILWVIWGERNRRIFHNTSRTSINIWEDIITLLSF

A0A438CSQ5 Transposon TX1 uncharacterized 149 kDa protein

1.7e-21

36.73

Show/hide

Query:  LELWKARIPKKIKFFIWTVIYRRLNTTDRLQQIFKSSALNPSCCPLCRAESDALDHIFVHCALTFDIW-RSFHLASGIHLPMPSQVNRICLEAFAVRAKS
        L +WK+++P K+K F+W V ++++NT D LQ      AL+P  C LC  + ++ DH+F+HC++T  +W R F LA    +P P  ++ +    +    KS
Subjt:  LELWKARIPKKIKFFIWTVIYRRLNTTDRLQQIFKSSALNPSCCPLCRAESDALDHIFVHCALTFDIW-RSFHLASGIHLPMPSQVNRICLEAFAVRAKS

Query:  QREILI-QSMFATILWVIWGERNRRIFHNTSRTSINIWEDIITLLSF
        +R +++ Q+    ++WV+W ERN RIF + +R S N+W+ I  L SF
Subjt:  QREILI-QSMFATILWVIWGERNRRIFHNTSRTSINIWEDIITLLSF

A0A438GDF3 LINE-1 retrotransposable element ORF2 protein

1.0e-21

36.36

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Query:  PTSFGYFLELWKARIPKKIKFFIWTVIYRRLNTTDRLQQIFKSSALNPSCCPLCRAESDALDHIFVHCALTFDIW-RSFHLASGIHLPMPSQVNRICLEA
        PT F     +WK+++P K+K F+W V ++++NT D LQ      A++P  C LC  + ++ DHIF+HC++T  +W R F LA    +P P  ++ +    
Subjt:  PTSFGYFLELWKARIPKKIKFFIWTVIYRRLNTTDRLQQIFKSSALNPSCCPLCRAESDALDHIFVHCALTFDIW-RSFHLASGIHLPMPSQVNRICLEA

Query:  FAVRAKSQREILI-QSMFATILWVIWGERNRRIFHNTSRTSINIWEDIITLLSF
        +    KS+R +++ Q+    ++WV+W ERN RIF + +R S N+W+ I  L SF
Subjt:  FAVRAKSQREILI-QSMFATILWVIWGERNRRIFHNTSRTSINIWEDIITLLSF

A0A438H315 Kinesin-like protein KIN-14I

6.0e-22

35.47

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Query:  PTSFGYFLELWKARIPKKIKFFIWTVIYRRLNTTDRLQQIFKSSALNPSCCPLCRAESDALDHIFVHCALTFDIW-RSFHLASGIHLPMPSQVNRICLEA
        PT F     +WK+++P K+K F+W V +++LNT D LQ      AL+P  C LC  + ++ DH+F+HC++T  +W R F LA    +P  S ++ + +  
Subjt:  PTSFGYFLELWKARIPKKIKFFIWTVIYRRLNTTDRLQQIFKSSALNPSCCPLCRAESDALDHIFVHCALTFDIW-RSFHLASGIHLPMPSQVNRICLEA

Query:  FAVRAKSQREILIQSMFATILWVIWGERNRRIFHNTSRTSINIWEDIITLLSF------GHLPQKLCPTIRL
               +  IL Q+    ++WV+W ERN RIF + +R S N+W+ I  L SF       +L Q+L   I+L
Subjt:  FAVRAKSQREILIQSMFATILWVIWGERNRRIFHNTSRTSINIWEDIITLLSF------GHLPQKLCPTIRL

A0A438INY9 Cation-chloride cotransporter 1

1.7e-21

28.14

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Query:  DKEPIERNSLLDTEIAIFTVEPLKEPAQWYCNNQTATYSSTRSFESPVSEEITDRDGEGEPEVPENFKPIEIFNLNSHRED-------FSNDFKVSLAKR
        D+ P     ++D  + I+++  L  P  W  N                  ++TD + E   ++    + I+  NL++   D        S  F V     
Subjt:  DKEPIERNSLLDTEIAIFTVEPLKEPAQWYCNNQTATYSSTRSFESPVSEEITDRDGEGEPEVPENFKPIEIFNLNSHRED-------FSNDFKVSLAKR

Query:  KTSVICRSTPTSFGYFLELWKARIPKKIKFFIWTVIYRRLNTTDRLQQIFKSSALNPSCCPLCRAESDALDHIFVHCALTFDIW-RSFHLASGIHLPMPS
          S    S+P     F  +WK+++P K+K F+W V ++++NT D LQ      AL+P  C LC  + ++ DH+F+HC++T  +W R F LA    +P P 
Subjt:  KTSVICRSTPTSFGYFLELWKARIPKKIKFFIWTVIYRRLNTTDRLQQIFKSSALNPSCCPLCRAESDALDHIFVHCALTFDIW-RSFHLASGIHLPMPS

Query:  QVNRICLEAFAVRAKSQREILI-QSMFATILWVIWGERNRRIFHNTSRTSINIWEDIITLLSF
         ++ +    +    KS+R +++ Q+    ++WV+W ERN RIF + +R S N+W+ I  + SF
Subjt:  QVNRICLEAFAVRAKSQREILI-QSMFATILWVIWGERNRRIFHNTSRTSINIWEDIITLLSF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G04650.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

7.2e-12

30.61

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Query:  WKARIPKKIKFFIWTVIYRRLNTTDRLQQIFKSSALNPSCCPLCRAESDALDHIFVHCALTFDIWRSFHLASGIHLP-----------MPSQVNRICLEA
        +K  +PK   F  W V + RL+T DRLQ    S    P+ C LC A  D+  H+F  C  +  +WR F  ++ ++ P            PS+   ICL  
Subjt:  WKARIPKKIKFFIWTVIYRRLNTTDRLQQIFKSSALNPSCCPLCRAESDALDHIFVHCALTFDIWRSFHLASGIHLP-----------MPSQVNRICLEA

Query:  FAVRAKSQREILIQSMFATILWVIWGERNRRIFHNTSRTSINIWEDI
                   +I+  F + ++ IW ERN+R+    SR++ +I +DI
Subjt:  FAVRAKSQREILIQSMFATILWVIWGERNRRIFHNTSRTSINIWEDI

AT4G05095.1 BEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase)-related family protein (TAIR:AT4G04650.1)

1.8e-07

26.67

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Query:  PSCCPLCRAESDALDHIFVHCALTFDIWRSFHLASGIHLPMPSQVNRICLEAFAVRAKSQR-EILIQSMFATILWVIWGERNRRIFHNTSRTSINIWEDI
        PS C LC   ++  +H+F  C ++F +W +F   + +  P+   +   CL      ++     ++I+ +F   ++ +W ERNRR+  + SR+S  I ++I
Subjt:  PSCCPLCRAESDALDHIFVHCALTFDIWRSFHLASGIHLPMPSQVNRICLEAFAVRAKSQR-EILIQSMFATILWVIWGERNRRIFHNTSRTSINIWEDI

Query:  ITLLS
          +L+
Subjt:  ITLLS

Sequences

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CDS sequence

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ATGGTACACGAAGAATTACATTGCCCAAATGTTGATAAGGAGCCCATAGAGCGCAACAGCCTTCTCGACACTGAGATTGCCATATTTACAGTCGAACCACTGAAAGAGCC
GGCGCAGTGGTATTGCAACAATCAGACAGCTACCTATTCATCTACAAGATCATTCGAATCCCCAGTCAGTGAGGAAATAACTGATAGAGATGGAGAAGGTGAGCCAGAAG
TTCCAGAGAACTTTAAACCCATAGAAATATTCAACTTAAATTCGCACCGCGAAGATTTTAGTAATGACTTTAAGGTATCCTTAGCAAAGAGAAAAACGAGTGTGATATGC
AGATCGACTCCAACCTCATTCGGTTATTTTCTCGAACTATGGAAGGCTCGGATTCCGAAAAAGATAAAGTTCTTCATTTGGACTGTTATCTATAGAAGATTAAATACAAC
AGACAGACTTCAACAAATTTTCAAGTCCTCTGCCTTGAATCCGAGCTGTTGTCCCCTTTGTCGTGCTGAATCGGATGCCCTGGATCACATTTTTGTCCATTGTGCCCTTA
CTTTTGATATTTGGCGCTCTTTTCATCTAGCTTCTGGTATTCATTTGCCAATGCCTAGCCAAGTTAATCGAATATGTCTGGAGGCTTTTGCTGTCAGGGCTAAATCGCAG
AGGGAGATTCTTATTCAGTCCATGTTTGCAACTATTCTCTGGGTTATTTGGGGCGAGCGTAATAGACGAATTTTCCATAATACTTCTCGGACCTCCATCAATATTTGGGA
AGATATCATTACGCTTTTGTCCTTTGGGCATCTTCCACAAAAGCTTTGTCCAACTATCAGGCTTCATCTATTGCTTTGA

mRNA sequence

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Protein sequence

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MVHEELHCPNVDKEPIERNSLLDTEIAIFTVEPLKEPAQWYCNNQTATYSSTRSFESPVSEEITDRDGEGEPEVPENFKPIEIFNLNSHREDFSNDFKVSLAKRKTSVIC
RSTPTSFGYFLELWKARIPKKIKFFIWTVIYRRLNTTDRLQQIFKSSALNPSCCPLCRAESDALDHIFVHCALTFDIWRSFHLASGIHLPMPSQVNRICLEAFAVRAKSQ
REILIQSMFATILWVIWGERNRRIFHNTSRTSINIWEDIITLLSFGHLPQKLCPTIRLHLLL

Lag0013673 (gene) of Sponge gourd (AG-4) v1 genome