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Lag0013765 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0013765
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionlysine-specific demethylase JMJ25
Genome locationchr1:52550606..52550917
RNA-Seq ExpressionLag0013765
SyntenyLag0013765
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0032259 - methylation (biological process)
GO:0033169 - histone H3-K9 demethylation (biological process)
GO:0000118 - histone deacetylase complex (cellular component)
GO:0000785 - chromatin (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
GO:0031490 - chromatin DNA binding (molecular function)
GO:0032454 - histone demethylase activity (H3-K9 specific) (molecular function)
InterPro domainsIPR014977 - WRC domain
IPR045109 - Histone demethylase JHDM2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK13094.1 lysine-specific demethylase JMJ25 [Cucumis melo var. makuwa]2.3e-4294.79Show/hide
Query:  MEEDEEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSIETDSNVENVVIRA-PKAATLAKLMKRKKLAG
        MEE++EALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSI+TDSNVENVVIRA PKAATLAKLMKRKKL G
Subjt:  MEEDEEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSIETDSNVENVVIRA-PKAATLAKLMKRKKLAG

XP_004134736.1 lysine-specific demethylase JMJ25 [Cucumis sativus]2.3e-4294.79Show/hide
Query:  MEEDEEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSIETDSNVENVVIRA-PKAATLAKLMKRKKLAG
        MEE++EALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSI+TDSNVENVVIRA PKAATLAKLMKRKKL G
Subjt:  MEEDEEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSIETDSNVENVVIRA-PKAATLAKLMKRKKLAG

XP_008439919.1 PREDICTED: lysine-specific demethylase JMJ25 [Cucumis melo]2.3e-4294.79Show/hide
Query:  MEEDEEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSIETDSNVENVVIRA-PKAATLAKLMKRKKLAG
        MEE++EALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSI+TDSNVENVVIRA PKAATLAKLMKRKKL G
Subjt:  MEEDEEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSIETDSNVENVVIRA-PKAATLAKLMKRKKLAG

XP_022142226.1 lysine-specific demethylase JMJ25 isoform X1 [Momordica charantia]3.5e-4393.68Show/hide
Query:  MEEDEEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSIETDSNVENVVIRAPKAATLAKLMKRKKLAG
        MEE+EEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRT+R+SI+TDSN+ENVVIRAP+AATLAKLMKRKKLAG
Subjt:  MEEDEEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSIETDSNVENVVIRAPKAATLAKLMKRKKLAG

XP_022142227.1 lysine-specific demethylase JMJ25 isoform X2 [Momordica charantia]3.5e-4393.68Show/hide
Query:  MEEDEEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSIETDSNVENVVIRAPKAATLAKLMKRKKLAG
        MEE+EEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRT+R+SI+TDSN+ENVVIRAP+AATLAKLMKRKKLAG
Subjt:  MEEDEEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSIETDSNVENVVIRAPKAATLAKLMKRKKLAG

TrEMBL top hitse value%identityAlignment
A0A0A0KHI0 Uncharacterized protein1.1e-4294.79Show/hide
Query:  MEEDEEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSIETDSNVENVVIRA-PKAATLAKLMKRKKLAG
        MEE++EALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSI+TDSNVENVVIRA PKAATLAKLMKRKKL G
Subjt:  MEEDEEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSIETDSNVENVVIRA-PKAATLAKLMKRKKLAG

A0A5A7UGT3 Lysine-specific demethylase JMJ251.1e-4294.79Show/hide
Query:  MEEDEEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSIETDSNVENVVIRA-PKAATLAKLMKRKKLAG
        MEE++EALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSI+TDSNVENVVIRA PKAATLAKLMKRKKL G
Subjt:  MEEDEEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSIETDSNVENVVIRA-PKAATLAKLMKRKKLAG

A0A5D3CPY5 Lysine-specific demethylase JMJ251.1e-4294.79Show/hide
Query:  MEEDEEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSIETDSNVENVVIRA-PKAATLAKLMKRKKLAG
        MEE++EALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSI+TDSNVENVVIRA PKAATLAKLMKRKKL G
Subjt:  MEEDEEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSIETDSNVENVVIRA-PKAATLAKLMKRKKLAG

A0A6J1CLK8 lysine-specific demethylase JMJ25 isoform X11.7e-4393.68Show/hide
Query:  MEEDEEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSIETDSNVENVVIRAPKAATLAKLMKRKKLAG
        MEE+EEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRT+R+SI+TDSN+ENVVIRAP+AATLAKLMKRKKLAG
Subjt:  MEEDEEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSIETDSNVENVVIRAPKAATLAKLMKRKKLAG

A0A6J1CM61 lysine-specific demethylase JMJ25 isoform X21.7e-4393.68Show/hide
Query:  MEEDEEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSIETDSNVENVVIRAPKAATLAKLMKRKKLAG
        MEE+EEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRT+R+SI+TDSN+ENVVIRAP+AATLAKLMKRKKLAG
Subjt:  MEEDEEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSIETDSNVENVVIRAPKAATLAKLMKRKKLAG

SwissProt top hitse value%identityAlignment
O81001 Growth-regulating factor 13.0e-0552.5Show/hide
Query:  PDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCK
        P+  RC+RTDGK+WRC R  + + K CE H  +GRHR  K
Subjt:  PDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCK

Q6AWY1 Growth-regulating factor 86.8e-0555.56Show/hide
Query:  RCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCK
        RC+RTDGK+WRC R  + + K CE H  +GRHR  K
Subjt:  RCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCK

Q6AWY3 Growth-regulating factor 64.0e-0552.5Show/hide
Query:  PDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCK
        P+  RC+RTDGK+WRC R  + + K CE H  +GRHR  K
Subjt:  PDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCK

Q8L8A8 Growth-regulating factor 21.0e-0537.33Show/hide
Query:  PDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSIETDSNVENVVIRAPKAAT
        P+  RC+RTDGK+WRC R  + + K CE H  +GRHR               +RK +E  S        A KA T
Subjt:  PDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSIETDSNVENVVIRAPKAAT

Q9FJB8 Growth-regulating factor 76.8e-0552.5Show/hide
Query:  RCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVP
        RC+RTDGK+WRC + V+ N K CE H  +GR R  K   P
Subjt:  RCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVP

Arabidopsis top hitse value%identityAlignment
AT1G09060.1 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase2.6e-0738.57Show/hide
Query:  EDEEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSIETDSNVE
        E    +PD LRCKR+DGKQWRC    M +  +CE HY+Q + R        + K  +      ETD+  E
Subjt:  EDEEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSIETDSNVE

AT1G09060.2 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase2.6e-0738.57Show/hide
Query:  EDEEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSIETDSNVE
        E    +PD LRCKR+DGKQWRC    M +  +CE HY+Q + R        + K  +      ETD+  E
Subjt:  EDEEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSIETDSNVE

AT1G09060.3 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase2.6e-0738.57Show/hide
Query:  EDEEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSIETDSNVE
        E    +PD LRCKR+DGKQWRC    M +  +CE HY+Q + R        + K  +      ETD+  E
Subjt:  EDEEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSIETDSNVE

AT4G21430.1 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase7.7e-1249.15Show/hide
Query:  DEEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNR
        + E +PD  RC R+DGKQWRCKRR ++  K+CE H+ Q   ++ K+KV +S KL R+ R
Subjt:  DEEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNR

AT4G37740.1 growth-regulating factor 27.4e-0737.33Show/hide
Query:  PDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSIETDSNVENVVIRAPKAAT
        P+  RC+RTDGK+WRC R  + + K CE H  +GRHR               +RK +E  S        A KA T
Subjt:  PDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSIETDSNVENVVIRAPKAAT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAGATGAAGAAGCACTTCCGGACCATTTGCGGTGCAAGAGGACTGACGGGAAGCAATGGCGTTGCAAACGGAGAGTCATGGACAATCTCAAGCTCTGTGAAAT
TCACTATCTTCAAGGCCGCCATCGCCAGTGCAAGGAGAAAGTTCCGGATTCTCTCAAACTTCAAAGGACGAACAGGAAATCGATTGAAACGGATTCGAATGTTGAAAATG
TCGTAATTAGGGCCCCGAAAGCGGCAACACTGGCAAAACTGATGAAGAGGAAGAAATTGGCGGGGCTACAGCGGCATTGGATGGGATGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAAGATGAAGAAGCACTTCCGGACCATTTGCGGTGCAAGAGGACTGACGGGAAGCAATGGCGTTGCAAACGGAGAGTCATGGACAATCTCAAGCTCTGTGAAAT
TCACTATCTTCAAGGCCGCCATCGCCAGTGCAAGGAGAAAGTTCCGGATTCTCTCAAACTTCAAAGGACGAACAGGAAATCGATTGAAACGGATTCGAATGTTGAAAATG
TCGTAATTAGGGCCCCGAAAGCGGCAACACTGGCAAAACTGATGAAGAGGAAGAAATTGGCGGGGCTACAGCGGCATTGGATGGGATGTTAA
Protein sequenceShow/hide protein sequence
MEEDEEALPDHLRCKRTDGKQWRCKRRVMDNLKLCEIHYLQGRHRQCKEKVPDSLKLQRTNRKSIETDSNVENVVIRAPKAATLAKLMKRKKLAGLQRHWMGC