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Lag0013730 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0013730
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNA-directed DNA polymerase reverse transcriptase family protein
Genome locationchr1:52321164..52322287
RNA-Seq ExpressionLag0013730
SyntenyLag0013730
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015388020.1 uncharacterized protein LOC107177951 [Citrus sinensis]1.6e-1652.63Show/hide
Query:  MGFRQISSFNQAMLAKQSWRLIRNPDSILFKILKGRYFKDGNFLEAPIGTSSSSTWRSICWGRELFIKGKGWTNRD
        +GFR +SSFNQA++AKQSWR+I+ P+S+L +++K +YF+   F+EA +G++ S  WRSI WGRE+  KG  W  RD
Subjt:  MGFRQISSFNQAMLAKQSWRLIRNPDSILFKILKGRYFKDGNFLEAPIGTSSSSTWRSICWGRELFIKGKGWTNRD

XP_015388578.1 uncharacterized protein LOC107178209 [Citrus sinensis]1.6e-1656.94Show/hide
Query:  MGFRQISSFNQAMLAKQSWRLIRNPDSILFKILKGRYFKDGNFLEAPIGTSSSSTWRSICWGRELFIKGKGW
        +GFR ISSFNQA++AKQSWR+I++ +S++ ++LK RYFK   FL A IGT+ S  WRSI WGR++ +KG  W
Subjt:  MGFRQISSFNQAMLAKQSWRLIRNPDSILFKILKGRYFKDGNFLEAPIGTSSSSTWRSICWGRELFIKGKGW

XP_022145148.1 uncharacterized protein LOC111014662 [Momordica charantia]2.3e-1856.94Show/hide
Query:  MGFRQISSFNQAMLAKQSWRLIRNPDSILFKILKGRYFKDGNFLEAPIGTSSSSTWRSICWGRELFIKGKGW
        +GF+ +  FNQAMLAKQSW++I+NP+S+L ++L+G+YFK GNF+ A +G++ S  WRSI WG+ELF+KG  W
Subjt:  MGFRQISSFNQAMLAKQSWRLIRNPDSILFKILKGRYFKDGNFLEAPIGTSSSSTWRSICWGRELFIKGKGW

XP_022155286.1 uncharacterized protein LOC111022423 [Momordica charantia]2.7e-1965.28Show/hide
Query:  MGFRQISSFNQAMLAKQSWRLIRNPDSILFKILKGRYFKDGNFLEAPIGTSSSSTWRSICWGRELFIKGKGW
        MGFR IS FNQAMLAKQSWR++R+PDS+L K L+G+YFK G+FL+A +G   S  WRSI WGR+LF KG  W
Subjt:  MGFRQISSFNQAMLAKQSWRLIRNPDSILFKILKGRYFKDGNFLEAPIGTSSSSTWRSICWGRELFIKGKGW

XP_030495270.1 uncharacterized protein LOC115711072 [Cannabis sativa]4.3e-1734.66Show/hide
Query:  MGFRQISSFNQAMLAKQSWRLIRNPDSILFKILKGRYFKDGNFLEAPIGTSSSSTWRSICWGRELFIKGKGW---------TNRDYWSWLVENLNGEDLA
        MGFR    FNQA+LAKQ+WR+   PD++L ++LK RYF + +FLEA IG S S TW+SICWG+EL +KG  +         + +D W     N    D+ 
Subjt:  MGFRQISSFNQAMLAKQSWRLIRNPDSILFKILKGRYFKDGNFLEAPIGTSSSSTWRSICWGRELFIKGKGW---------TNRDYWSWLVENLNGEDLA

Query:  RGAIIMWSLWNIRNKTQATNSRPAEDQLRNSIEENIREWQASYLKNEKPKKARNQASQEQWRNPEPNCWKLNVDAA
        R   I  + +   ++    +S      ++           A+ L+++      N+ +   WR P+ N + LNVDAA
Subjt:  RGAIIMWSLWNIRNKTQATNSRPAEDQLRNSIEENIREWQASYLKNEKPKKARNQASQEQWRNPEPNCWKLNVDAA

TrEMBL top hitse value%identityAlignment
A0A6J1CV63 uncharacterized protein LOC1110146621.1e-1856.94Show/hide
Query:  MGFRQISSFNQAMLAKQSWRLIRNPDSILFKILKGRYFKDGNFLEAPIGTSSSSTWRSICWGRELFIKGKGW
        +GF+ +  FNQAMLAKQSW++I+NP+S+L ++L+G+YFK GNF+ A +G++ S  WRSI WG+ELF+KG  W
Subjt:  MGFRQISSFNQAMLAKQSWRLIRNPDSILFKILKGRYFKDGNFLEAPIGTSSSSTWRSICWGRELFIKGKGW

A0A6J1DRA0 uncharacterized protein LOC1110224231.3e-1965.28Show/hide
Query:  MGFRQISSFNQAMLAKQSWRLIRNPDSILFKILKGRYFKDGNFLEAPIGTSSSSTWRSICWGRELFIKGKGW
        MGFR IS FNQAMLAKQSWR++R+PDS+L K L+G+YFK G+FL+A +G   S  WRSI WGR+LF KG  W
Subjt:  MGFRQISSFNQAMLAKQSWRLIRNPDSILFKILKGRYFKDGNFLEAPIGTSSSSTWRSICWGRELFIKGKGW

A0A803P4P2 Uncharacterized protein2.7e-1729.72Show/hide
Query:  MGFRQISSFNQAMLAKQSWRLIRNPDSILFKILKGRYFKDGNFLEAPIGTSSSSTWRSICWGRELFIKGKGW---------TNRDYW-------------
        +GFR +   NQAM+AKQ+WR++ NP+S+L  ILK ++FK  NFLEA +G S S TW S+ WGR+L  +G  W         T  ++W             
Subjt:  MGFRQISSFNQAMLAKQSWRLIRNPDSILFKILKGRYFKDGNFLEAPIGTSSSSTWRSICWGRELFIKGKGW---------TNRDYW-------------

Query:  --------------------SWLV---ENLNGEDLARGAIIMWSLWNIRNKTQATNSRPAEDQLRNSIEENIREWQASYLKNEKPKKARNQASQEQWRNP
                             +L+    +L+ EDL      +W++WN RNK    N   +   +   I   + ++ A+ +  +K   +      EQ +  
Subjt:  --------------------SWLV---ENLNGEDLARGAIIMWSLWNIRNKTQATNSRPAEDQLRNSIEENIREWQASYLKNEKPKKARNQASQEQWRNP

Query:  EPNCWKLNVDAA
         P  ++LN DAA
Subjt:  EPNCWKLNVDAA

A0A803PKA4 Uncharacterized protein2.1e-1737.5Show/hide
Query:  MGFRQISSFNQAMLAKQSWRLIRNPDSILFKILKGRYFKDGNFLEAPIGTSSSSTWRSICWGRELFIKGKGWTNRDYWSWLVENLNGEDLARGAIIMWSL
        +GFR    FNQA+LAKQ+WRL +NP+S+L+++LKGRYF   +FL A    +SS TW+ ICWGREL  KG      +Y +   E                 
Subjt:  MGFRQISSFNQAMLAKQSWRLIRNPDSILFKILKGRYFKDGNFLEAPIGTSSSSTWRSICWGRELFIKGKGWTNRDYWSWLVENLNGEDLARGAIIMWSL

Query:  WNIRNKTQATNSRPAEDQLRNSIEENIRE----WQAS----YLKNEKPKKARNQASQEQWRNPEPNCWKLNVDAAW
        WNI   T   +S   E  L   +  +       W  +    YL    P  A    S++ W  P P C KLNVDAA+
Subjt:  WNIRNKTQATNSRPAEDQLRNSIEENIRE----WQAS----YLKNEKPKKARNQASQEQWRNPEPNCWKLNVDAAW

A0A803PZ52 Uncharacterized protein2.1e-1733.16Show/hide
Query:  MGFRQISSFNQAMLAKQSWRLIRNPDSILFKILKGRYFKDGNFLEAPIGTSSSSTWRSICWGRELFIK-----------GKGW----------TNR--DY
        +GFR +   NQAM+AKQ+WR++ NP+S L  ILK +YFK   F EA +G S S TW S+ WGR+L  +            K W          T+R  D 
Subjt:  MGFRQISSFNQAMLAKQSWRLIRNPDSILFKILKGRYFKDGNFLEAPIGTSSSSTWRSICWGRELFIK-----------GKGW----------TNR--DY

Query:  WSWLV---ENLNGEDLARGAIIMWSLWNIRNKTQATNSRPAEDQLRNSIEENIREWQASYLKNEKPKKARNQASQEQWRNPEPNCWKLNVDAA
          +L+    +LN EDL      +W++WN+RNK    N   +   + + I   + ++ A+ L   K   ++      Q +   P  ++LN DAA
Subjt:  WSWLV---ENLNGEDLARGAIIMWSLWNIRNKTQATNSRPAEDQLRNSIEENIREWQASYLKNEKPKKARNQASQEQWRNPEPNCWKLNVDAA

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657508.8e-0535.24Show/hide
Query:  MGFRQISSFNQAMLAKQSWRLIRNPDSILFKILKGRY----FKDGNFLEAPIGTSSSSTWRSICWG-RELFIKGKGWTNRD-----YWS--W-----LVE
        +G R   S N+A+++K  WRL++  +S+   +L+ +Y     +D  +L  P G S SSTWRSI  G R++   G GW   D     +W+  W     L+E
Subjt:  MGFRQISSFNQAMLAKQSWRLIRNPDSILFKILKGRY----FKDGNFLEAPIGTSSSSTWRSICWG-RELFIKGKGWTNRD-----YWS--W-----LVE

Query:  NLNGE
          NGE
Subjt:  NLNGE

P93295 Uncharacterized mitochondrial protein AtMg003105.1e-1347.83Show/hide
Query:  MGFRQISSFNQAMLAKQSWRLIRNPDSILFKILKGRYFKDGNFLEAPIGTSSSSTWRSICWGRELFIKG
        +GFR +  FNQA+LAKQS+R+I  P ++L ++L+ RYF   + +E  +GT  S  WRSI  GREL  +G
Subjt:  MGFRQISSFNQAMLAKQSWRLIRNPDSILFKILKGRYFKDGNFLEAPIGTSSSSTWRSICWGRELFIKG

Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein7.6e-1240.58Show/hide
Query:  MGFRQISSFNQAMLAKQSWRLIRNPDSILFKILKGRYFKDGNFLEAPIGTSSSSTWRSICWGRELFIKG
        +GF+ I +FN A+L KQ WR++  P+S++ K+ K RYF   + L AP+G+  S  W+SI   +E+  +G
Subjt:  MGFRQISSFNQAMLAKQSWRLIRNPDSILFKILKGRYFKDGNFLEAPIGTSSSSTWRSICWGRELFIKG

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein3.6e-1447.83Show/hide
Query:  MGFRQISSFNQAMLAKQSWRLIRNPDSILFKILKGRYFKDGNFLEAPIGTSSSSTWRSICWGRELFIKG
        +GFR +  FNQA+LAKQS+R+I  P ++L ++L+ RYF   + +E  +GT  S  WRSI  GREL  +G
Subjt:  MGFRQISSFNQAMLAKQSWRLIRNPDSILFKILKGRYFKDGNFLEAPIGTSSSSTWRSICWGRELFIKG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTTTAGACAAATCTCTTCCTTCAACCAAGCCATGCTCGCGAAACAGAGTTGGAGACTTATAAGGAATCCAGACAGCATTCTCTTCAAGATTCTAAAGGGGAGATA
TTTCAAAGACGGGAATTTCCTTGAAGCCCCAATCGGAACCTCCTCATCATCAACTTGGAGAAGCATCTGTTGGGGCCGGGAATTATTTATAAAAGGGAAGGGATGGACGA
ATCGTGATTATTGGAGCTGGCTTGTCGAAAATCTAAACGGAGAGGACTTAGCAAGAGGAGCGATTATTATGTGGAGTTTGTGGAATATCAGAAACAAAACTCAAGCAACC
AATTCCAGACCAGCAGAAGATCAATTAAGAAATTCAATTGAAGAAAACATCCGAGAATGGCAAGCATCTTACCTTAAGAACGAGAAGCCGAAGAAGGCGAGGAACCAGGC
GAGTCAGGAGCAGTGGCGTAACCCAGAACCCAACTGTTGGAAATTGAATGTAGACGCAGCTTGGTTCGACAGATTGAACAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCTTTAGACAAATCTCTTCCTTCAACCAAGCCATGCTCGCGAAACAGAGTTGGAGACTTATAAGGAATCCAGACAGCATTCTCTTCAAGATTCTAAAGGGGAGATA
TTTCAAAGACGGGAATTTCCTTGAAGCCCCAATCGGAACCTCCTCATCATCAACTTGGAGAAGCATCTGTTGGGGCCGGGAATTATTTATAAAAGGGAAGGGATGGACGA
ATCGTGATTATTGGAGCTGGCTTGTCGAAAATCTAAACGGAGAGGACTTAGCAAGAGGAGCGATTATTATGTGGAGTTTGTGGAATATCAGAAACAAAACTCAAGCAACC
AATTCCAGACCAGCAGAAGATCAATTAAGAAATTCAATTGAAGAAAACATCCGAGAATGGCAAGCATCTTACCTTAAGAACGAGAAGCCGAAGAAGGCGAGGAACCAGGC
GAGTCAGGAGCAGTGGCGTAACCCAGAACCCAACTGTTGGAAATTGAATGTAGACGCAGCTTGGTTCGACAGATTGAACAAATGA
Protein sequenceShow/hide protein sequence
MGFRQISSFNQAMLAKQSWRLIRNPDSILFKILKGRYFKDGNFLEAPIGTSSSSTWRSICWGRELFIKGKGWTNRDYWSWLVENLNGEDLARGAIIMWSLWNIRNKTQAT
NSRPAEDQLRNSIEENIREWQASYLKNEKPKKARNQASQEQWRNPEPNCWKLNVDAAWFDRLNK