; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0013745 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0013745
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr1:52417224..52418543
RNA-Seq ExpressionLag0013745
SyntenyLag0013745
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFY85402.1 hypothetical protein Acr_04g0001400 [Actinidia rufa]4.7e-5243.13Show/hide
Query:  STATPTRPLNPNVPPFPQFQNPNPSVPAGFQYLPAQTSFLPVFQNFNPFYPSVHPSPSPFPTLTPPLNIKLTDSNYLLWKNQLLNHIIAFDMENFINGTP
        S +TP  P  P   P P    PNP                      NP   +  P P+  P++  PL +KL D NY++WK QLLN +IA  +E F++G+ 
Subjt:  STATPTRPLNPNVPPFPQFQNPNPSVPAGFQYLPAQTSFLPVFQNFNPFYPSVHPSPSPFPTLTPPLNIKLTDSNYLLWKNQLLNHIIAFDMENFINGTP

Query:  P-PPKFLDMAQSQVNPQFTFWQKLNRTLMSWIYSSLNEDKIGEIIGCSSAYEIWEHLRVVYESSSTARIMGLRSQLQKIRKDGLSVAQYLAQIKDVADKF
          PP+FLD  Q Q NP+F  WQ+ NR +MSWIY+S+NE  +G+I+G +SA +IWE L  +Y ++S A +  LR+ LQ I+K+GL+   Y+ + + + +  
Subjt:  P-PPKFLDMAQSQVNPQFTFWQKLNRTLMSWIYSSLNEDKIGEIIGCSSAYEIWEHLRVVYESSSTARIMGLRSQLQKIRKDGLSVAQYLAQIKDVADKF

Query:  SAIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRNDRPSLADVRSLLLAYEARLEKQTSVDS
        ++IGEP++Y DHL Y L GLG +YNPFVTSIQ++  RPS+ +V SLLL+Y+ARLE+Q++ D+
Subjt:  SAIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRNDRPSLADVRSLLLAYEARLEKQTSVDS

GFZ12741.1 UBX domain-containing protein [Actinidia rufa]1.3e-4936.75Show/hide
Query:  NPFYPSVHPSPSP----------FPTLTPPLNIKLTDSNYLLWKNQLLNHIIAFDMENFINGTPP-PPKFLDMAQSQVNPQFTFWQKLNRTLMSWIYSSL
        NP   S  P P+P           P++  PL +KL D NY++WK QLLN +IA  +E F++G+   PP+FLD  Q Q NP+F  WQ+ NR +MSWIY+S+
Subjt:  NPFYPSVHPSPSP----------FPTLTPPLNIKLTDSNYLLWKNQLLNHIIAFDMENFINGTPP-PPKFLDMAQSQVNPQFTFWQKLNRTLMSWIYSSL

Query:  NEDKIGEIIGCSSAYEIWEHLRVVYESSSTARIMGLRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRND
        NE  +G+I+G +SA +IWE L  +Y ++S A +  LR+ LQ I+K+GL+   Y+ + + + +  ++IGEP++Y DHL Y L GLG +YNPFVTSIQ++  
Subjt:  NEDKIGEIIGCSSAYEIWEHLRVVYESSSTARIMGLRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRND

Query:  RPSLADVRSLLLAYEARLEKQTSVDSLNVVQANLANFSMSSNQKRFQKNQPNTRSANPRPSSPFPFPQPFPTPLPGPSVLGRPQSSPRPQRWPISNPNRP
        RPS+ +  S            TS+      +    N   +SN     + Q    S +P PSSP P                                 RP
Subjt:  RPSLADVRSLLLAYEARLEKQTSVDSLNVVQANLANFSMSSNQKRFQKNQPNTRSANPRPSSPFPFPQPFPTPLPGPSVLGRPQSSPRPQRWPISNPNRP

Query:  QCQICGKLGHIALVCYNRHNPMYQAP------LNSSASPSSSFQPAISTKS
        +CQIC K GH A  CY+  N  YQ P       N+  +P+    P++ST S
Subjt:  QCQICGKLGHIALVCYNRHNPMYQAP------LNSSASPSSSFQPAISTKS

PON47862.1 hypothetical protein TorRG33x02_321990 [Trema orientale]3.0e-5144.73Show/hide
Query:  PSVHPSPSPFPTLTPPLNIKLTDSNYLLWKNQLLNHIIAFDMENFINGTPP-PPKFLDMAQSQVNPQFTFWQKLNRTLMSWIYSSLNEDKIGEIIGCSSA
        P + P P   P++  P  IKL   NYL+WKNQLLN IIA  +E+FI+G+ P PP+F D A+  VN ++  WQ+ NR +MSWIY+SL +  +G+I+G +SA
Subjt:  PSVHPSPSPFPTLTPPLNIKLTDSNYLLWKNQLLNHIIAFDMENFINGTPP-PPKFLDMAQSQVNPQFTFWQKLNRTLMSWIYSSLNEDKIGEIIGCSSA

Query:  YEIWEHLRVVYESSSTARIMGLRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRNDRPSLADVRSLLLAY
        +EIWE L  +Y SSS A+I  LR++LQ +RKDGL+  +Y+ + K++ +  +A+GEP+S +DHL Y+  GL  EYN FVTSI  R D   L ++ SLLL+Y
Subjt:  YEIWEHLRVVYESSSTARIMGLRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRNDRPSLADVRSLLLAY

Query:  EARLEKQTSVDSLNVVQANLANFSMSSNQKRFQKNQPN-----TRSANPRPSSPFPFPQPFPTPLPGPSVLGRPQ
        E RLE Q +   L+ +QANLA+ ++  N+K ++ N  N     T++   R +  F    P       PS+LG+PQ
Subjt:  EARLEKQTSVDSLNVVQANLANFSMSSNQKRFQKNQPN-----TRSANPRPSSPFPFPQPFPTPLPGPSVLGRPQ

RVW69807.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]1.3e-5441.59Show/hide
Query:  FQYLPAQTSFLPVFQNFNPFYPSVHPSPSPFPTLTPPLNIKLTDSNYLLWKNQLLNHIIAFDMENFIN-GTPPPPKFLDMAQSQVNPQFTFWQKLNRTLM
        F   PA  S      N NP  P +     P P+L+  L+IKL ++N LL K+QLLN IIA  +E+FI+     PPK+LD A  QVNP+F  W +LN+ +M
Subjt:  FQYLPAQTSFLPVFQNFNPFYPSVHPSPSPFPTLTPPLNIKLTDSNYLLWKNQLLNHIIAFDMENFIN-GTPPPPKFLDMAQSQVNPQFTFWQKLNRTLM

Query:  SWIYSSLNEDKIGEIIGCSSAYEIWEHLRVVYESSSTARIMGLRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSYRDHLGYILEGLGTEYNPFVT
        SWIYSSL    +G+I+  S+A +IW  L   YES S A +M L SQLQ+I+K  + +++YL+++K V D+F+ IGEPLSYRD L  ILEGL  EY+ FVT
Subjt:  SWIYSSLNEDKIGEIIGCSSAYEIWEHLRVVYESSSTARIMGLRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSYRDHLGYILEGLGTEYNPFVT

Query:  SIQNRNDRPSLADVRSLLLAYEARLEKQTSVDSLNVVQANLANFSMSSNQKRFQKNQPNTRSANPRPSSPFPFPQPFPTPLPGPSVLGRPQSSPRPQRWP
        SI NR+DRPSL +V SLL  YE RL +++   +LN  QAN                                                         R P
Subjt:  SIQNRNDRPSLADVRSLLLAYEARLEKQTSVDSLNVVQANLANFSMSSNQKRFQKNQPNTRSANPRPSSPFPFPQPFPTPLPGPSVLGRPQSSPRPQRWP

Query:  ISNPNRPQCQICGKLGHIALVCYNRHNPMYQAPLNSSAS
          N + PQCQICGK GHIAL  Y+R N  Y  P+  +A+
Subjt:  ISNPNRPQCQICGKLGHIALVCYNRHNPMYQAPLNSSAS

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]1.1e-8551.71Show/hide
Query:  QYLPAQTSFLPVFQNFNPFYPSVHPSPSPFPTLTPPLNIKLTDSNYLLWKNQLLNHIIAFDMENFINGT-PPPPKFLDMAQSQVNPQFTFWQKLNRTLMS
        Q+ P   +FL   Q  NPF      S +PFPTL  PLN+KL D+N+LLWKNQLLN +IA  +  +++GT  PPP+FLD  Q Q NP +  W++ NR LM 
Subjt:  QYLPAQTSFLPVFQNFNPFYPSVHPSPSPFPTLTPPLNIKLTDSNYLLWKNQLLNHIIAFDMENFINGT-PPPPKFLDMAQSQVNPQFTFWQKLNRTLMS

Query:  WIYSSLNEDKIGEIIGCSSAYEIWEHLRVVYESSSTARIMGLRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSYRDHLGYILEGLGTEYNPFVTS
        WIYSSL+E+K+GE++   + ++IW  L  VY+S +TARIMGL+++LQ +RKDG SV+QYLA+IK++ADKF+A+GEPLSYRDHL ++L+GLG+EYN FVTS
Subjt:  WIYSSLNEDKIGEIIGCSSAYEIWEHLRVVYESSSTARIMGLRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSYRDHLGYILEGLGTEYNPFVTS

Query:  IQNRNDRPSLADVRSLLLAYEARLEKQTSVDSLNVVQANLANFSMSSNQKRFQKNQPNTRSANPRPSSPFP------FPQPFPTPLPGPSVLGRPQSSPR
        I NR D PSL DVRSLLLAYEARL+KQ +VD LN+ QANL N S+  N KR            P P   FP      FP    +     S+LG+PQS   
Subjt:  IQNRNDRPSLADVRSLLLAYEARLEKQTSVDSLNVVQANLANFSMSSNQKRFQKNQPNTRSANPRPSSPFP------FPQPFPTPLPGPSVLGRPQSSPR

Query:  PQRWPIS-NPNRPQCQICGKLGHIALVCYNRHNPMYQAPLNSSASPSSSF
          +WP   + ++ QCQICGKLGH A VCY+R N  Y      +ASP + +
Subjt:  PQRWPIS-NPNRPQCQICGKLGHIALVCYNRHNPMYQAPLNSSASPSSSF

TrEMBL top hitse value%identityAlignment
A0A2P5BGF8 Uncharacterized protein1.5e-5144.73Show/hide
Query:  PSVHPSPSPFPTLTPPLNIKLTDSNYLLWKNQLLNHIIAFDMENFINGTPP-PPKFLDMAQSQVNPQFTFWQKLNRTLMSWIYSSLNEDKIGEIIGCSSA
        P + P P   P++  P  IKL   NYL+WKNQLLN IIA  +E+FI+G+ P PP+F D A+  VN ++  WQ+ NR +MSWIY+SL +  +G+I+G +SA
Subjt:  PSVHPSPSPFPTLTPPLNIKLTDSNYLLWKNQLLNHIIAFDMENFINGTPP-PPKFLDMAQSQVNPQFTFWQKLNRTLMSWIYSSLNEDKIGEIIGCSSA

Query:  YEIWEHLRVVYESSSTARIMGLRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRNDRPSLADVRSLLLAY
        +EIWE L  +Y SSS A+I  LR++LQ +RKDGL+  +Y+ + K++ +  +A+GEP+S +DHL Y+  GL  EYN FVTSI  R D   L ++ SLLL+Y
Subjt:  YEIWEHLRVVYESSSTARIMGLRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRNDRPSLADVRSLLLAY

Query:  EARLEKQTSVDSLNVVQANLANFSMSSNQKRFQKNQPN-----TRSANPRPSSPFPFPQPFPTPLPGPSVLGRPQ
        E RLE Q +   L+ +QANLA+ ++  N+K ++ N  N     T++   R +  F    P       PS+LG+PQ
Subjt:  EARLEKQTSVDSLNVVQANLANFSMSSNQKRFQKNQPN-----TRSANPRPSSPFPFPQPFPTPLPGPSVLGRPQ

A0A438GC62 Retrovirus-related Pol polyprotein from transposon RE16.4e-5541.59Show/hide
Query:  FQYLPAQTSFLPVFQNFNPFYPSVHPSPSPFPTLTPPLNIKLTDSNYLLWKNQLLNHIIAFDMENFIN-GTPPPPKFLDMAQSQVNPQFTFWQKLNRTLM
        F   PA  S      N NP  P +     P P+L+  L+IKL ++N LL K+QLLN IIA  +E+FI+     PPK+LD A  QVNP+F  W +LN+ +M
Subjt:  FQYLPAQTSFLPVFQNFNPFYPSVHPSPSPFPTLTPPLNIKLTDSNYLLWKNQLLNHIIAFDMENFIN-GTPPPPKFLDMAQSQVNPQFTFWQKLNRTLM

Query:  SWIYSSLNEDKIGEIIGCSSAYEIWEHLRVVYESSSTARIMGLRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSYRDHLGYILEGLGTEYNPFVT
        SWIYSSL    +G+I+  S+A +IW  L   YES S A +M L SQLQ+I+K  + +++YL+++K V D+F+ IGEPLSYRD L  ILEGL  EY+ FVT
Subjt:  SWIYSSLNEDKIGEIIGCSSAYEIWEHLRVVYESSSTARIMGLRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSYRDHLGYILEGLGTEYNPFVT

Query:  SIQNRNDRPSLADVRSLLLAYEARLEKQTSVDSLNVVQANLANFSMSSNQKRFQKNQPNTRSANPRPSSPFPFPQPFPTPLPGPSVLGRPQSSPRPQRWP
        SI NR+DRPSL +V SLL  YE RL +++   +LN  QAN                                                         R P
Subjt:  SIQNRNDRPSLADVRSLLLAYEARLEKQTSVDSLNVVQANLANFSMSSNQKRFQKNQPNTRSANPRPSSPFPFPQPFPTPLPGPSVLGRPQSSPRPQRWP

Query:  ISNPNRPQCQICGKLGHIALVCYNRHNPMYQAPLNSSAS
          N + PQCQICGK GHIAL  Y+R N  Y  P+  +A+
Subjt:  ISNPNRPQCQICGKLGHIALVCYNRHNPMYQAPLNSSAS

A0A6J1DQX7 uncharacterized protein LOC1110223155.3e-8651.71Show/hide
Query:  QYLPAQTSFLPVFQNFNPFYPSVHPSPSPFPTLTPPLNIKLTDSNYLLWKNQLLNHIIAFDMENFINGT-PPPPKFLDMAQSQVNPQFTFWQKLNRTLMS
        Q+ P   +FL   Q  NPF      S +PFPTL  PLN+KL D+N+LLWKNQLLN +IA  +  +++GT  PPP+FLD  Q Q NP +  W++ NR LM 
Subjt:  QYLPAQTSFLPVFQNFNPFYPSVHPSPSPFPTLTPPLNIKLTDSNYLLWKNQLLNHIIAFDMENFINGT-PPPPKFLDMAQSQVNPQFTFWQKLNRTLMS

Query:  WIYSSLNEDKIGEIIGCSSAYEIWEHLRVVYESSSTARIMGLRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSYRDHLGYILEGLGTEYNPFVTS
        WIYSSL+E+K+GE++   + ++IW  L  VY+S +TARIMGL+++LQ +RKDG SV+QYLA+IK++ADKF+A+GEPLSYRDHL ++L+GLG+EYN FVTS
Subjt:  WIYSSLNEDKIGEIIGCSSAYEIWEHLRVVYESSSTARIMGLRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSYRDHLGYILEGLGTEYNPFVTS

Query:  IQNRNDRPSLADVRSLLLAYEARLEKQTSVDSLNVVQANLANFSMSSNQKRFQKNQPNTRSANPRPSSPFP------FPQPFPTPLPGPSVLGRPQSSPR
        I NR D PSL DVRSLLLAYEARL+KQ +VD LN+ QANL N S+  N KR            P P   FP      FP    +     S+LG+PQS   
Subjt:  IQNRNDRPSLADVRSLLLAYEARLEKQTSVDSLNVVQANLANFSMSSNQKRFQKNQPNTRSANPRPSSPFP------FPQPFPTPLPGPSVLGRPQSSPR

Query:  PQRWPIS-NPNRPQCQICGKLGHIALVCYNRHNPMYQAPLNSSASPSSSF
          +WP   + ++ QCQICGKLGH A VCY+R N  Y      +ASP + +
Subjt:  PQRWPIS-NPNRPQCQICGKLGHIALVCYNRHNPMYQAPLNSSASPSSSF

A0A7J0EGI5 Uncharacterized protein2.3e-5243.13Show/hide
Query:  STATPTRPLNPNVPPFPQFQNPNPSVPAGFQYLPAQTSFLPVFQNFNPFYPSVHPSPSPFPTLTPPLNIKLTDSNYLLWKNQLLNHIIAFDMENFINGTP
        S +TP  P  P   P P    PNP                      NP   +  P P+  P++  PL +KL D NY++WK QLLN +IA  +E F++G+ 
Subjt:  STATPTRPLNPNVPPFPQFQNPNPSVPAGFQYLPAQTSFLPVFQNFNPFYPSVHPSPSPFPTLTPPLNIKLTDSNYLLWKNQLLNHIIAFDMENFINGTP

Query:  P-PPKFLDMAQSQVNPQFTFWQKLNRTLMSWIYSSLNEDKIGEIIGCSSAYEIWEHLRVVYESSSTARIMGLRSQLQKIRKDGLSVAQYLAQIKDVADKF
          PP+FLD  Q Q NP+F  WQ+ NR +MSWIY+S+NE  +G+I+G +SA +IWE L  +Y ++S A +  LR+ LQ I+K+GL+   Y+ + + + +  
Subjt:  P-PPKFLDMAQSQVNPQFTFWQKLNRTLMSWIYSSLNEDKIGEIIGCSSAYEIWEHLRVVYESSSTARIMGLRSQLQKIRKDGLSVAQYLAQIKDVADKF

Query:  SAIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRNDRPSLADVRSLLLAYEARLEKQTSVDS
        ++IGEP++Y DHL Y L GLG +YNPFVTSIQ++  RPS+ +V SLLL+Y+ARLE+Q++ D+
Subjt:  SAIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRNDRPSLADVRSLLLAYEARLEKQTSVDS

A0A7J0GPN0 UBX domain-containing protein6.2e-5036.75Show/hide
Query:  NPFYPSVHPSPSP----------FPTLTPPLNIKLTDSNYLLWKNQLLNHIIAFDMENFINGTPP-PPKFLDMAQSQVNPQFTFWQKLNRTLMSWIYSSL
        NP   S  P P+P           P++  PL +KL D NY++WK QLLN +IA  +E F++G+   PP+FLD  Q Q NP+F  WQ+ NR +MSWIY+S+
Subjt:  NPFYPSVHPSPSP----------FPTLTPPLNIKLTDSNYLLWKNQLLNHIIAFDMENFINGTPP-PPKFLDMAQSQVNPQFTFWQKLNRTLMSWIYSSL

Query:  NEDKIGEIIGCSSAYEIWEHLRVVYESSSTARIMGLRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRND
        NE  +G+I+G +SA +IWE L  +Y ++S A +  LR+ LQ I+K+GL+   Y+ + + + +  ++IGEP++Y DHL Y L GLG +YNPFVTSIQ++  
Subjt:  NEDKIGEIIGCSSAYEIWEHLRVVYESSSTARIMGLRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRND

Query:  RPSLADVRSLLLAYEARLEKQTSVDSLNVVQANLANFSMSSNQKRFQKNQPNTRSANPRPSSPFPFPQPFPTPLPGPSVLGRPQSSPRPQRWPISNPNRP
        RPS+ +  S            TS+      +    N   +SN     + Q    S +P PSSP P                                 RP
Subjt:  RPSLADVRSLLLAYEARLEKQTSVDSLNVVQANLANFSMSSNQKRFQKNQPNTRSANPRPSSPFPFPQPFPTPLPGPSVLGRPQSSPRPQRWPISNPNRP

Query:  QCQICGKLGHIALVCYNRHNPMYQAP------LNSSASPSSSFQPAISTKS
        +CQIC K GH A  CY+  N  YQ P       N+  +P+    P++ST S
Subjt:  QCQICGKLGHIALVCYNRHNPMYQAP------LNSSASPSSSFQPAISTKS

SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.2e-2124.04Show/hide
Query:  KLTDSNYLLWKNQLLNHIIAFDMENFING--TPPPPKFLDMAQSQVNPQFTFWQKLNRTLMSWIYSSLNEDKIGEIIGCSSAYEIWEHLRVVYESSSTAR
        KLT +NYL+W  Q+      +++  F++G  T PP      A  +VNP +T W++ ++ + S +  +++      +   ++A +IWE LR +Y + S   
Subjt:  KLTDSNYLLWKNQLLNHIIAFDMENFING--TPPPPKFLDMAQSQVNPQFTFWQKLNRTLMSWIYSSLNEDKIGEIIGCSSAYEIWEHLRVVYESSSTAR

Query:  IMGLRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRNDRPSLADVRSLLLAYEARLEKQTSVDSLNVVQA
        +  LR+QL++  K   ++  Y+  +    D+ + +G+P+ + + +  +LE L  EY P +  I  ++  P+L ++   LL +E+++   +S   + +   
Subjt:  IMGLRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRNDRPSLADVRSLLLAYEARLEKQTSVDSLNVVQA

Query:  NLA--NFSMSSNQKRFQKNQPNTRSANPRPSSPFPFPQPFPTPLPGPSVLGRPQSSPRPQRWPISNPNRP---QCQICGKLGHIALVCYNRHNPMYQAPL
         ++  N + ++N     +N       N   S P+                   QSS      P +N ++P   +CQICG  GH A  C    + +     
Subjt:  NLA--NFSMSSNQKRFQKNQPNTRSANPRPSSPFPFPQPFPTPLPGPSVLGRPQSSPRPQRWPISNPNRP---QCQICGKLGHIALVCYNRHNPMYQAPL

Query:  NSSASPSSSFQP
            SP + +QP
Subjt:  NSSASPSSSFQP

Arabidopsis top hitse value%identityAlignment
AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).6.2e-1025.62Show/hide
Query:  SFLPVFQNFNPFY--PSVHPSPSPFPTLTPPLNIKLTDSNYLLWKNQLLNHIIAFDMENFINGTPPPPKFLDMAQSQVNPQFTFWQKLNRTLMSWIYSSL
        S  P     +P+Y  P +H  PS F        +   + NY+ WK +  + +       FI+GT P P          +P +  W++ N  +M W+ +S+
Subjt:  SFLPVFQNFNPFY--PSVHPSPSPFPTLTPPLNIKLTDSNYLLWKNQLLNHIIAFDMENFINGTPPPPKFLDMAQSQVNPQFTFWQKLNRTLMSWIYSSL

Query:  NEDKIGEIIGCSSAYEIWEHLRVVYESSSTARIMGLRSQLQKIRKDGLSVAQYLAQIKDV
         +  +  ++   +A+++WE LR V+      +I  LR +L  +R+ G SV +Y  ++  V
Subjt:  NEDKIGEIIGCSSAYEIWEHLRVVYESSSTARIMGLRSQLQKIRKDGLSVAQYLAQIKDV

AT1G34070.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)3.4e-1625.65Show/hide
Query:  PLNIKLTDSNYLLWKNQLLNHIIAFDMENFINGTPPPPKFLDMAQSQVNPQFTFWQKLNRTLMSWIYSSLNEDKI-GEIIGCSSAYEIWEHLRVVYESSS
        P+ + + +SNY  W+   L H ++FD+   I+GT  P           N     WQK +  +   +Y +L   +  G  +  S++ +IW  ++  + ++ 
Subjt:  PLNIKLTDSNYLLWKNQLLNHIIAFDMENFINGTPPPPKFLDMAQSQVNPQFTFWQKLNRTLMSWIYSSLNEDKI-GEIIGCSSAYEIWEHLRVVYESSS

Query:  TARIMGLRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRNDRPSLADVRSLLLAYEARLEK
         AR + L S+L+      + VA Y  ++K +AD    +  P++ R+ + Y+L GL  +++  +  I++R   PS  D  ++L   E RL++
Subjt:  TARIMGLRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRNDRPSLADVRSLLLAYEARLEK

AT5G48050.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)5.8e-1623.25Show/hide
Query:  LNIKLTDSNYLLWKNQLLNHIIAFDMENFINGTPPPPKFLDMAQSQVNPQFTFWQKLNRTLMSWIYSSLNEDKIGEII--GCSSAYEIWEHLRVVYESSS
        + + L   NY +W+       ++F +   I+G+  P    +            W++ +  +  WIY ++ +  +  II  GC +A ++W  L  ++  + 
Subjt:  LNIKLTDSNYLLWKNQLLNHIIAFDMENFINGTPPPPKFLDMAQSQVNPQFTFWQKLNRTLMSWIYSSLNEDKIGEII--GCSSAYEIWEHLRVVYESSS

Query:  TARIMGLRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRNDRPSLADVRSLLLAYEARLEKQTSVDSLNV
         AR +   ++L+    D LSV +Y  ++K ++D  + +  P+S R  + ++L GL  +Y+  +  I++++  PS  + RS+LL  E+RL  ++     + 
Subjt:  TARIMGLRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRNDRPSLADVRSLLLAYEARLEKQTSVDSLNV

Query:  VQANLAN--FSMSSNQKRFQKNQPNTRS
           +L+N  F++   Q+R+ +   N  S
Subjt:  VQANLAN--FSMSSNQKRFQKNQPNTRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCTTCTTCAAGCTCTTCCACAGCAGCTGATGATCGTCTACCTCCTTTTCCTATTACCTCCACTGTCTCTAGCCCTATTCCAGTGACCACGTTATCTTCCCCCCT
TCCTACACCTGTTACTTCACATCGTCTTCCACTGAATACCTCGACAGCTACACCTACTAGGCCCCTCAACCCTAATGTTCCTCCCTTTCCTCAATTCCAAAACCCTAATC
CCTCTGTTCCAGCAGGCTTTCAGTATCTACCAGCTCAAACATCATTTCTGCCGGTTTTTCAAAATTTCAACCCCTTTTATCCTTCTGTTCATCCATCTCCTTCTCCTTTT
CCTACCTTAACCCCACCCCTCAACATCAAACTTACAGACTCAAATTACCTTCTGTGGAAAAATCAACTGTTGAACCACATAATAGCCTTCGATATGGAAAATTTTATCAA
CGGCACTCCACCTCCTCCCAAATTTCTGGATATGGCTCAAAGTCAGGTAAACCCCCAATTTACTTTCTGGCAAAAGCTCAATCGCACTCTGATGAGCTGGATATATTCCT
CCCTTAATGAAGATAAAATAGGAGAGATAATCGGTTGCTCCTCTGCGTATGAGATATGGGAGCATCTTCGTGTGGTCTATGAATCATCCTCCACAGCTCGGATTATGGGA
CTTCGATCTCAGCTTCAAAAGATTCGCAAAGATGGCCTTTCTGTAGCTCAGTACCTAGCTCAAATCAAGGATGTCGCGGATAAATTCTCAGCCATTGGAGAACCCCTGTC
CTACCGTGATCACCTGGGGTACATTCTTGAGGGGCTTGGCACAGAGTACAATCCATTTGTAACCTCTATTCAGAATCGCAATGACCGCCCGTCGCTTGCCGACGTCCGTA
GCCTCCTCTTAGCCTATGAAGCTCGCCTTGAGAAGCAAACCTCTGTTGATAGCCTCAATGTTGTTCAAGCCAACCTTGCCAACTTCTCGATGTCTTCCAATCAGAAACGT
TTTCAGAAAAACCAACCTAATACAAGGTCAGCTAATCCTCGTCCCTCATCACCCTTTCCCTTTCCCCAACCATTTCCAACTCCTCTTCCTGGTCCTAGTGTTCTTGGTAG
ACCACAATCTTCCCCTCGTCCTCAACGATGGCCTATCTCCAACCCCAATCGCCCTCAATGCCAAATATGTGGCAAGCTCGGTCACATTGCCTTAGTTTGTTATAACCGCC
ATAACCCAATGTATCAAGCACCCTTGAATTCTTCTGCCTCACCCTCAAGCTCTTTTCAACCAGCTATCTCAACCAAGTCAGTCGTCCTCTCCCTCTTCCGCTGCCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCTTCTTCAAGCTCTTCCACAGCAGCTGATGATCGTCTACCTCCTTTTCCTATTACCTCCACTGTCTCTAGCCCTATTCCAGTGACCACGTTATCTTCCCCCCT
TCCTACACCTGTTACTTCACATCGTCTTCCACTGAATACCTCGACAGCTACACCTACTAGGCCCCTCAACCCTAATGTTCCTCCCTTTCCTCAATTCCAAAACCCTAATC
CCTCTGTTCCAGCAGGCTTTCAGTATCTACCAGCTCAAACATCATTTCTGCCGGTTTTTCAAAATTTCAACCCCTTTTATCCTTCTGTTCATCCATCTCCTTCTCCTTTT
CCTACCTTAACCCCACCCCTCAACATCAAACTTACAGACTCAAATTACCTTCTGTGGAAAAATCAACTGTTGAACCACATAATAGCCTTCGATATGGAAAATTTTATCAA
CGGCACTCCACCTCCTCCCAAATTTCTGGATATGGCTCAAAGTCAGGTAAACCCCCAATTTACTTTCTGGCAAAAGCTCAATCGCACTCTGATGAGCTGGATATATTCCT
CCCTTAATGAAGATAAAATAGGAGAGATAATCGGTTGCTCCTCTGCGTATGAGATATGGGAGCATCTTCGTGTGGTCTATGAATCATCCTCCACAGCTCGGATTATGGGA
CTTCGATCTCAGCTTCAAAAGATTCGCAAAGATGGCCTTTCTGTAGCTCAGTACCTAGCTCAAATCAAGGATGTCGCGGATAAATTCTCAGCCATTGGAGAACCCCTGTC
CTACCGTGATCACCTGGGGTACATTCTTGAGGGGCTTGGCACAGAGTACAATCCATTTGTAACCTCTATTCAGAATCGCAATGACCGCCCGTCGCTTGCCGACGTCCGTA
GCCTCCTCTTAGCCTATGAAGCTCGCCTTGAGAAGCAAACCTCTGTTGATAGCCTCAATGTTGTTCAAGCCAACCTTGCCAACTTCTCGATGTCTTCCAATCAGAAACGT
TTTCAGAAAAACCAACCTAATACAAGGTCAGCTAATCCTCGTCCCTCATCACCCTTTCCCTTTCCCCAACCATTTCCAACTCCTCTTCCTGGTCCTAGTGTTCTTGGTAG
ACCACAATCTTCCCCTCGTCCTCAACGATGGCCTATCTCCAACCCCAATCGCCCTCAATGCCAAATATGTGGCAAGCTCGGTCACATTGCCTTAGTTTGTTATAACCGCC
ATAACCCAATGTATCAAGCACCCTTGAATTCTTCTGCCTCACCCTCAAGCTCTTTTCAACCAGCTATCTCAACCAAGTCAGTCGTCCTCTCCCTCTTCCGCTGCCATTAA
Protein sequenceShow/hide protein sequence
MASSSSSSTAADDRLPPFPITSTVSSPIPVTTLSSPLPTPVTSHRLPLNTSTATPTRPLNPNVPPFPQFQNPNPSVPAGFQYLPAQTSFLPVFQNFNPFYPSVHPSPSPF
PTLTPPLNIKLTDSNYLLWKNQLLNHIIAFDMENFINGTPPPPKFLDMAQSQVNPQFTFWQKLNRTLMSWIYSSLNEDKIGEIIGCSSAYEIWEHLRVVYESSSTARIMG
LRSQLQKIRKDGLSVAQYLAQIKDVADKFSAIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRNDRPSLADVRSLLLAYEARLEKQTSVDSLNVVQANLANFSMSSNQKR
FQKNQPNTRSANPRPSSPFPFPQPFPTPLPGPSVLGRPQSSPRPQRWPISNPNRPQCQICGKLGHIALVCYNRHNPMYQAPLNSSASPSSSFQPAISTKSVVLSLFRCH