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Lag0013729 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0013729
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr1:52320789..52321112
RNA-Seq ExpressionLag0013729
SyntenyLag0013729
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3478601.1 reverse transcriptase [Gossypium australe]1.2e-0448.28Show/hide
Query:  IESDSLSVINVLKGESEDLSEIKPISDEISFLTSRFPAVSFLHCRRESNSVAHCVARE
        +E DSLSVI  +K   ED S ++PI+  I  L +RF  +S+LH RR +N VAH +A+E
Subjt:  IESDSLSVINVLKGESEDLSEIKPISDEISFLTSRFPAVSFLHCRRESNSVAHCVARE

KAF7049447.1 hypothetical protein CFC21_057983 [Triticum aestivum]5.2e-0532.65Show/hide
Query:  ISRNWDIKWLESKAILEGLKAIFNTCLESRIS---LEIESDSLSVINVLKGESEDLSEIKPISDEISFLTSRFPAVSFLHCRRESNSVAHCVAREAVV
        + RNW I W     I E +   F   L  ++    L I SD++ VI+ +K   +    +  + ++  FL   FP   F HC R +N VAH +AR A V
Subjt:  ISRNWDIKWLESKAILEGLKAIFNTCLESRIS---LEIESDSLSVINVLKGESEDLSEIKPISDEISFLTSRFPAVSFLHCRRESNSVAHCVAREAVV

XP_023897448.1 uncharacterized protein LOC112009346 [Quercus suber]2.3e-0537.93Show/hide
Query:  LESKAILEGLKAIFNTCLESRISLEIESDSLSVINVLKGESEDLSEIKPISDEISFLTSRFPAVSFLHCRRESNSVAHCVAREAVVF
        +E+ A    L+    T L   +   +E DSL ++N LK  S  L++   I ++I +L  +FP +SF H RR  NSVAH +AR A+ F
Subjt:  LESKAILEGLKAIFNTCLESRISLEIESDSLSVINVLKGESEDLSEIKPISDEISFLTSRFPAVSFLHCRRESNSVAHCVAREAVVF

XP_023904539.1 uncharacterized protein LOC112016250 [Quercus suber]2.3e-0537.93Show/hide
Query:  LESKAILEGLKAIFNTCLESRISLEIESDSLSVINVLKGESEDLSEIKPISDEISFLTSRFPAVSFLHCRRESNSVAHCVAREAVVF
        +E+ A    L+    T L   +   +E DSL ++  LK  S  L++   I ++I +L S+FP +SF H RR  NSVAH +AR A+ F
Subjt:  LESKAILEGLKAIFNTCLESRISLEIESDSLSVINVLKGESEDLSEIKPISDEISFLTSRFPAVSFLHCRRESNSVAHCVAREAVVF

XP_024200143.1 uncharacterized protein LOC112203399 [Rosa chinensis]8.9e-0541.18Show/hide
Query:  LESKAILEGLKAIFNTCLESRISLEIESDSLSVINVLKGESEDLSEIKPISDEISFLTSRFPAVSFLHCRRESNSVAHCVAREAV
        +E+ A+L GL+   +       +LE+E D+LSVIN     S+DLS    I DE+ FL   FP  S    +RE N VAH +A+EA+
Subjt:  LESKAILEGLKAIFNTCLESRISLEIESDSLSVINVLKGESEDLSEIKPISDEISFLTSRFPAVSFLHCRRESNSVAHCVAREAV

TrEMBL top hitse value%identityAlignment
A0A3B6IS41 RNase H domain-containing protein2.5e-0532.65Show/hide
Query:  ISRNWDIKWLESKAILEGLKAIFNTCLESRIS---LEIESDSLSVINVLKGESEDLSEIKPISDEISFLTSRFPAVSFLHCRRESNSVAHCVAREAVV
        + RNW I W     I E +   F   L  ++    L I SD++ VI+ +K   +    +  + ++  FL   FP   F HC R +N VAH +AR A V
Subjt:  ISRNWDIKWLESKAILEGLKAIFNTCLESRIS---LEIESDSLSVINVLKGESEDLSEIKPISDEISFLTSRFPAVSFLHCRRESNSVAHCVAREAVV

A0A5B6W9Y0 Reverse transcriptase5.6e-0548.28Show/hide
Query:  IESDSLSVINVLKGESEDLSEIKPISDEISFLTSRFPAVSFLHCRRESNSVAHCVARE
        +E DSLSVI  +K   ED S ++PI+  I  L +RF  +S+LH RR +N VAH +A+E
Subjt:  IESDSLSVINVLKGESEDLSEIKPISDEISFLTSRFPAVSFLHCRRESNSVAHCVARE

A0A6P9ERQ1 uncharacterized protein LOC1183485955.6e-0541.57Show/hide
Query:  LESKAILEGLKAIFNTCLESRIS-LEIESDSLSVINVLKGESEDLSEIKPISDEISFLTSRFPAVSFLHCRRESNSVAHCVAREAVVFD
        +E  A+L GL+     C   RIS LE+ESDSL V+  L  E E +S    +  EI  +  RFP V   H  R +N+VAHC+AR++   D
Subjt:  LESKAILEGLKAIFNTCLESRIS-LEIESDSLSVINVLKGESEDLSEIKPISDEISFLTSRFPAVSFLHCRRESNSVAHCVAREAVVFD

A0A803QID8 Uncharacterized protein5.6e-0534.31Show/hide
Query:  KKISRNWDIKWLESKAILEGLKAIFNTCLESRISLEIESDSLSVINVLKGESEDLSEIKPISDEISFLTSRFPAVSFLHCRRESNSVAHCVAREAVVFDF
        K I  N+    +E+KA+   L  ++ + LE ++  +IE+D++ V N L G S  +S    + +++S L S FP VS +H +R +N  AH +AR A+  D 
Subjt:  KKISRNWDIKWLESKAILEGLKAIFNTCLESRISLEIESDSLSVINVLKGESEDLSEIKPISDEISFLTSRFPAVSFLHCRRESNSVAHCVAREAVVFDF

Query:  CC
         C
Subjt:  CC

A0A803QK36 Uncharacterized protein1.2e-0439.13Show/hide
Query:  LESKAILEGLKAIFNTCLESRISLE-IESDSLSVINVLKGESEDLSEIKPISDEISFLTSRFPAVSFLHCRRESNSVAHCVAREAVVFDFCC
        +E+ AI  GLK +    L  R++++ IESDSL V+N LK   + LS    I ++I+FL S FP     H  R +N+ AH +A+ A+  D  C
Subjt:  LESKAILEGLKAIFNTCLESRISLE-IESDSLSVINVLKGESEDLSEIKPISDEISFLTSRFPAVSFLHCRRESNSVAHCVAREAVVFDFCC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein2.1e-0432.04Show/hide
Query:  DIKWLESKAILEGLKAIFNTCLESR----ISLE--------IESDSLSVINVLKGESEDLSEIKPISDEISFLTSRFPAVSFLHCRRESNSVAHCVAREA
        ++KW+ ++A L  LK++    LE+     +SL          ESDS  +I +L  + E    +KP   ++  L S+F  V F+   RE N++A  VARE+
Subjt:  DIKWLESKAILEGLKAIFNTCLESR----ISLE--------IESDSLSVINVLKGESEDLSEIKPISDEISFLTSRFPAVSFLHCRRESNSVAHCVAREA

Query:  VVF
        + F
Subjt:  VVF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAAAATCTCACGAAATTGGGACATCAAATGGCTGGAATCAAAAGCAATTCTTGAAGGTCTGAAAGCGATCTTCAATACTTGCCTAGAATCGAGAATTTCCCTTGA
AATCGAATCGGATTCGCTTTCGGTCATCAACGTGTTGAAAGGGGAATCTGAAGATCTTTCGGAAATCAAACCCATATCCGACGAGATCAGCTTCCTAACTTCCCGCTTCC
CAGCCGTTTCTTTTCTCCATTGCAGAAGAGAATCCAACTCAGTGGCCCACTGTGTAGCTAGGGAGGCAGTGGTTTTTGATTTTTGTTGTAATCAGGGATCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAAAAATCTCACGAAATTGGGACATCAAATGGCTGGAATCAAAAGCAATTCTTGAAGGTCTGAAAGCGATCTTCAATACTTGCCTAGAATCGAGAATTTCCCTTGA
AATCGAATCGGATTCGCTTTCGGTCATCAACGTGTTGAAAGGGGAATCTGAAGATCTTTCGGAAATCAAACCCATATCCGACGAGATCAGCTTCCTAACTTCCCGCTTCC
CAGCCGTTTCTTTTCTCCATTGCAGAAGAGAATCCAACTCAGTGGCCCACTGTGTAGCTAGGGAGGCAGTGGTTTTTGATTTTTGTTGTAATCAGGGATCTTAA
Protein sequenceShow/hide protein sequence
MKKISRNWDIKWLESKAILEGLKAIFNTCLESRISLEIESDSLSVINVLKGESEDLSEIKPISDEISFLTSRFPAVSFLHCRRESNSVAHCVAREAVVFDFCCNQGS