CuGenDBv2

Gene ID	Lag0013942
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	cyclic phosphodiesterase-like
Genome location	chr1:53870773..53872174
RNA-Seq Expression	Lag0013942
Synteny	Lag0013942
Gene Ontology terms	GO:0009187 - cyclic nucleotide metabolic process (biological process) GO:0004113 - 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity (molecular function)
InterPro domains	IPR009097 - Cyclic phosphodiesterase IPR012386 - 2',3'-cyclic-nucleotide 3'-phosphodiesterase

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6581386.1 Cyclic phosphodiesterase, partial [Cucurbita argyrosperma subsp. sororia]

8.0e-89

82.9

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Query:  MANPESAPLGPSEADGKNVYSVWALPPEDVAARIKTFMNSLRIEFGGPQFEPHITVVGATRLTPEDALNKFRSACQGLKAYQATVDHVSIGTFFYQCVFF
        MANPES P+ PSE + KNVYSVWALPPEDV ARI+T MNSLR EFGGPQFEPHITVVGA RLT +DALNKFRSAC+GLKAYQATVD VS GTFFYQCVF 
Subjt:  MANPESAPLGPSEADGKNVYSVWALPPEDVAARIKTFMNSLRIEFGGPQFEPHITVVGATRLTPEDALNKFRSACQGLKAYQATVDHVSIGTFFYQCVFF

Query:  LIHPTTEVMDTSSHCCGHFGFNDSTPYMPHLSLLYANISEEKKKKAREIADTLDEAINGLKFPITRLALYKTDTGDETLESWEKIAEHNLPSS
        LIHPTT+V++TSSHCCGHFG+N+STPYMPHLSLLYANIS+E+KK+A+E+A+ LDEAINGL FPITRLALYKTDTGDETL+SWEKIAE +LPSS
Subjt:  LIHPTTEVMDTSSHCCGHFGFNDSTPYMPHLSLLYANISEEKKKKAREIADTLDEAINGLKFPITRLALYKTDTGDETLESWEKIAEHNLPSS

KAG7034670.1 Cyclic phosphodiesterase, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.3e-88

82.9

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Query:  MANPESAPLGPSEADGKNVYSVWALPPEDVAARIKTFMNSLRIEFGGPQFEPHITVVGATRLTPEDALNKFRSACQGLKAYQATVDHVSIGTFFYQCVFF
        MANPES P+ PSE + KNVYSVWALPPEDV ARI+T MNSLR EFGGPQFEPHITVVGA RLT +DALNKFRSAC+GLKAYQATVD VS GTFFYQCVF 
Subjt:  MANPESAPLGPSEADGKNVYSVWALPPEDVAARIKTFMNSLRIEFGGPQFEPHITVVGATRLTPEDALNKFRSACQGLKAYQATVDHVSIGTFFYQCVFF

Query:  LIHPTTEVMDTSSHCCGHFGFNDSTPYMPHLSLLYANISEEKKKKAREIADTLDEAINGLKFPITRLALYKTDTGDETLESWEKIAEHNLPSS
        LIHPTT+V++TSSHCCGHFG N+STPYMPHLSLLYANIS+E+KK+A+E+A+ LDEAINGL FPITRLALYKTDTGDETL+SWEKIAE +LPSS
Subjt:  LIHPTTEVMDTSSHCCGHFGFNDSTPYMPHLSLLYANISEEKKKKAREIADTLDEAINGLKFPITRLALYKTDTGDETLESWEKIAEHNLPSS

XP_023522563.1 cyclic phosphodiesterase-like [Cucurbita pepo subsp. pepo]

6.8e-88

82.38

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Query:  MANPESAPLGPSEADGKNVYSVWALPPEDVAARIKTFMNSLRIEFGGPQFEPHITVVGATRLTPEDALNKFRSACQGLKAYQATVDHVSIGTFFYQCVFF
        MANPES P+ PSE + KNVYSVWALPPEDV ARI+T MNSLR EFGGPQFEPHITVVGA RLT +DALNKFRSAC+GLKAYQATVD VS GTFFYQCVF 
Subjt:  MANPESAPLGPSEADGKNVYSVWALPPEDVAARIKTFMNSLRIEFGGPQFEPHITVVGATRLTPEDALNKFRSACQGLKAYQATVDHVSIGTFFYQCVFF

Query:  LIHPTTEVMDTSSHCCGHFGFNDSTPYMPHLSLLYANISEEKKKKAREIADTLDEAINGLKFPITRLALYKTDTGDETLESWEKIAEHNLPSS
        LIHPT EV++TSSHCCGHFG+ +STPYMPHLSLLYANIS+E+KK+A+E+A+ LDEAINGL FPITRLALYKTDTGDETL+SWEKIAE +LPSS
Subjt:  LIHPTTEVMDTSSHCCGHFGFNDSTPYMPHLSLLYANISEEKKKKAREIADTLDEAINGLKFPITRLALYKTDTGDETLESWEKIAEHNLPSS

XP_023543945.1 cyclic phosphodiesterase-like isoform X2 [Cucurbita pepo subsp. pepo]

3.1e-88

82.38

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Query:  MANPESAPLGPSEADGKNVYSVWALPPEDVAARIKTFMNSLRIEFGGPQFEPHITVVGATRLTPEDALNKFRSACQGLKAYQATVDHVSIGTFFYQCVFF
        MANPES P+ PSE + KNVYSVWALPPEDV ARI+T MNSLR EFGGPQFEPHITVVGA RLT +DALNKFRSAC+GLKAYQATVD VS GTFFYQCVF 
Subjt:  MANPESAPLGPSEADGKNVYSVWALPPEDVAARIKTFMNSLRIEFGGPQFEPHITVVGATRLTPEDALNKFRSACQGLKAYQATVDHVSIGTFFYQCVFF

Query:  LIHPTTEVMDTSSHCCGHFGFNDSTPYMPHLSLLYANISEEKKKKAREIADTLDEAINGLKFPITRLALYKTDTGDETLESWEKIAEHNLPSS
        LIHPTT+V++TSSHCCGHFG+ +STPYMPHLSLLYANIS+E+KK+A+E+A+ LDEAINGL FPITRLALYKTDTGDETL+SWEKIAE +LPSS
Subjt:  LIHPTTEVMDTSSHCCGHFGFNDSTPYMPHLSLLYANISEEKKKKAREIADTLDEAINGLKFPITRLALYKTDTGDETLESWEKIAEHNLPSS

XP_038882567.1 cyclic phosphodiesterase-like [Benincasa hispida]

4.3e-90

84.46

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Query:  MANPESAPLGPSEADGKNVYSVWALPPEDVAARIKTFMNSLRIEFGGPQFEPHITVVGATRLTPEDALNKFRSACQGLKAYQATVDHVSIGTFFYQCVFF
        MANPESA + PSEA+  NVYSVWALPPEDV ARIK  MNSLR EFGGPQFEPHITVVGA RLTP+DALNKFRSACQGLKAYQATVDHVS GTFFYQCVF 
Subjt:  MANPESAPLGPSEADGKNVYSVWALPPEDVAARIKTFMNSLRIEFGGPQFEPHITVVGATRLTPEDALNKFRSACQGLKAYQATVDHVSIGTFFYQCVFF

Query:  LIHPTTEVMDTSSHCCGHFGFNDSTPYMPHLSLLYANISEEKKKKAREIADTLDEAINGLKFPITRLALYKTDTGDETLESWEKIAEHNLPSS
        LIH TTEV++TSSHCCGHFG+ +STPYMPH+SLLYANIS+EKKK+A+ IAD LDEA+NGLKFPITRLALYKTDT DETL+SWEKIAEH LPSS
Subjt:  LIHPTTEVMDTSSHCCGHFGFNDSTPYMPHLSLLYANISEEKKKKAREIADTLDEAINGLKFPITRLALYKTDTGDETLESWEKIAEHNLPSS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3AYZ1 cyclic phosphodiesterase-like

1.1e-83

79.27

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Query:  MANPESAPLGPSEADGKNVYSVWALPPEDVAARIKTFMNSLRIEFGGPQFEPHITVVGATRLTPEDALNKFRSACQGLKAYQATVDHVSIGTFFYQCVFF
        M NPESA +  SE +  NVYSVWALPPEDV+ARI+  MNSLR EFGGPQFEPHITVVGA RLT EDALNKF +ACQG+KAYQATVDHVS GTFFYQCVF 
Subjt:  MANPESAPLGPSEADGKNVYSVWALPPEDVAARIKTFMNSLRIEFGGPQFEPHITVVGATRLTPEDALNKFRSACQGLKAYQATVDHVSIGTFFYQCVFF

Query:  LIHPTTEVMDTSSHCCGHFGFNDSTPYMPHLSLLYANISEEKKKKAREIADTLDEAINGLKFPITRLALYKTDTGDETLESWEKIAEHNLPSS
        LIHPTTEV++TSSH C HFGF +STPYMPH+SLLYA+IS+EKKK+A+EIAD LDEA+NGLKFPITRLAL+KTDT DETL+SWEKI EH+L SS
Subjt:  LIHPTTEVMDTSSHCCGHFGFNDSTPYMPHLSLLYANISEEKKKKAREIADTLDEAINGLKFPITRLALYKTDTGDETLESWEKIAEHNLPSS

A0A6J1EEQ8 cyclic phosphodiesterase-like

5.8e-85

78.76

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Query:  MANPESAPLGPSEADGKNVYSVWALPPEDVAARIKTFMNSLRIEFGGPQFEPHITVVGATRLTPEDALNKFRSACQGLKAYQATVDHVSIGTFFYQCVFF
        MANP SAP+ P E +   +YSVWALPPEDVA +I + M+SLR EFGGP+FEPHITVVGA RLTP+DALNKFRSAC+G+KAYQATVD VSIGT FYQCVF 
Subjt:  MANPESAPLGPSEADGKNVYSVWALPPEDVAARIKTFMNSLRIEFGGPQFEPHITVVGATRLTPEDALNKFRSACQGLKAYQATVDHVSIGTFFYQCVFF

Query:  LIHPTTEVMDTSSHCCGHFGFNDSTPYMPHLSLLYANISEEKKKKAREIADTLDEAINGLKFPITRLALYKTDTGDETLESWEKIAEHNLPSS
        LIHPTTEV+  SSHCCGHFG+N+STPYMPHLSLLYANIS+E KK+A+EIAD L+EA+NGLK P+TRLALYKTDTGDETL+SWEKIAEH+LPSS
Subjt:  LIHPTTEVMDTSSHCCGHFGFNDSTPYMPHLSLLYANISEEKKKKAREIADTLDEAINGLKFPITRLALYKTDTGDETLESWEKIAEHNLPSS

A0A6J1EGC1 cyclic phosphodiesterase-like

1.4e-86

81.87

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Query:  MANPESAPLGPSEADGKNVYSVWALPPEDVAARIKTFMNSLRIEFGGPQFEPHITVVGATRLTPEDALNKFRSACQGLKAYQATVDHVSIGTFFYQCVFF
        MANPES P+ PSE + KNVYSVWALPPEDV ARI+T MNSLR EFGGPQFEPHITVVGA RLT +DALNKFRSAC+GLKAYQATVD VS GTFFYQCVF 
Subjt:  MANPESAPLGPSEADGKNVYSVWALPPEDVAARIKTFMNSLRIEFGGPQFEPHITVVGATRLTPEDALNKFRSACQGLKAYQATVDHVSIGTFFYQCVFF

Query:  LIHPTTEVMDTSSHCCGHFGFNDSTPYMPHLSLLYANISEEKKKKAREIADTLDEAINGLKFPITRLALYKTDTGDETLESWEKIAEHNLPSS
        LIHPTT+V++TSSHCCGHFG+  +TPYMPHLSLLYANIS+E+KK+A+E+A+ LDEAINGL FPITRLALYKTDTGDETL+SWEKIAE +LPSS
Subjt:  LIHPTTEVMDTSSHCCGHFGFNDSTPYMPHLSLLYANISEEKKKKAREIADTLDEAINGLKFPITRLALYKTDTGDETLESWEKIAEHNLPSS

A0A6J1INY2 cyclic phosphodiesterase-like

2.1e-87

81.35

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Query:  MANPESAPLGPSEADGKNVYSVWALPPEDVAARIKTFMNSLRIEFGGPQFEPHITVVGATRLTPEDALNKFRSACQGLKAYQATVDHVSIGTFFYQCVFF
        MANPES  + PSE + KNVYSVWALPPEDV ARI+T MNSLR EFGGPQFEPHITVVGA RLT +DALNKFRSAC+GLKAYQATVD VS GTFFYQCVF 
Subjt:  MANPESAPLGPSEADGKNVYSVWALPPEDVAARIKTFMNSLRIEFGGPQFEPHITVVGATRLTPEDALNKFRSACQGLKAYQATVDHVSIGTFFYQCVFF

Query:  LIHPTTEVMDTSSHCCGHFGFNDSTPYMPHLSLLYANISEEKKKKAREIADTLDEAINGLKFPITRLALYKTDTGDETLESWEKIAEHNLPSS
        LIHPTT+V++TSSHCCGHFG+ +STPYMPHLSLLYANIS+E+KK+A+E+A+ LDEAINGL FP+TRLALYKTDTGDETL+SWEKIAE +LPSS
Subjt:  LIHPTTEVMDTSSHCCGHFGFNDSTPYMPHLSLLYANISEEKKKKAREIADTLDEAINGLKFPITRLALYKTDTGDETLESWEKIAEHNLPSS

A0A6J1KNB2 cyclic phosphodiesterase-like

2.9e-84

78.76

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Query:  MANPESAPLGPSEADGKNVYSVWALPPEDVAARIKTFMNSLRIEFGGPQFEPHITVVGATRLTPEDALNKFRSACQGLKAYQATVDHVSIGTFFYQCVFF
        MANP SAP+ P E +   +YSVWALPPEDVA +I + M+SLR EFGGP+FEPHITVVGA RLTP+DALNKFRSAC+G+KAYQATVD VSIGT FYQCVF 
Subjt:  MANPESAPLGPSEADGKNVYSVWALPPEDVAARIKTFMNSLRIEFGGPQFEPHITVVGATRLTPEDALNKFRSACQGLKAYQATVDHVSIGTFFYQCVFF

Query:  LIHPTTEVMDTSSHCCGHFGFNDSTPYMPHLSLLYANISEEKKKKAREIADTLDEAINGLKFPITRLALYKTDTGDETLESWEKIAEHNLPSS
        LIHPTTEV+  SSHCCGHFG N+STPYMPHLSLLYANIS+E KK+A+EIAD L+EA+NGLK P+TRLALYKTDTGDETL+SWEKIAEH+LPSS
Subjt:  LIHPTTEVMDTSSHCCGHFGFNDSTPYMPHLSLLYANISEEKKKKAREIADTLDEAINGLKFPITRLALYKTDTGDETLESWEKIAEHNLPSS

SwissProt top hits

e value

%identity

Alignment

O04147 Cyclic phosphodiesterase

2.3e-54

58.05

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Query:  KNVYSVWALPPEDVAARIKTFMNSLRIEFGGPQFEPHITVVGATRLTPEDALNKFRSACQGLKAYQATVDHVSIGTFFYQCVFFLIHPTTEVMDTSSHCC
        K+VYSVWALP E+   R K  M +LR EF GP+F PH+TV  +  LT ++A   F SAC GLKAY ATVD VS GTFF+QCVF L+  T EVM+   HC 
Subjt:  KNVYSVWALPPEDVAARIKTFMNSLRIEFGGPQFEPHITVVGATRLTPEDALNKFRSACQGLKAYQATVDHVSIGTFFYQCVFFLIHPTTEVMDTSSHCC

Query:  GHFGFNDSTPYMPHLSLLYANISEEKKKKAREIADTLDEAINGLKFPITRLALYKTDTGDETLESWEKIAEHNL
         HF  + +TPYMPHLSLLYA ++EE+KK A+E A TLD +++GL F + RLAL KTDT D+TLE+WE +A  NL
Subjt:  GHFGFNDSTPYMPHLSLLYANISEEKKKKAREIADTLDEAINGLKFPITRLALYKTDTGDETLESWEKIAEHNL

Arabidopsis top hits

e value

%identity

Alignment

AT4G18930.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein

1.6e-55

58.05

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Query:  KNVYSVWALPPEDVAARIKTFMNSLRIEFGGPQFEPHITVVGATRLTPEDALNKFRSACQGLKAYQATVDHVSIGTFFYQCVFFLIHPTTEVMDTSSHCC
        K+VYSVWALP E+   R K  M +LR EF GP+F PH+TV  +  LT ++A   F SAC GLKAY ATVD VS GTFF+QCVF L+  T EVM+   HC 
Subjt:  KNVYSVWALPPEDVAARIKTFMNSLRIEFGGPQFEPHITVVGATRLTPEDALNKFRSACQGLKAYQATVDHVSIGTFFYQCVFFLIHPTTEVMDTSSHCC

Query:  GHFGFNDSTPYMPHLSLLYANISEEKKKKAREIADTLDEAINGLKFPITRLALYKTDTGDETLESWEKIAEHNL
         HF  + +TPYMPHLSLLYA ++EE+KK A+E A TLD +++GL F + RLAL KTDT D+TLE+WE +A  NL
Subjt:  GHFGFNDSTPYMPHLSLLYANISEEKKKKAREIADTLDEAINGLKFPITRLALYKTDTGDETLESWEKIAEHNL

AT4G18940.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein

3.5e-42

42.71

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Query:  MANPESAPLGP-----SEADGKNVYSVWALPPEDVAARIKTFMNSLRIEFGGPQFEPHITVVG--ATRLTPEDALNKFRSACQGLKAYQATVDHVSIGTF
        M    + PL P      + + K +Y++WA+P +DV  R++  M  LR EFGGP F+PH+T+VG    +LT  +A   F+SAC+G K Y ATVD VS GT 
Subjt:  MANPESAPLGP-----SEADGKNVYSVWALPPEDVAARIKTFMNSLRIEFGGPQFEPHITVVG--ATRLTPEDALNKFRSACQGLKAYQATVDHVSIGTF

Query:  FYQCVFFLIHPTTEVMDTSSHCCGHFGFNDSTPYMPHLSLLYANISEEKKKKAREIADTLDEAINGLKFPITRLALYKTDTGDETLESWEKIAEHNLPS
        ++QC++  +  T EVM+ + H   HF       Y+PH+S+LY +++E +KKKA E A TLD +++GL F I R+AL+ TD     + SW K+ EH L S
Subjt:  FYQCVFFLIHPTTEVMDTSSHCCGHFGFNDSTPYMPHLSLLYANISEEKKKKAREIADTLDEAINGLKFPITRLALYKTDTGDETLESWEKIAEHNLPS

Sequences

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CDS sequence

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ATGGCGAACCCAGAATCCGCCCCTCTTGGACCCTCTGAAGCCGACGGCAAGAACGTGTATTCGGTGTGGGCTCTTCCTCCAGAAGATGTGGCGGCCAGAATCAAGACTTT
CATGAACAGCCTCAGAATCGAGTTCGGTGGCCCCCAATTCGAGCCTCACATCACCGTCGTTGGGGCCACCCGTCTCACCCCTGAGGATGCCCTCAACAAATTCCGCTCCG
CTTGCCAGGGCCTCAAGGCTTATCAAGCCACCGTCGATCATGTATCTATCGGAACCTTCTTCTACCAGTGTGTCTTTTTCCTTATTCATCCTACCACCGAGGTCATGGAC
ACTAGTTCACATTGCTGCGGACATTTTGGATTCAACGACTCTACCCCTTACATGCCGCATTTGAGCCTACTGTATGCCAACATATCAGAAGAGAAAAAGAAGAAGGCAAG
AGAAATAGCGGACACACTGGATGAAGCCATTAATGGCTTGAAGTTCCCAATCACTCGACTTGCATTGTACAAAACAGACACTGGGGATGAAACTCTAGAGTCCTGGGAGA
AAATTGCAGAACACAATCTTCCTTCTTCAAGTTAG

mRNA sequence

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Protein sequence

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MANPESAPLGPSEADGKNVYSVWALPPEDVAARIKTFMNSLRIEFGGPQFEPHITVVGATRLTPEDALNKFRSACQGLKAYQATVDHVSIGTFFYQCVFFLIHPTTEVMD
TSSHCCGHFGFNDSTPYMPHLSLLYANISEEKKKKAREIADTLDEAINGLKFPITRLALYKTDTGDETLESWEKIAEHNLPSSS

Lag0013942 (gene) of Sponge gourd (AG-4) v1 genome