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Lag0014043 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0014043
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionprotein PLASTID TRANSCRIPTIONALLY ACTIVE 12 isoform X1
Genome locationchr1:54747554..54749315
RNA-Seq ExpressionLag0014043
SyntenyLag0014043
Gene Ontology termsGO:0009637 - response to blue light (biological process)
GO:0010114 - response to red light (biological process)
GO:0010218 - response to far red light (biological process)
GO:0042793 - plastid transcription (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0090228 - positive regulation of red or far-red light signaling pathway (biological process)
GO:0000427 - plastid-encoded plastid RNA polymerase complex (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0009507 - chloroplast (cellular component)
InterPro domainsIPR034581 - Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6594437.1 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]4.8e-3596.43Show/hide
Query:  VTDMDDAMAQAIDIGENDDGEDSEVEGDEEAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGAIDDSENLTDFLMDFEEDE
        VTD+DDAM+QAIDIGENDDGEDSEVEGDEEAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGA+DDSENLTDFLMDFEEDE
Subjt:  VTDMDDAMAQAIDIGENDDGEDSEVEGDEEAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGAIDDSENLTDFLMDFEEDE

KAG7026443.1 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12 [Cucurbita argyrosperma subsp. argyrosperma]4.8e-3596.43Show/hide
Query:  VTDMDDAMAQAIDIGENDDGEDSEVEGDEEAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGAIDDSENLTDFLMDFEEDE
        VTD+DDAM+QAIDIGENDDGEDSEVEGDEEAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGA+DDSENLTDFLMDFEEDE
Subjt:  VTDMDDAMAQAIDIGENDDGEDSEVEGDEEAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGAIDDSENLTDFLMDFEEDE

XP_023003460.1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic [Cucurbita maxima]4.8e-3596.43Show/hide
Query:  VTDMDDAMAQAIDIGENDDGEDSEVEGDEEAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGAIDDSENLTDFLMDFEEDE
        VTD+DDAM+QAIDIGENDDGEDSEVEGDEEAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGA+DDSENLTDFLMDFEEDE
Subjt:  VTDMDDAMAQAIDIGENDDGEDSEVEGDEEAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGAIDDSENLTDFLMDFEEDE

XP_023517662.1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic [Cucurbita pepo subsp. pepo]4.8e-3596.43Show/hide
Query:  VTDMDDAMAQAIDIGENDDGEDSEVEGDEEAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGAIDDSENLTDFLMDFEEDE
        VTD+DDAM+QAIDIGENDDGEDSEVEGDEEAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGA+DDSENLTDFLMDFEEDE
Subjt:  VTDMDDAMAQAIDIGENDDGEDSEVEGDEEAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGAIDDSENLTDFLMDFEEDE

XP_038883750.1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic [Benincasa hispida]1.1e-3497.62Show/hide
Query:  VTDMDDAMAQAIDIGENDDGEDSEVEGDEEAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGAIDDSENLTDFLMDFEEDE
        VTDMDDAMAQAIDIGENDDGEDSEVEGDEEAEEKITRNWSVLKSSPHLNK KGKPKKEDPASLEGAID+SENLTDFLMDFEEDE
Subjt:  VTDMDDAMAQAIDIGENDDGEDSEVEGDEEAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGAIDDSENLTDFLMDFEEDE

TrEMBL top hitse value%identityAlignment
A0A0A0KM32 Uncharacterized protein2.8e-3392.86Show/hide
Query:  VTDMDDAMAQAIDIGENDDGEDSEVEGDEEAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGAIDDSENLTDFLMDFEEDE
        VTDMDDAMAQAIDIGENDDGEDSEVEGDEEAEEKITRNWSVLKSSPHL+K KGKP K+DPASL+GAID+SENLTDFLMDFEEDE
Subjt:  VTDMDDAMAQAIDIGENDDGEDSEVEGDEEAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGAIDDSENLTDFLMDFEEDE

A0A6J1CYT6 protein PLASTID TRANSCRIPTIONALLY ACTIVE 12 isoform X21.5e-3495.24Show/hide
Query:  VTDMDDAMAQAIDIGENDDGEDSEVEGDEEAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGAIDDSENLTDFLMDFEEDE
        VTDM+DAMAQAIDIGENDDGEDSEVEGD+EAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASL+GAID+SENLTDFLMDFEEDE
Subjt:  VTDMDDAMAQAIDIGENDDGEDSEVEGDEEAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGAIDDSENLTDFLMDFEEDE

A0A6J1CZ74 protein PLASTID TRANSCRIPTIONALLY ACTIVE 12 isoform X11.5e-3495.24Show/hide
Query:  VTDMDDAMAQAIDIGENDDGEDSEVEGDEEAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGAIDDSENLTDFLMDFEEDE
        VTDM+DAMAQAIDIGENDDGEDSEVEGD+EAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASL+GAID+SENLTDFLMDFEEDE
Subjt:  VTDMDDAMAQAIDIGENDDGEDSEVEGDEEAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGAIDDSENLTDFLMDFEEDE

A0A6J1EIK5 protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic8.8e-3595.24Show/hide
Query:  VTDMDDAMAQAIDIGENDDGEDSEVEGDEEAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGAIDDSENLTDFLMDFEEDE
        VTD+DDAM+QAIDIGENDDGEDSEVEGDEEAEEKITRNWSVLKSSPHLN SKGKPKKEDPASLEGA+DDSENLTDFLMDFEEDE
Subjt:  VTDMDDAMAQAIDIGENDDGEDSEVEGDEEAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGAIDDSENLTDFLMDFEEDE

A0A6J1KRU0 protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic2.3e-3596.43Show/hide
Query:  VTDMDDAMAQAIDIGENDDGEDSEVEGDEEAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGAIDDSENLTDFLMDFEEDE
        VTD+DDAM+QAIDIGENDDGEDSEVEGDEEAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGA+DDSENLTDFLMDFEEDE
Subjt:  VTDMDDAMAQAIDIGENDDGEDSEVEGDEEAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGAIDDSENLTDFLMDFEEDE

SwissProt top hitse value%identityAlignment
B4FZ81 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic5.0e-1145.28Show/hide
Query:  VTDMDDAMAQAIDIGENDDGEDSEVEGDE----------------------EAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGAIDDSENLTDFLM
        + +  D MA AIDIGE+   EDS+ E ++                      E EEK+ +NWS LKS+    K K K KK D  +L+ AIDDSENLTDFLM
Subjt:  VTDMDDAMAQAIDIGENDDGEDSEVEGDE----------------------EAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGAIDDSENLTDFLM

Query:  DFEEDE
        DFEE E
Subjt:  DFEEDE

F4IHY7 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic2.0e-2066.67Show/hide
Query:  VTDMDDAMAQAIDIGENDDGE-DSEVEGDEEAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGAIDDSENLTDFLMDFEED
        V DMDDAMAQA+DIGENDD E D++VE D   +EK+ RNWSVLK +P L  +K KPKKE   SL+ A+DD+ENLTDFLMDFEE+
Subjt:  VTDMDDAMAQAIDIGENDDGE-DSEVEGDEEAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGAIDDSENLTDFLMDFEED

Q0JIZ1 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic2.9e-1147.12Show/hide
Query:  DMDDAMAQAIDIGE---NDDGEDSEVEGD-------------------EEAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGAIDDSENLTDFLMDF
        ++ D MA A+DIGE   N+D +D E + D                   E+AE K++RNWSVLK++      K K KK D  SL+ AI DSENLTDFLMDF
Subjt:  DMDDAMAQAIDIGE---NDDGEDSEVEGD-------------------EEAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGAIDDSENLTDFLMDF

Query:  EEDE
        EEDE
Subjt:  EEDE

Arabidopsis top hitse value%identityAlignment
AT2G34640.1 plastid transcriptionally active 121.4e-2166.67Show/hide
Query:  VTDMDDAMAQAIDIGENDDGE-DSEVEGDEEAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGAIDDSENLTDFLMDFEED
        V DMDDAMAQA+DIGENDD E D++VE D   +EK+ RNWSVLK +P L  +K KPKKE   SL+ A+DD+ENLTDFLMDFEE+
Subjt:  VTDMDDAMAQAIDIGENDDGE-DSEVEGDEEAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGAIDDSENLTDFLMDFEED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACCAATCAAGAATGGTGGCTAGGGTTCCGACGGCGGCGGTGGCTAGGGTTTCGAAAAGTATGGTGACGGATATGGATGATGCTATGGCCCAAGCTATTGATATTGG
TGAAAATGACGATGGAGAGGATAGTGAGGTTGAGGGCGATGAAGAGGCCGAGGAAAAAATCACACGCAACTGGAGCGTCTTGAAAAGTAGTCCCCATCTCAACAAGTCAA
AGGGGAAGCCTAAAAAGGAGGATCCAGCATCATTGGAGGGAGCCATTGATGACTCTGAGAACTTGACTGATTTTCTTATGGACTTCGAAGAAGATGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCACCAATCAAGAATGGTGGCTAGGGTTCCGACGGCGGCGGTGGCTAGGGTTTCGAAAAGTATGGTGACGGATATGGATGATGCTATGGCCCAAGCTATTGATATTGG
TGAAAATGACGATGGAGAGGATAGTGAGGTTGAGGGCGATGAAGAGGCCGAGGAAAAAATCACACGCAACTGGAGCGTCTTGAAAAGTAGTCCCCATCTCAACAAGTCAA
AGGGGAAGCCTAAAAAGGAGGATCCAGCATCATTGGAGGGAGCCATTGATGACTCTGAGAACTTGACTGATTTTCTTATGGACTTCGAAGAAGATGAGTGA
Protein sequenceShow/hide protein sequence
MHQSRMVARVPTAAVARVSKSMVTDMDDAMAQAIDIGENDDGEDSEVEGDEEAEEKITRNWSVLKSSPHLNKSKGKPKKEDPASLEGAIDDSENLTDFLMDFEEDE