CuGenDBv2

Gene ID	Lag0013675
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	chaperonin-like RBCX protein 1, chloroplastic
Genome location	chr1:51973445..51974623
RNA-Seq Expression	Lag0013675
Synteny	Lag0013675
Gene Ontology terms	GO:0006270 - DNA replication initiation (biological process) GO:0009409 - response to cold (biological process) GO:0009414 - response to water deprivation (biological process) GO:0009651 - response to salt stress (biological process) GO:0015977 - carbon fixation (biological process) GO:0015979 - photosynthesis (biological process) GO:0110102 - chloroplast ribulose bisphosphate carboxylase complex assembly (biological process) GO:0033314 - mitotic DNA replication checkpoint (biological process) GO:0061077 - chaperone-mediated protein folding (biological process) GO:0005664 - nuclear origin of replication recognition complex (cellular component) GO:0009534 - chloroplast thylakoid (cellular component) GO:0044183 - protein folding chaperone (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0003688 - DNA replication origin binding (molecular function)
InterPro domains	IPR038052 - Chaperonin-like RbcX superfamily IPR003435 - Chaperonin-like RbcX

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004134778.1 chaperonin-like RBCX protein 1, chloroplastic [Cucumis sativus]

3.6e-80

89.6

Show/hide

Query:  MESSARILSPTQFPSLFPLPNLNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH
        MESSARILSPTQFPSLF LPNLNR N+ PV P KP+A K MRLHC+KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIVTAQLESYN EAY ELMEFLDRH
Subjt:  MESSARILSPTQFPSLFPLPNLNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH

Query:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK
        SLNDGDKFLASLMRESSRHK+LALRILEVRSAYCKNDFEWDNLKRLAFKMV ESNTR+MREY+TETSPSDTEK
Subjt:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK

XP_008440039.1 PREDICTED: uncharacterized protein LOC103484635 [Cucumis melo]

1.9e-81

90.75

Show/hide

Query:  MESSARILSPTQFPSLFPLPNLNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH
        MESSARILSPTQFPS+F LPNLNR N+ PV P KP+ASKSMRLHC+KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIVTAQLESYN EAY ELMEFLDRH
Subjt:  MESSARILSPTQFPSLFPLPNLNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH

Query:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK
        SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMV ESNTR+MREY+TETSPSDTEK
Subjt:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK

XP_023003335.1 chaperonin-like RBCX protein 1, chloroplastic [Cucurbita maxima]

1.1e-81

91.33

Show/hide

Query:  MESSARILSPTQFPSLFPLPNLNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH
        MES ARILSPT FPSLFPLPNLNRSN +PVWPKKP+ASKS+RLHC+KMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYN EA+TELMEFLDRH
Subjt:  MESSARILSPTQFPSLFPLPNLNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH

Query:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK
        SLNDGDKFL++LMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLA KMV ESNTRLMREYVTETSP D EK
Subjt:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK

XP_023518339.1 chaperonin-like RBCX protein 1, chloroplastic [Cucurbita pepo subsp. pepo]

8.0e-80

89.02

Show/hide

Query:  MESSARILSPTQFPSLFPLPNLNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH
        MES ARILSPT FPS+FPLPNLNR N +PVWP+KP+ASKS+RLHC+KMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYN EA+ ELMEFLDRH
Subjt:  MESSARILSPTQFPSLFPLPNLNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH

Query:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK
        SLNDGDKFL++LMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLA KMV ESNTRLMREYVTETSP D EK
Subjt:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK

XP_038881664.1 chaperonin-like RBCX protein 1, chloroplastic isoform X1 [Benincasa hispida]

8.2e-85

93.64

Show/hide

Query:  MESSARILSPTQFPSLFPLPNLNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH
        ME SARILS TQFPSLFPLPNLNRSN+ PVWPKKPKA+KSMRLHC+KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIVTAQLESYN EAY ELMEFLDRH
Subjt:  MESSARILSPTQFPSLFPLPNLNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH

Query:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK
        SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMV ESNTRLMREYVTETSPSDTEK
Subjt:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KMZ4 Uncharacterized protein

1.7e-80

89.6

Show/hide

Query:  MESSARILSPTQFPSLFPLPNLNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH
        MESSARILSPTQFPSLF LPNLNR N+ PV P KP+A K MRLHC+KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIVTAQLESYN EAY ELMEFLDRH
Subjt:  MESSARILSPTQFPSLFPLPNLNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH

Query:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK
        SLNDGDKFLASLMRESSRHK+LALRILEVRSAYCKNDFEWDNLKRLAFKMV ESNTR+MREY+TETSPSDTEK
Subjt:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK

A0A1S3B054 uncharacterized protein LOC103484635

9.2e-82

90.75

Show/hide

Query:  MESSARILSPTQFPSLFPLPNLNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH
        MESSARILSPTQFPS+F LPNLNR N+ PV P KP+ASKSMRLHC+KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIVTAQLESYN EAY ELMEFLDRH
Subjt:  MESSARILSPTQFPSLFPLPNLNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH

Query:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK
        SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMV ESNTR+MREY+TETSPSDTEK
Subjt:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK

A0A5D3CNU4 Chaperonin-like RBCX protein 1

9.2e-82

90.75

Show/hide

Query:  MESSARILSPTQFPSLFPLPNLNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH
        MESSARILSPTQFPS+F LPNLNR N+ PV P KP+ASKSMRLHC+KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIVTAQLESYN EAY ELMEFLDRH
Subjt:  MESSARILSPTQFPSLFPLPNLNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH

Query:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK
        SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMV ESNTR+MREY+TETSPSDTEK
Subjt:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK

A0A6J1EFL9 chaperonin-like RBCX protein 1, chloroplastic

8.6e-80

89.6

Show/hide

Query:  MESSARILSPTQFPSLFPLPNLNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH
        MES ARILSPT FPSLFP PNLNRSN +PVWPKK +ASKS+RLHC+KMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYN EA+ ELMEFLDRH
Subjt:  MESSARILSPTQFPSLFPLPNLNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH

Query:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK
        SLNDGDKFL++LMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLA KMV ESNTRLMREYVTETSP D EK
Subjt:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK

A0A6J1KRH1 chaperonin-like RBCX protein 1, chloroplastic

5.4e-82

91.33

Show/hide

Query:  MESSARILSPTQFPSLFPLPNLNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH
        MES ARILSPT FPSLFPLPNLNRSN +PVWPKKP+ASKS+RLHC+KMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYN EA+TELMEFLDRH
Subjt:  MESSARILSPTQFPSLFPLPNLNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH

Query:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK
        SLNDGDKFL++LMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLA KMV ESNTRLMREYVTETSP D EK
Subjt:  SLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK

SwissProt top hits

e value

%identity

Alignment

Q44177 RuBisCO chaperone RbcX

8.7e-05

31.03

Show/hide

Query:  KAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESN---TR
        + A  L ++ TY AVR+++ QL   N      L EF  RH + + D +L ++M E   +K L LRIL VR    +   E+  L  +    + +SN    R
Subjt:  KAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESN---TR

Query:  LMREYVTETSPSDTEK
         + E +T+   S T++
Subjt:  LMREYVTETSPSDTEK

Q94AU9 Chaperonin-like RBCX protein 1, chloroplastic

3.5e-54

70.89

Show/hide

Query:  SNLSPVWPKKPKAS----------KSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRHSLNDGDKFLASLMR
        S L+P + K+P  S          K  R+  NKMYVPGFGEASPEAKAAK+LH+FFTYVAVRIV+AQLESYN EAY EL EFLD +S++DGDKF A+LMR
Subjt:  SNLSPVWPKKPKAS----------KSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRHSLNDGDKFLASLMR

Query:  ESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTE
         SSRH +LALRILEVRSAYCKNDFEWDN+KRLAFK VD+SNTRLMREYV ETS  +T+
Subjt:  ESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTE

Arabidopsis top hits

e value

%identity

Alignment

AT4G04330.1 Chaperonin-like RbcX protein

2.5e-55

70.89

Show/hide

Query:  SNLSPVWPKKPKAS----------KSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRHSLNDGDKFLASLMR
        S L+P + K+P  S          K  R+  NKMYVPGFGEASPEAKAAK+LH+FFTYVAVRIV+AQLESYN EAY EL EFLD +S++DGDKF A+LMR
Subjt:  SNLSPVWPKKPKAS----------KSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRHSLNDGDKFLASLMR

Query:  ESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTE
         SSRH +LALRILEVRSAYCKNDFEWDN+KRLAFK VD+SNTRLMREYV ETS  +T+
Subjt:  ESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTE

AT5G19855.1 Chaperonin-like RbcX protein

1.5e-04

35.45

Show/hide

Query:  KNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVR-SAYCKNDFEWDNLKRLAFKMVDESNTRLMREY
        K + N+FTY AVR V  QL   N   YT     +  +   DG +FL +L +ES   + LA R++  R   Y K   + D+ K   ++ + + N  LMRE 
Subjt:  KNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVR-SAYCKNDFEWDNLKRLAFKMVDESNTRLMREY

Query:  VTETS--PSD
        + ET   PSD
Subjt:  VTETS--PSD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAATCGTCTGCAAGGATTCTTTCCCCTACTCAATTCCCTTCTCTTTTCCCACTACCCAATTTGAACAGAAGCAATTTGTCTCCAGTTTGGCCAAAAAAGCCGAAAGC
CTCCAAGTCTATGCGCTTGCATTGCAATAAGATGTATGTGCCCGGGTTTGGAGAAGCGTCACCGGAAGCAAAGGCAGCCAAAAATCTGCACAATTTCTTCACGTATGTTG
CTGTTAGGATCGTGACTGCGCAGCTTGAGAGCTATAATCTAGAGGCGTACACAGAGTTAATGGAGTTTCTTGATAGACATTCACTGAATGATGGGGACAAGTTCCTGGCC
AGTTTGATGCGGGAATCGTCAAGGCATAAGAGTCTTGCATTGCGCATACTAGAGGTTCGATCTGCATACTGCAAAAACGATTTCGAATGGGACAACCTCAAGCGATTAGC
TTTCAAAATGGTTGATGAATCCAACACGAGACTGATGAGGGAATATGTCACAGAGACAAGTCCATCGGATACTGAGAAGTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MESSARILSPTQFPSLFPLPNLNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRHSLNDGDKFLA
SLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK

Lag0013675 (gene) of Sponge gourd (AG-4) v1 genome