CuGenDBv2

Gene ID	Lag0013783
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	ribosomal RNA-processing protein 17-like
Genome location	chr1:52693073..52695433
RNA-Seq Expression	Lag0013783
Synteny	Lag0013783
Gene Ontology terms	GO:0005730 - nucleolus (cellular component)
InterPro domains	IPR019186 - Nucleolar protein 12

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7026594.1 hypothetical protein SDJN02_10596, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.8e-75

84.85

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Query:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND
        MV+NE EEGG L QP ARHIKK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIE+RKKRK+EK+LVL+GGVLPADRPVDEQND
Subjt:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND

Query:  DQE--DEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSRSKPRSKRDKKKGRKKK
        D +  DED EE PLAPISE TTYD+GNIKVTVTTSEV R+EEIDPIDK Q +T+QL AKDKKH+LP+TKKKPFKKVAR+KSRSK RSK DKKKGRKKK
Subjt:  DQE--DEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSRSKPRSKRDKKKGRKKK

XP_022142095.1 ribosomal RNA-processing protein 17-like [Momordica charantia]

1.6e-76

86.73

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Query:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND
        MV+N+G+EGG+LAQPR RHIKKRALKNKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIE RKKRK EK+LVLYGG+LPADRPVDEQND
Subjt:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND

Query:  DQEDEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSRSKPRSKRDKKKGRKKK
        D E+E  EE P APISE TTYD+GNIKVTV TSEVSR+ EI PIDK+QTATTQL AKDKKHNLPITKKKPFKKVA+QKSR KPRSKRDKKKGRKKK
Subjt:  DQEDEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSRSKPRSKRDKKKGRKKK

XP_022926799.1 ribosomal RNA-processing protein 17 [Cucurbita moschata]

2.3e-75

85.35

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Query:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND
        MV+NE EEGG L QP ARHIKK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIE+RKKRK+EKDLVL+GGVLPADRPVDEQND
Subjt:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND

Query:  DQE--DEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSRSKPRSKRDKKKGRKKK
        D +  DED EE PLAPISE T YD+GNIKVTVTTSEV R+EEIDPIDK Q +T+QL AKDKKH+LPITKKKPFKKVAR+KSRSK RSK DKKKGRKKK
Subjt:  DQE--DEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSRSKPRSKRDKKKGRKKK

XP_023517913.1 ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo]

1.8e-75

84.85

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Query:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND
        MV+NE EEGG L QP ARHIKK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIE+RKKRK+EK+LVL+GGVLPADRPVDEQND
Subjt:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND

Query:  DQE--DEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSRSKPRSKRDKKKGRKKK
        D +  DED EE PLAPISE TTYD+GNIKVTVTTSEV R+EEIDPIDK Q +T+QL AKDKKH+LP+TKKKPFKKVAR+KSRSK RSK DKKKGRKKK
Subjt:  DQE--DEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSRSKPRSKRDKKKGRKKK

XP_038881021.1 nucleolar protein 12 [Benincasa hispida]

6.0e-76

84.85

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Query:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND
        MV N+GEEG +LAQP ARHIKKRAL+NKALSVSFNEKDLRD+VTGFHKRKKKRRKEA+KQQEEA RRKRIE RKKR+LEKDLVLYGGVLPADRPVDE+ND
Subjt:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND

Query:  DQE--DEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSRSKPRSKRDKKKGRKKK
        D E  +ED EE PLAP SE TTYD+GNIKVTV TSEVSREEEIDPIDK QTATTQLFAKDKKHNLP+TKKKPFKKVA+Q+SR K RSKRDK+KG+KKK
Subjt:  DQE--DEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSRSKPRSKRDKKKGRKKK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KYB4 Uncharacterized protein

4.4e-72

83.33

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Query:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND
        MV+N+GEEGG+LAQP ARHIKKRAL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRKLEKDLVL+GGVLPADR VD+QND
Subjt:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND

Query:  DQEDEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTA--TTQLFAKDKKHNLPITKKKPFKKVARQKSRSKPRSKRDKKKGRKKK
        DQ +E  EE PLAP+SE TTYDNGN+KVTVTTSEVSRE+EIDPIDK QTA  T QL  KDKKHNLPITKKK FKKVA+Q+ R K RSKRDKKKGRKKK
Subjt:  DQEDEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTA--TTQLFAKDKKHNLPITKKKPFKKVARQKSRSKPRSKRDKKKGRKKK

A0A1S3C1A3 ribosomal RNA-processing protein 17

2.7e-74

85.71

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Query:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND
        MV+N+GEEGG+LAQP ARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRKLEKDLVLYGGVLPADR VD+QND
Subjt:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND

Query:  DQEDEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSRSKPRSKRDKKKGRKKK
        DQEDE  EE PLAP SE  TYDNGN+KVTVTTSEVSRE EIDPIDK QTA  QL  KDKKHNLPITKKK FKKVA+Q+SR K RSKRDKKKGRKKK
Subjt:  DQEDEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSRSKPRSKRDKKKGRKKK

A0A6J1CL67 ribosomal RNA-processing protein 17-like

7.7e-77

86.73

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Query:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND
        MV+N+G+EGG+LAQPR RHIKKRALKNKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIE RKKRK EK+LVLYGG+LPADRPVDEQND
Subjt:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND

Query:  DQEDEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSRSKPRSKRDKKKGRKKK
        D E+E  EE P APISE TTYD+GNIKVTV TSEVSR+ EI PIDK+QTATTQL AKDKKHNLPITKKKPFKKVA+QKSR KPRSKRDKKKGRKKK
Subjt:  DQEDEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSRSKPRSKRDKKKGRKKK

A0A6J1EG67 ribosomal RNA-processing protein 17

1.1e-75

85.35

Show/hide

Query:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND
        MV+NE EEGG L QP ARHIKK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIE+RKKRK+EKDLVL+GGVLPADRPVDEQND
Subjt:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND

Query:  DQE--DEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSRSKPRSKRDKKKGRKKK
        D +  DED EE PLAPISE T YD+GNIKVTVTTSEV R+EEIDPIDK Q +T+QL AKDKKH+LPITKKKPFKKVAR+KSRSK RSK DKKKGRKKK
Subjt:  DQE--DEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSRSKPRSKRDKKKGRKKK

A0A6J1KRQ7 ribosomal RNA-processing protein 17

2.5e-75

84.85

Show/hide

Query:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND
        MV+NE  EGG L QP +RH+KK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIE+RKKRK+EKDLVL+GGVLPADRPVDEQND
Subjt:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND

Query:  DQE--DEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSRSKPRSKRDKKKGRKKK
        D +  DED EE PLAPISE TTYD+GNIKVTVTTSEV REEEIDPIDK Q +T+QL AKDKKH+LPITKKKPFKKVAR+KSRSK RSK DKKKGRKKK
Subjt:  DQE--DEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSRSKPRSKRDKKKGRKKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G11240.1 CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink).

1.2e-34

56.61

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Query:  EEGGQLAQP-RARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQNDDQEDE
        EE G LA P  ARHI KRA KNK+L+VSF+EKDL+D+VTGFHKRKKKRRKEA+KQQEEA RRKRIE RK RKLE+ +V   G    D    E  D+ + E
Subjt:  EEGGQLAQP-RARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQNDDQEDE

Query:  DGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDK---KHNLPITKKKPFKKVARQKSRSKPRSKRDKKK
        D E  P A  S  T YD G +KVTVTTSE+SREEE +PI K +T +T+  +  K   K  +P+ K KP K+ +R++S +K   KRDKKK
Subjt:  DGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDK---KHNLPITKKKPFKKVARQKSRSKPRSKRDKKK

Sequences

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CDS sequence

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ATGGTCGAGAACGAAGGAGAGGAAGGGGGTCAACTCGCACAACCTCGTGCTCGACACATAAAGAAGAGAGCTCTCAAGAACAAAGCTCTTTCAGTCTCTTTCAATGAGAA
GGATTTGAGGGACTATGTCACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCAGAGAAGCAACAAGAGGAAGCTAAGCGGCGTAAGCGCATCGAAGATCGCA
AAAAGAGAAAATTAGAAAAAGATCTGGTGCTATATGGTGGTGTTCTACCAGCTGATCGGCCTGTTGATGAGCAGAATGATGACCAGGAGGACGAGGATGGGGAAGAGAAT
CCATTGGCACCAATTTCTGAGATGACGACGTATGACAATGGAAATATCAAAGTCACTGTGACAACAAGTGAAGTATCTCGTGAAGAAGAAATCGATCCCATTGACAAGAC
ACAGACAGCAACAACCCAATTGTTTGCAAAGGATAAGAAGCATAACTTGCCAATTACCAAAAAGAAGCCATTCAAGAAGGTTGCAAGACAGAAGTCAAGGTCAAAGCCGC
GGAGTAAAAGAGACAAAAAGAAAGGAAGGAAAAAGAAATAG

mRNA sequence

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Protein sequence

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MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQNDDQEDEDGEEN
PLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSRSKPRSKRDKKKGRKKK

Lag0013783 (gene) of Sponge gourd (AG-4) v1 genome