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Lag0014071 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0014071
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDNA-damage-repair/toleration protein DRT111, chloroplastic
Genome locationchr1:55031985..55032769
RNA-Seq ExpressionLag0014071
SyntenyLag0014071
Gene Ontology termsGO:0043484 - regulation of RNA splicing (biological process)
GO:0045292 - mRNA cis splicing, via spliceosome (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR003954 - RNA recognition motif domain, eukaryote
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily
IPR040052 - Splicing factor 45


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052494.1 DNA-damage-repair/toleration protein DRT111 [Cucumis melo var. makuwa]1.3e-48100Show/hide
Query:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
        VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
Subjt:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT

XP_004134609.1 DNA-damage-repair/toleration protein DRT111, chloroplastic [Cucumis sativus]1.3e-48100Show/hide
Query:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
        VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
Subjt:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT

XP_008439555.1 PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic [Cucumis melo]1.3e-48100Show/hide
Query:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
        VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
Subjt:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT

XP_022146691.1 DNA-damage-repair/toleration protein DRT111, chloroplastic [Momordica charantia]1.3e-48100Show/hide
Query:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
        VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
Subjt:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT

XP_038882071.1 DNA-damage-repair/toleration protein DRT111, chloroplastic [Benincasa hispida]3.0e-4898.98Show/hide
Query:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
        VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDE+RFSKNELAPMPGEVPGFT
Subjt:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT

TrEMBL top hitse value%identityAlignment
A0A0A0KP45 Uncharacterized protein6.5e-49100Show/hide
Query:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
        VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
Subjt:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT

A0A1S3AYL8 DNA-damage-repair/toleration protein DRT111, chloroplastic6.5e-49100Show/hide
Query:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
        VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
Subjt:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT

A0A5A7UAU7 DNA-damage-repair/toleration protein DRT1116.5e-49100Show/hide
Query:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
        VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
Subjt:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT

A0A6J1D044 DNA-damage-repair/toleration protein DRT111, chloroplastic6.5e-49100Show/hide
Query:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
        VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
Subjt:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT

A0A6J1KSL4 DNA-damage-repair/toleration protein DRT111, chloroplastic-like1.9e-4898.98Show/hide
Query:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
        VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERF KNELAPMPGEVPGFT
Subjt:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT

SwissProt top hitse value%identityAlignment
P42698 DNA-damage-repair/toleration protein DRT111, chloroplastic1.4e-4587.63Show/hide
Query:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGF
        VGPG+VDDELE+EVG EC KYGTVTRVLIFEITEPNFPV EAVRIFVQF R EETTKALVDLDGRYFGGR VRATFYDEE+FSKNELAP+PGE+PG+
Subjt:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGF

Q2HJG2 Poly(U)-binding-splicing factor PUF602.0e-1542.86Show/hide
Query:  ATCKCLYYEVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITE-PNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELA
        +T   L   V P ++DD+LE EV  EC K+G V RV+I++  +      +  V+IFV+F  + ET KA+ DL+GR+F GR V A  YD+ERF  ++L+
Subjt:  ATCKCLYYEVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITE-PNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELA

Q3UEB3 Poly(U)-binding-splicing factor PUF602.0e-1542.86Show/hide
Query:  ATCKCLYYEVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITE-PNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELA
        +T   L   V P ++DD+LE EV  EC K+G V RV+I++  +      +  V+IFV+F  + ET KA+  L+GR+FGGR V A  YD+ERF  ++L+
Subjt:  ATCKCLYYEVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITE-PNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELA

Q8JZX4 Splicing factor 451.5e-2159.09Show/hide
Query:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELA
        VG GEVD++LE E   EC KYG V + +IFEI  P  P DEAVRIF++FER E   KA+VDL+GRYFGGRVV+A FY+ ++F   +LA
Subjt:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELA

Q96I25 Splicing factor 451.5e-2159.09Show/hide
Query:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELA
        VG GEVD++LE E   EC KYG V + +IFEI  P  P DEAVRIF++FER E   KA+VDL+GRYFGGRVV+A FY+ ++F   +LA
Subjt:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELA

Arabidopsis top hitse value%identityAlignment
AT1G30480.1 D111/G-patch domain-containing protein1.0e-4687.63Show/hide
Query:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGF
        VGPG+VDDELE+EVG EC KYGTVTRVLIFEITEPNFPV EAVRIFVQF R EETTKALVDLDGRYFGGR VRATFYDEE+FSKNELAP+PGE+PG+
Subjt:  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGF

AT2G16940.1 Splicing factor, CC1-like2.8e-0423.08Show/hide
Query:  EVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERF
        + D++++E+V  EC+K+G +  + + +        +    ++++FE ++    A   L GR+F G+++ AT+   E +
Subjt:  EVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERF

AT2G16940.3 Splicing factor, CC1-like2.8e-0423.08Show/hide
Query:  EVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERF
        + D++++E+V  EC+K+G +  + + +        +    ++++FE ++    A   L GR+F G+++ AT+   E +
Subjt:  EVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERF

AT4G36690.1 U2 snRNP auxilliary factor, large subunit, splicing factor2.7e-0729.29Show/hide
Query:  TCKCLYYEVGPGEVDDELE-----EEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE
        T  CL   V   E+ D+ E     E++  E  K+G +T V+I   +    PV    ++F+++  ++ +T+A   ++GR FGG  V A +Y E++F + +
Subjt:  TCKCLYYEVGPGEVDDELE-----EEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE

AT4G36690.4 U2 snRNP auxilliary factor, large subunit, splicing factor2.7e-0729.29Show/hide
Query:  TCKCLYYEVGPGEVDDELE-----EEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE
        T  CL   V   E+ D+ E     E++  E  K+G +T V+I   +    PV    ++F+++  ++ +T+A   ++GR FGG  V A +Y E++F + +
Subjt:  TCKCLYYEVGPGEVDDELE-----EEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTTGCGACCTGTAAGTGCTTGTATTATGAGGTGGGCCCCGGTGAGGTAGATGACGAGCTAGAAGAGGAAGTAGGATCAGAGTGTGCAAAGTATGGAACAGTAAC
ACGGGTTCTGATATTTGAGATCACAGAACCCAATTTTCCAGTGGATGAGGCTGTTCGAATTTTTGTGCAGTTTGAAAGATCAGAAGAAACAACAAAGGCTTTGGTTGATC
TTGATGGTCGGTACTTTGGTGGAAGGGTGGTTCGAGCTACATTTTATGATGAGGAAAGGTTCAGTAAGAATGAATTAGCTCCAATGCCAGGAGAAGTCCCTGGATTTACA
TGA
mRNA sequenceShow/hide mRNA sequence
ATGGAATTTGCGACCTGTAAGTGCTTGTATTATGAGGTGGGCCCCGGTGAGGTAGATGACGAGCTAGAAGAGGAAGTAGGATCAGAGTGTGCAAAGTATGGAACAGTAAC
ACGGGTTCTGATATTTGAGATCACAGAACCCAATTTTCCAGTGGATGAGGCTGTTCGAATTTTTGTGCAGTTTGAAAGATCAGAAGAAACAACAAAGGCTTTGGTTGATC
TTGATGGTCGGTACTTTGGTGGAAGGGTGGTTCGAGCTACATTTTATGATGAGGAAAGGTTCAGTAAGAATGAATTAGCTCCAATGCCAGGAGAAGTCCCTGGATTTACA
TGA
Protein sequenceShow/hide protein sequence
MEFATCKCLYYEVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT