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Lag0014055 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0014055
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionF-box protein SKIP19-like
Genome locationchr1:54823214..54823940
RNA-Seq ExpressionLag0014055
SyntenyLag0014055
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001611 - Leucine-rich repeat
IPR032675 - Leucine-rich repeat domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052508.1 putative F-box/LRR-repeat protein 9 [Cucumis melo var. makuwa]2.9e-1547.86Show/hide
Query:  NKLRRLRIAVCFEISDEGLTKA----------------------------------LKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGLTDRGL
        ++L+RL IA CF ISD GL KA                                  LKLN++F  G+ MV DREA+A+A+TMPKL HLQI GN L+D+GL
Subjt:  NKLRRLRIAVCFEISDEGLTKA----------------------------------LKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGLTDRGL

Query:  SAILRRCPDLESLDLRQ
         AIL  C DLESLDLRQ
Subjt:  SAILRRCPDLESLDLRQ

KAG6581459.1 F-box protein SKIP19, partial [Cucurbita argyrosperma subsp. sororia]6.4e-1545.08Show/hide
Query:  IESDQNKLRRLRIAVCFEISDEGLTKA----------------------------------LKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGL
        I    N+LR+LR+  C  ISDEGL KA                                  LKLN++F++   +  D+ ALA+AE MP L HLQIFGN L
Subjt:  IESDQNKLRRLRIAVCFEISDEGLTKA----------------------------------LKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGL

Query:  TDRGLSAILRRCPDLESLDLRQ
        T+RGL AIL  CPDLESLDLRQ
Subjt:  TDRGLSAILRRCPDLESLDLRQ

XP_004134904.1 putative F-box/LRR-repeat protein 9 [Cucumis sativus]4.0e-1750.86Show/hide
Query:  NKLRRLRIAVCFEISDEGLTKA----------------------------------LKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGLTDRGL
        N+L+RL IA CF ISD GL KA                                  LKLN++F  G+ M  DREALA+A+TMPKL HLQIFGN LTD+GL
Subjt:  NKLRRLRIAVCFEISDEGLTKA----------------------------------LKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGLTDRGL

Query:  SAILRRCPDLESLDLR
         AIL  CPDLESLDLR
Subjt:  SAILRRCPDLESLDLR

XP_008439579.1 PREDICTED: putative F-box/LRR-repeat protein 9 [Cucumis melo]2.9e-1547.86Show/hide
Query:  NKLRRLRIAVCFEISDEGLTKA----------------------------------LKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGLTDRGL
        ++L+RL IA CF ISD GL KA                                  LKLN++F  G+ MV DREA+A+A+TMPKL HLQI GN L+D+GL
Subjt:  NKLRRLRIAVCFEISDEGLTKA----------------------------------LKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGLTDRGL

Query:  SAILRRCPDLESLDLRQ
         AIL  C DLESLDLRQ
Subjt:  SAILRRCPDLESLDLRQ

XP_038883506.1 F-box protein SKIP19-like [Benincasa hispida]1.4e-1745.53Show/hide
Query:  IESDQNKLRRLRIAVCFEISDEGLTKALK-----------------------------------LNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNG
        I    N+LRRLR+A C++ISDEGLT+A+                                    + +++W+ + MV+++EALA+AETMPKL HLQI GNG
Subjt:  IESDQNKLRRLRIAVCFEISDEGLTKALK-----------------------------------LNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNG

Query:  LTDRGLSAILRRCPDLESLDLRQ
        LT+ GL AIL  CPDLESLDLRQ
Subjt:  LTDRGLSAILRRCPDLESLDLRQ

TrEMBL top hitse value%identityAlignment
A0A0A0KM43 F-box domain-containing protein1.9e-1750.86Show/hide
Query:  NKLRRLRIAVCFEISDEGLTKA----------------------------------LKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGLTDRGL
        N+L+RL IA CF ISD GL KA                                  LKLN++F  G+ M  DREALA+A+TMPKL HLQIFGN LTD+GL
Subjt:  NKLRRLRIAVCFEISDEGLTKA----------------------------------LKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGLTDRGL

Query:  SAILRRCPDLESLDLR
         AIL  CPDLESLDLR
Subjt:  SAILRRCPDLESLDLR

A0A1S3AZR6 putative F-box/LRR-repeat protein 91.4e-1547.86Show/hide
Query:  NKLRRLRIAVCFEISDEGLTKA----------------------------------LKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGLTDRGL
        ++L+RL IA CF ISD GL KA                                  LKLN++F  G+ MV DREA+A+A+TMPKL HLQI GN L+D+GL
Subjt:  NKLRRLRIAVCFEISDEGLTKA----------------------------------LKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGLTDRGL

Query:  SAILRRCPDLESLDLRQ
         AIL  C DLESLDLRQ
Subjt:  SAILRRCPDLESLDLRQ

A0A5A7UBE1 Putative F-box/LRR-repeat protein 91.4e-1547.86Show/hide
Query:  NKLRRLRIAVCFEISDEGLTKA----------------------------------LKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGLTDRGL
        ++L+RL IA CF ISD GL KA                                  LKLN++F  G+ MV DREA+A+A+TMPKL HLQI GN L+D+GL
Subjt:  NKLRRLRIAVCFEISDEGLTKA----------------------------------LKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGLTDRGL

Query:  SAILRRCPDLESLDLRQ
         AIL  C DLESLDLRQ
Subjt:  SAILRRCPDLESLDLRQ

A0A6J1ECV6 F-box protein SKIP19-like isoform X15.3e-1545.08Show/hide
Query:  IESDQNKLRRLRIAVCFEISDEGLTKA----------------------------------LKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGL
        I    N+LR LR+  C  ISDEGL KA                                  LKLN++F++   +  D+ ALA+AE MP L HLQIFGN L
Subjt:  IESDQNKLRRLRIAVCFEISDEGLTKA----------------------------------LKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGL

Query:  TDRGLSAILRRCPDLESLDLRQ
        T+RGL AIL  CPDLESLDLRQ
Subjt:  TDRGLSAILRRCPDLESLDLRQ

A0A6J1EGI8 F-box protein SKIP19-like isoform X25.3e-1545.08Show/hide
Query:  IESDQNKLRRLRIAVCFEISDEGLTKA----------------------------------LKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGL
        I    N+LR LR+  C  ISDEGL KA                                  LKLN++F++   +  D+ ALA+AE MP L HLQIFGN L
Subjt:  IESDQNKLRRLRIAVCFEISDEGLTKA----------------------------------LKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGL

Query:  TDRGLSAILRRCPDLESLDLRQ
        T+RGL AIL  CPDLESLDLRQ
Subjt:  TDRGLSAILRRCPDLESLDLRQ

SwissProt top hitse value%identityAlignment
Q9M0U6 Putative F-box/LRR-repeat protein 221.7e-1060.32Show/hide
Query:  KALKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGLTDRGLSAILRRCPDLESLDLRQ
        K LKL   FW   L  SD +ALA+A+TMP L HLQ+  NGLT+ GL+AIL  CP LE LDLRQ
Subjt:  KALKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGLTDRGLSAILRRCPDLESLDLRQ

Q9M0U8 Putative F-box/LRR-repeat protein 211.9e-0963.04Show/hide
Query:  DREALAMAETMPKLHHLQIFGNGLTDRGLSAILRRCPDLESLDLRQ
        D +ALA+AE+MPKLHHLQ+  N LT+ GL+AIL  CP LE LD+R+
Subjt:  DREALAMAETMPKLHHLQIFGNGLTDRGLSAILRRCPDLESLDLRQ

Q9M0U9 F-box protein SKIP199.0e-1260.32Show/hide
Query:  KALKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGLTDRGLSAILRRCPDLESLDLRQ
        K LKLNK   K     +D +ALA+AETMPKL HLQ+ GNGL+D GL+AIL  C +LE LDLR+
Subjt:  KALKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGLTDRGLSAILRRCPDLESLDLRQ

Q9S9V8 Putative F-box/LRR-repeat protein 91.4e-0952.38Show/hide
Query:  KALKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGLTDRGLSAILRRCPDLESLDLRQ
        + LKLN     G +   D+ ALA+AETMP L HLQ+F NGL++ GL+AIL  CP L++L L Q
Subjt:  KALKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGLTDRGLSAILRRCPDLESLDLRQ

Q9S9V9 Putative F-box/LRR-repeat protein 232.6e-1137.3Show/hide
Query:  IESDQNKLRRLRIAVCFEISDEGLTKA----------------------------------LKLNKRFWKGQLMVS----DREALAMAETMPKLHHLQIF
        I    + L+ L +  CF I+DEG+ KA                                  LKLN+     ++M S    D  A A+AE+MP+L HLQ+ 
Subjt:  IESDQNKLRRLRIAVCFEISDEGLTKA----------------------------------LKLNKRFWKGQLMVS----DREALAMAETMPKLHHLQIF

Query:  GNGLTDRGLSAILRRCPDLESLDLRQ
        GNGLT++GL+AIL  CP LE LDLRQ
Subjt:  GNGLTDRGLSAILRRCPDLESLDLRQ

Arabidopsis top hitse value%identityAlignment
AT4G05460.1 RNI-like superfamily protein6.4e-1360.32Show/hide
Query:  KALKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGLTDRGLSAILRRCPDLESLDLRQ
        K LKLNK   K     +D +ALA+AETMPKL HLQ+ GNGL+D GL+AIL  C +LE LDLR+
Subjt:  KALKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGLTDRGLSAILRRCPDLESLDLRQ

AT4G05490.1 RNI-like superfamily protein1.2e-1160.32Show/hide
Query:  KALKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGLTDRGLSAILRRCPDLESLDLRQ
        K LKL   FW   L  SD +ALA+A+TMP L HLQ+  NGLT+ GL+AIL  CP LE LDLRQ
Subjt:  KALKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGLTDRGLSAILRRCPDLESLDLRQ

AT4G05497.1 RNI-like superfamily protein1.0e-1052.38Show/hide
Query:  KALKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGLTDRGLSAILRRCPDLESLDLRQ
        + LKLN     G +   D+ ALA+AETMP L HLQ+F NGL++ GL+AIL  CP L++L L Q
Subjt:  KALKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGLTDRGLSAILRRCPDLESLDLRQ

AT5G52480.1 RNI-like superfamily protein2.1e-1155.56Show/hide
Query:  KALKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGLTDRGLSAILRRCPDLESLDLRQ
        K L LN+ F+       D +A+A+AE+MPKL HLQ+ GN LT  GL+AIL  CP LE LDLRQ
Subjt:  KALKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGLTDRGLSAILRRCPDLESLDLRQ

AT5G52480.2 RNI-like superfamily protein2.1e-1155.56Show/hide
Query:  KALKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGLTDRGLSAILRRCPDLESLDLRQ
        K L LN+ F+       D +A+A+AE+MPKL HLQ+ GN LT  GL+AIL  CP LE LDLRQ
Subjt:  KALKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGLTDRGLSAILRRCPDLESLDLRQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGTGGTCTCCCTGGCGAATCAAGCAGTGGTGGTTTTGTTCGCTAAATGTCCAAGGAAGGGCAATCAAATCATGCATCGAAAGTGATCAAAACAAACTTAGAAGACT
CCGGATTGCAGTTTGCTTTGAGATCTCAGATGAGGGATTGACTAAAGCACTCAAACTAAACAAACGATTTTGGAAAGGACAGCTAATGGTAAGTGATCGTGAGGCCCTTG
CTATGGCTGAAACTATGCCTAAATTACATCACCTTCAGATATTTGGCAATGGCCTTACTGACAGGGGCTTGAGCGCCATTCTTCGTCGCTGTCCTGATTTAGAATCTCTC
GACTTACGCCAACTTCGAGGGACAGTTGAGACAGAGATGTGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGTGGTCTCCCTGGCGAATCAAGCAGTGGTGGTTTTGTTCGCTAAATGTCCAAGGAAGGGCAATCAAATCATGCATCGAAAGTGATCAAAACAAACTTAGAAGACT
CCGGATTGCAGTTTGCTTTGAGATCTCAGATGAGGGATTGACTAAAGCACTCAAACTAAACAAACGATTTTGGAAAGGACAGCTAATGGTAAGTGATCGTGAGGCCCTTG
CTATGGCTGAAACTATGCCTAAATTACATCACCTTCAGATATTTGGCAATGGCCTTACTGACAGGGGCTTGAGCGCCATTCTTCGTCGCTGTCCTGATTTAGAATCTCTC
GACTTACGCCAACTTCGAGGGACAGTTGAGACAGAGATGTGCTGA
Protein sequenceShow/hide protein sequence
MRWSPWRIKQWWFCSLNVQGRAIKSCIESDQNKLRRLRIAVCFEISDEGLTKALKLNKRFWKGQLMVSDREALAMAETMPKLHHLQIFGNGLTDRGLSAILRRCPDLESL
DLRQLRGTVETEMC