; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0013892 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0013892
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description50S Ribosomal protein
Genome locationchr1:53551024..53552042
RNA-Seq ExpressionLag0013892
SyntenyLag0013892
Gene Ontology termsGO:0005525 - GTP binding (molecular function)
InterPro domainsIPR011719 - Conserved hypothetical protein CHP02058
IPR037103 - Tubulin/FtsZ-like, C-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142213.1 uncharacterized protein LOC111012382 isoform X1 [Momordica charantia]1.3e-6283.55Show/hide
Query:  MRGSIVLNLPFPWATDLRFRSYLLSN-HHSSSSAHLICSLTRPRISRLLKVTAASSMELEQAGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRA
        M GSIV+N+PFPWA +LRFRSYL SN + SSSSAH +CSLTRP ISRL+K TAASSME+E+ G+SA V STASPMKLLFVEMGVGYDQHGQD+TAAAMRA
Subjt:  MRGSIVLNLPFPWATDLRFRSYLLSN-HHSSSSAHLICSLTRPRISRLLKVTAASSMELEQAGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRA

Query:  CRDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFP
        CRDAISSNSIPAFRRGSIPGVTF +MKLQIKLGVPQ+LQQSLD+EKVKSVFP
Subjt:  CRDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFP

XP_022925764.1 uncharacterized protein LOC111433074 [Cucurbita moschata]2.7e-6388.74Show/hide
Query:  MRGSIVLNLPFPWATDLRFRSYLLSNHHSSSSAHLICSLTRPRISRLLKVTAASSMELEQAGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRAC
        M GS VLNL FP  TDLRFRSY LSN HSSSSAHLICS TRP ISRL+KVTAASSME+EQ GKSAPV ST  PMKLLFVEMGVGYDQHGQDITAAAMRAC
Subjt:  MRGSIVLNLPFPWATDLRFRSYLLSNHHSSSSAHLICSLTRPRISRLLKVTAASSMELEQAGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRAC

Query:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFP
        RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVP SLQQSLD+EKVKSVFP
Subjt:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFP

XP_022977255.1 uncharacterized protein LOC111477623 [Cucurbita maxima]1.2e-6090.85Show/hide
Query:  MRGSIVLNLPFPWATDLRFRSYLLSNHHSSSSAHLICSLTRPRISRLLKVTAASSMELEQAGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRAC
        M GSIVLNL FP  TDLRFRSY LSN HSSSSAHLICS TRPRISRL+KVTAASSME+EQ GKSAPV STA PMKLLFVEMGVGYDQHGQDITAAAMRAC
Subjt:  MRGSIVLNLPFPWATDLRFRSYLLSNHHSSSSAHLICSLTRPRISRLLKVTAASSMELEQAGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRAC

Query:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLD
        RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVP SLQQSLD
Subjt:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLD

XP_023544561.1 uncharacterized protein LOC111804102 [Cucurbita pepo subsp. pepo]3.1e-6489.4Show/hide
Query:  MRGSIVLNLPFPWATDLRFRSYLLSNHHSSSSAHLICSLTRPRISRLLKVTAASSMELEQAGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRAC
        M GSIVLNL FP  TDLRFRSY LSN HSSSSAHLICS TRPRISRL+KVTAASSME+EQ GKSAPV ST  PMKLLFVEMGVGYDQHGQDITAAAMRAC
Subjt:  MRGSIVLNLPFPWATDLRFRSYLLSNHHSSSSAHLICSLTRPRISRLLKVTAASSMELEQAGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRAC

Query:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFP
        RDAISSNSIPAFRRGSIPGVTF EMKLQIKLGVP SLQQSLD+EKVKSVFP
Subjt:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFP

XP_038883708.1 uncharacterized protein LOC120074614 isoform X1 [Benincasa hispida]2.1e-6085.43Show/hide
Query:  MRGSIVLNLPFPWATDLRFRSYLLSNHHSSSSAHLICSLTRPRISRLLKVTAASSMELEQAGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRAC
        M GSIVLN  F   TD RFRSY LSN + S SAHLICSLTRPRISRL+KVTA SSME+EQ GKSAP  ST  PMKLLFVEMGVGYDQHGQDITAAAMRAC
Subjt:  MRGSIVLNLPFPWATDLRFRSYLLSNHHSSSSAHLICSLTRPRISRLLKVTAASSMELEQAGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRAC

Query:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFP
        RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVP SLQQSLD+EKVKSVFP
Subjt:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFP

TrEMBL top hitse value%identityAlignment
A0A0A0KNJ4 Uncharacterized protein3.0e-6084.11Show/hide
Query:  MRGSIVLNLPFPWATDLRFRSYLLSNHHSSSSAHLICSLTRPRISRLLKVTAASSMELEQAGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRAC
        M  SI+LNL F   TD RFRSY LSN H SSS HLICSLTRPRISRL+KVTA SSME+EQ G+SAPV ST  PMKLLFVEMGVGYDQHGQD+TAAAMRAC
Subjt:  MRGSIVLNLPFPWATDLRFRSYLLSNHHSSSSAHLICSLTRPRISRLLKVTAASSMELEQAGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRAC

Query:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFP
        RDAISSNSIPAFRRGSIPGV+FGEMKLQIKLGVP SLQQSLD+EKVKSVFP
Subjt:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFP

A0A1S4DTK6 uncharacterized protein LOC103484457 isoform X25.0e-6084.11Show/hide
Query:  MRGSIVLNLPFPWATDLRFRSYLLSNHHSSSSAHLICSLTRPRISRLLKVTAASSMELEQAGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRAC
        M GSI+LNL F   TD RFRSY  SN H SS  HLICSLTRPRISRL+KVTA SSME+EQ G+SAPV ST  PMKLLFVEMGVGYDQHGQDITAAAMRAC
Subjt:  MRGSIVLNLPFPWATDLRFRSYLLSNHHSSSSAHLICSLTRPRISRLLKVTAASSMELEQAGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRAC

Query:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFP
        RDAISSNSIPAFRRGSIPGV+FGEMKLQIKLGVP SLQQSLD+EKVKSVFP
Subjt:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFP

A0A6J1CMQ6 uncharacterized protein LOC111012382 isoform X16.4e-6383.55Show/hide
Query:  MRGSIVLNLPFPWATDLRFRSYLLSN-HHSSSSAHLICSLTRPRISRLLKVTAASSMELEQAGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRA
        M GSIV+N+PFPWA +LRFRSYL SN + SSSSAH +CSLTRP ISRL+K TAASSME+E+ G+SA V STASPMKLLFVEMGVGYDQHGQD+TAAAMRA
Subjt:  MRGSIVLNLPFPWATDLRFRSYLLSN-HHSSSSAHLICSLTRPRISRLLKVTAASSMELEQAGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRA

Query:  CRDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFP
        CRDAISSNSIPAFRRGSIPGVTF +MKLQIKLGVPQ+LQQSLD+EKVKSVFP
Subjt:  CRDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFP

A0A6J1ED44 uncharacterized protein LOC1114330741.3e-6388.74Show/hide
Query:  MRGSIVLNLPFPWATDLRFRSYLLSNHHSSSSAHLICSLTRPRISRLLKVTAASSMELEQAGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRAC
        M GS VLNL FP  TDLRFRSY LSN HSSSSAHLICS TRP ISRL+KVTAASSME+EQ GKSAPV ST  PMKLLFVEMGVGYDQHGQDITAAAMRAC
Subjt:  MRGSIVLNLPFPWATDLRFRSYLLSNHHSSSSAHLICSLTRPRISRLLKVTAASSMELEQAGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRAC

Query:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFP
        RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVP SLQQSLD+EKVKSVFP
Subjt:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFP

A0A6J1ILT2 uncharacterized protein LOC1114776236.0e-6190.85Show/hide
Query:  MRGSIVLNLPFPWATDLRFRSYLLSNHHSSSSAHLICSLTRPRISRLLKVTAASSMELEQAGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRAC
        M GSIVLNL FP  TDLRFRSY LSN HSSSSAHLICS TRPRISRL+KVTAASSME+EQ GKSAPV STA PMKLLFVEMGVGYDQHGQDITAAAMRAC
Subjt:  MRGSIVLNLPFPWATDLRFRSYLLSNHHSSSSAHLICSLTRPRISRLLKVTAASSMELEQAGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRAC

Query:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLD
        RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVP SLQQSLD
Subjt:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G29040.1 unknown protein2.9e-3670Show/hide
Query:  PRISRLLKVTAASSMELEQAGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSL
        P+ISR +KV A S+ME      +  V +  + MKLLFVEMGVGYDQHGQD+T+AAM+AC++AISSNSIPAFRRGSIPGV+FGEMKLQIKLGVP SL Q L
Subjt:  PRISRLLKVTAASSMELEQAGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSL

Query:  DVEKVKSVFP
        D++KVKS+FP
Subjt:  DVEKVKSVFP

AT1G29040.2 unknown protein1.4e-2558.18Show/hide
Query:  PRISRLLKVTAASSMELEQAGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSL
        P+ISR +KV A S+ME      +  V +  + MKLLFVEMGVGYDQHGQD+T+AAM+AC               SIPGV+FGEMKLQIKLGVP SL Q L
Subjt:  PRISRLLKVTAASSMELEQAGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSL

Query:  DVEKVKSVFP
        D++KVKS+FP
Subjt:  DVEKVKSVFP

AT1G29040.3 unknown protein9.5e-1964Show/hide
Query:  PRISRLLKVTAASSMELEQAGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSIPAFRRGS
        P+ISR +KV A S+ME      +  V +  + MKLLFVEMGVGYDQHGQD+T+AAM+AC++AISSNSIPAFRRG+
Subjt:  PRISRLLKVTAASSMELEQAGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSIPAFRRGS

AT1G29040.4 unknown protein2.9e-3670Show/hide
Query:  PRISRLLKVTAASSMELEQAGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSL
        P+ISR +KV A S+ME      +  V +  + MKLLFVEMGVGYDQHGQD+T+AAM+AC++AISSNSIPAFRRGSIPGV+FGEMKLQIKLGVP SL Q L
Subjt:  PRISRLLKVTAASSMELEQAGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSL

Query:  DVEKVKSVFP
        D++KVKS+FP
Subjt:  DVEKVKSVFP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGTTCCATAGTCCTAAATCTGCCATTTCCTTGGGCGACTGATCTTAGATTTCGTTCTTACCTTCTTTCTAATCATCATTCTTCTTCATCTGCCCATTTGATCTG
CTCTCTTACACGCCCTCGAATTTCTCGCCTTCTCAAAGTTACTGCTGCCTCGTCCATGGAGCTCGAGCAAGCTGGAAAGTCTGCACCTGTTAGCAGCACAGCTTCGCCCA
TGAAGCTCTTGTTCGTTGAGATGGGTGTTGGCTACGATCAACATGGCCAAGATATCACGGCGGCTGCAATGCGAGCCTGCAGGGATGCCATATCTTCCAATTCGATTCCA
GCATTCCGTAGAGGTTCCATTCCTGGAGTCACATTTGGTGAGATGAAACTACAGATCAAACTTGGAGTTCCACAGTCTCTTCAACAATCCTTGGACGTTGAAAAAGTCAA
GTCCGTCTTCCCATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAGGTTCCATAGTCCTAAATCTGCCATTTCCTTGGGCGACTGATCTTAGATTTCGTTCTTACCTTCTTTCTAATCATCATTCTTCTTCATCTGCCCATTTGATCTG
CTCTCTTACACGCCCTCGAATTTCTCGCCTTCTCAAAGTTACTGCTGCCTCGTCCATGGAGCTCGAGCAAGCTGGAAAGTCTGCACCTGTTAGCAGCACAGCTTCGCCCA
TGAAGCTCTTGTTCGTTGAGATGGGTGTTGGCTACGATCAACATGGCCAAGATATCACGGCGGCTGCAATGCGAGCCTGCAGGGATGCCATATCTTCCAATTCGATTCCA
GCATTCCGTAGAGGTTCCATTCCTGGAGTCACATTTGGTGAGATGAAACTACAGATCAAACTTGGAGTTCCACAGTCTCTTCAACAATCCTTGGACGTTGAAAAAGTCAA
GTCCGTCTTCCCATAG
Protein sequenceShow/hide protein sequence
MRGSIVLNLPFPWATDLRFRSYLLSNHHSSSSAHLICSLTRPRISRLLKVTAASSMELEQAGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSIP
AFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFP